Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003940

Physical Location & Seq

Genomic Coordinates Forward (+)

61078425 .. 61079845

Gene Structure 1421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00042760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGATCGATCGGCGAGCTTGTTCCGAGTTCAACCAAAGAAACCCGAAGCCTTGCCGACGTCGGAGCTGCATTTTCCGGCCGGTCGAGCTTCATCCAACTGCGCAGCCTTGCAGCGCCGCCGTGGGCACGAATCGTCGACGGCGACCACCACAGAGACGACCGGAGCAAGGAGACGACCCATTCTCGGAAAGTTTCGTCGCCGGAGGTGGCCGGAGCCGAGAGTTCCGACCGGGTCGGATCGCCGGGTTCGGAACAAGGTTGGTATTGATATTCCTAAAGTTGAGGTTAGATTCCAAAATTTATCAATTGAGGAAGATGAGTTTGTAGGCACCGGAGCACTTCCGACTCGTGGAATTCCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

121

Amino Acids

13.59

Weight (kDa)

11.45

Isoelectric Point (pI)

80.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003940)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29821 FvH4_c11g00010
malus_domestica	MD02G1041000.v1.1 MD08G1141000.v1.1
pyrus_communis	pycom05g17200 pycom14g01660
rosa_chinensis	RchiOBHm_Chr6g0286311
rosa_laevigata	RLG00000012581 RLG00000034948 RLG00000034949
rosa_multiflora	Rmu_co8063796.1_g000001 Rmu_co8130532.1_g000001 Rmu_co8356055.1_g000001 Rmu_co8362065.1_g000001 Rmu_co8518233.1_g000001 Rmu_sc0010154.1_g000003 Rmu_sc0024937.1_g000002 Rmu_sc0041504.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042760 Rroxscaffold_7G00169260 Rroxscaffold_7G00182440
rosa_samantha	Rh2CG374800 Rh5BG371500 Rh5BG371800 Rh5BG372200 Rh5BG372300 Rh5BG372500 Rh5CG394100 Rh5CG394300 Rh6CG295300 Rh6CG408800 Rh6DG395700 Rh6DG396100 Rh7DG199400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	62
Acc16I	TGCGCA	1 cut(s)	103
AccB1I	GGYRCC	1 cut(s)	329
AccI	GTMKAC	1 cut(s)	137
AciI	CCGC	1 cut(s)	118
AclWI	GGATC	2 cut(s)	12, 246
AcoI	YGGCCR	2 cut(s)	78, 209
AcsI	RAATTY	2 cut(s)	298, 354
AcyI	GRCGYC	1 cut(s)	59
AfiI	CCNNNNNNNGG	3 cut(s)	168, 185, 350
AgsI	TTSAA	1 cut(s)	32
AluBI	AGCT	3 cut(s)	18, 67, 89
AluI	AGCT	3 cut(s)	18, 67, 89
Alw21I	GWGCWC	1 cut(s)	340
Alw26I	GTCTC	2 cut(s)	149, 166
AlwI	GGATC	2 cut(s)	12, 246
AoxI	GGCC	2 cut(s)	78, 209
ApeKI	GCWGC	3 cut(s)	67, 104, 112
ApoI	RAATTY	2 cut(s)	298, 354
AspLEI	GCGC	2 cut(s)	104, 117
AsuC2I	CCSGG	2 cut(s)	232, 245
BaeGI	GKGCMC	1 cut(s)	129
BanI	GGYRCC	1 cut(s)	329
BauI	CACGAG	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	340
BbvI	GCAGC	3 cut(s)	54, 116, 124
BceAI	ACGGC	2 cut(s)	105, 156
BcnI	CCSGG	2 cut(s)	232, 245
BcoDI	GTCTC	2 cut(s)	149, 166
BfoI	RGCGCY	1 cut(s)	118
BisI	GCNGC	4 cut(s)	68, 105, 113, 118
BlsI	GCNGC	4 cut(s)	69, 106, 114, 119
Bme1390I	CCNGG	2 cut(s)	232, 245
BmiI	GGNNCC	2 cut(s)	216, 331
BmrFI	CCNGG	2 cut(s)	232, 245
BpuMI	CCSGG	2 cut(s)	232, 245
Bsa29I	ATCGAT	1 cut(s)	7
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	121
BsaWI	WCCGGW	2 cut(s)	161, 332
Bsc4I	CCNNNNNNNGG	3 cut(s)	168, 185, 350
Bse118I	RCCGGY	1 cut(s)	80
BseCI	ATCGAT	1 cut(s)	7
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	1 cut(s)	92
BseLI	CCNNNNNNNGG	3 cut(s)	168, 185, 350
BseSI	GKGCMC	1 cut(s)	129
BseX3I	CGGCCG	1 cut(s)	78
BseXI	GCAGC	3 cut(s)	54, 116, 124
Bsh1285I	CGRYCG	5 cut(s)	11, 81, 85, 162, 231
BshFI	GGCC	2 cut(s)	80, 211
BshNI	GGYRCC	1 cut(s)	329
BshVI	ATCGAT	1 cut(s)	7
BsiEI	CGRYCG	5 cut(s)	11, 81, 85, 162, 231
BsiHKAI	GWGCWC	1 cut(s)	340
BsiSI	CCGG	8 cut(s)	77, 81, 162, 202, 212, 231, 244, 333
BslI	CCNNNNNNNGG	3 cut(s)	168, 185, 350
BsmAI	GTCTC	2 cut(s)	149, 166
BsmBI	CGTCTC	2 cut(s)	149, 166
BsnI	GGCC	2 cut(s)	80, 211
Bsp1286I	GDGCHC	2 cut(s)	129, 340
Bsp143I	GATC	3 cut(s)	4, 8, 238
BspACI	CCGC	1 cut(s)	118
BspANI	GGCC	2 cut(s)	80, 211
BspDI	ATCGAT	1 cut(s)	7
BspLI	GGNNCC	2 cut(s)	216, 331
BspPI	GGATC	2 cut(s)	12, 246
BspT107I	GGYRCC	1 cut(s)	329
BsrFI	RCCGGY	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	3 cut(s)	4, 8, 238
BssNI	GRCGYC	1 cut(s)	59
BssSI	CACGAG	1 cut(s)	348
Bst2BI	CACGAG	1 cut(s)	348
BstACI	GRCGYC	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