FvH4_2g29821
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003940
Physical Location & Seq
Forward (+)
23057073 .. 23058034
962 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g29821.t1

Sequence Viewer

Length: 609 bp
ATGGAAATATTCTCCAAGTCTTCTCGTGAAGAAGAAGATGAAGAAGCTCTCAAATGGGCTGCTATTGAGAGATTGCCAACTTACTTACGCATAAGGAGAGGTATACTCGCCAACCAAGACCAGGGCATAGCCAGAGAAATTGATGTCAAGGATTTAGGACTACTAGAAAGGAGGAATTTGCTGGAGAGGCTGGTGAAGATTGCAGATGAAGATAATGAGAAGTTCTTGTTCAAGCTCAAGGATCGCATGGATAGAGTTGGACTTGATTTTCCAACAACTGAGGTGCGGTTTGAGCATTTAAGTGTCGAAGCAGAAGCTTATGTAGGAAGTAGGGCATTACCTACAATACTCAACTTCTCCATTAACATCTTAGAGGGGTTCTTGAATTACCTTCATGTTCTTCCGAGTAGAAAGAAACGATTGCCCATCCTCCATGGTGTTAGTGGAATTATCAAGCCAAGAAGAATGACATTGCTTTTAGGCCCTCCAAGCTCTGGAAAGACTACATTCCTTCTGGCTTTGGCTGGAAAACTCGGTAAAGATCTGAAAATTTCGGGGAGAGTTGCTTACAATGGAGAGGGGATGGAAGAGTTTGTACCAGAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

203

Amino Acids

23.02

Weight (kDa)

7.91

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 69 - 119 3.9e-08 ABC-transporter N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 494
AccI GTMKAC 1 cut(s) 103
AciI CCGC 1 cut(s) 286
AclWI GGATC 1 cut(s) 249
AcsI RAATTY 2 cut(s) 175, 549
AfaI GTAC 1 cut(s) 597
AfiI CCNNNNNNNGG 2 cut(s) 121, 494
AgsI TTSAA 2 cut(s) 232, 385
AjnI CCWGG 1 cut(s) 120
AluBI AGCT 4 cut(s) 47, 235, 317, 492
AluI AGCT 4 cut(s) 47, 235, 317, 492
AlwI GGATC 1 cut(s) 249
AoxI GGCC 1 cut(s) 481
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 2 cut(s) 175, 549
AspS9I GGNCC 1 cut(s) 482
AsuHPI GGTGA 1 cut(s) 205
BarI GAAGNNNNNNTAC 1 cut(s) 579
BauI CACGAG 1 cut(s) 24
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 46
BccI CCATC 2 cut(s) 434, 577
BciT130I CCWGG 1 cut(s) 122
BfaI CTAG 1 cut(s) 164
BglII AGATCT 1 cut(s) 541
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 482
BmrFI CCNGG 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 12
BplI GAGNNNNNCTC 2 cut(s) 90, 122
BpmI CTGGAG 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 221
BsaJI CCNNGG 2 cut(s) 121, 433
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 494
Bse3DI GCAATG 1 cut(s) 470
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 2 cut(s) 121, 433
BseGI GGATG 2 cut(s) 426, 588
BseLI CCNNNNNNNGG 2 cut(s) 121, 494
BseMI GCAATG 1 cut(s) 470
BseMII CTCAG 1 cut(s) 270
BseXI GCAGC 1 cut(s) 46
BshFI GGCC 1 cut(s) 483
BslI CCNNNNNNNGG 2 cut(s) 121, 494
BsnI GGCC 1 cut(s) 483
Bsp143I GATC 2 cut(s) 241, 541
Bsp19I CCATGG 1 cut(s) 433
BspACI CCGC 1 cut(s) 286
BspANI GGCC 1 cut(s) 483
BspCNI CTCAG 1 cut(s) 271
BspPI GGATC 1 cut(s) 249
BsrDI GCAATG 1 cut(s) 470
BssECI CCNNGG 2 cut(s) 121, 433
BssMI GATC 2 cut(s) 241, 541
BssNAI GTATAC 1 cut(s) 104
BssSI CACGAG 1 cut(s) 24
BssT1I CCWWGG 1 cut(s) 433
Bst1107I GTATAC 1 cut(s) 104
Bst2BI CACGAG 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 122
Bst6I CTCTTC 1 cut(s) 582
BstDEI CTNAG 2 cut(s) 279, 370
BstDSI CCRYGG 1 cut(s) 433
BstF5I GGATG 2 cut(s) 426, 588
BstKTI GATC 2 cut(s) 244, 544
BstMBI GATC 2 cut(s) 241, 541
BstMWI GCNNNNNNNGC 3 cut(s) 187, 292, 489
BstNI CCWGG 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 46
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 541
BstYI RGATCY 1 cut(s) 541
BstZ17I GTATAC 1 cut(s) 104
BsuRI GGCC 1 cut(s) 483
BtgI CCRYGG 1 cut(s) 433
BtsCI GGATG 2 cut(s) 426, 588
Cfr13I GGNCC 1 cut(s) 482
Csp6I GTAC 1 cut(s) 596
CviAII CATG 3 cut(s) 247, 395, 434
CviQI GTAC 1 cut(s) 596
DdeI CTNAG 2 cut(s) 279, 370
DpnI GATC 2 cut(s) 243, 543
DpnII GATC 2 cut(s) 241, 541
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
Eco130I CCWWGG 1 cut(s) 433
EcoO109I RGGNCCY 1 cut(s) 482
EcoRII CCWGG 1 cut(s) 120
EcoT14I CCWWGG 1 cut(s) 433
ErhI CCWWGG 1 cut(s) 433
FaeI CATG 3 cut(s) 250, 398, 437
FaiI YATR 7 cut(s) 92, 104, 128, 248, 321, 396, 435
FatI CATG 3 cut(s) 246, 394, 433
FblI GTMKAC 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 2 cut(s) 413, 595
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 1 cut(s) 164
GluI GCNGC 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 1 cut(s) 483
Hin1II CATG 3 cut(s) 250, 398, 437
HindIII AAGCTT 1 cut(s) 315
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 2 cut(s) 405, 546
Hpy188III TCNNGA 3 cut(s) 26, 382, 495
Hpy8I GTNNAC 1 cut(s) 104
HpyAV CCTTC 2 cut(s) 401, 521
HpyCH4V TGCA 1 cut(s) 203
HpyF10VI GCNNNNNNNGC 3 cut(s) 187, 292, 489
HpyF3I CTNAG 2 cut(s) 279, 370
Hsp92II CATG 3 cut(s) 250, 398, 437
Kzo9I GATC 2 cut(s) 241, 541
LpnPI CCDG 8 cut(s) 107, 134, 145, 167, 176, 480, 500, 510
Lsp1109I GCAGC 1 cut(s) 46
MaeI CTAG 1 cut(s) 164
MalI GATC 2 cut(s) 243, 543
MboI GATC 2 cut(s) 241, 541
MflI RGATCY 1 cut(s) 541
MluCI AATT 5 cut(s) 138, 175, 385, 447, 549
MmeI TCCRAC 2 cut(s) 238, 296
MnlI CCTC 8 cut(s) 92, 165, 180, 274, 367, 440, 495, 571
MseI TTAA 2 cut(s) 299, 363
MslI CAYNNNNRTG 1 cut(s) 300
MspR9I CCNGG 1 cut(s) 122
MvaI CCWGG 1 cut(s) 122
MwoI GCNNNNNNNGC 3 cut(s) 187, 292, 489
NcoI CCATGG 1 cut(s) 433
NdeII GATC 2 cut(s) 241, 541
NlaIII CATG 3 cut(s) 250, 398, 437
PflMI CCANNNNNTGG 1 cut(s) 494
PkrI GCNGC 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
PspPI GGNCC 1 cut(s) 482
PsuI RGATCY 1 cut(s) 541
RsaI GTAC 1 cut(s) 597
RsaNI GTAC 1 cut(s) 596
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 2 cut(s) 299, 363
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 2 cut(s) 241, 541
Sau96I GGNCC 1 cut(s) 482
ScrFI CCNGG 1 cut(s) 122
SetI ASST 8 cut(s) 49, 103, 237, 285, 319, 343, 393, 494
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 5 cut(s) 138, 175, 385, 447, 549
SsiI CCGC 1 cut(s) 286
SspI AATATT 1 cut(s) 9
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 120
StyI CCWWGG 1 cut(s) 433
TaqI TCGA 1 cut(s) 306
TasI AATT 5 cut(s) 138, 175, 385, 447, 549
Tru1I TTAA 2 cut(s) 299, 363
Tru9I TTAA 2 cut(s) 299, 363
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 3 cut(s) 54, 222, 383
Van91I CCANNNNNTGG 1 cut(s) 494
XapI RAATTY 2 cut(s) 175, 549
XcmI CCANNNNNNNNNTGG 1 cut(s) 440
XmiI GTMKAC 1 cut(s) 103
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.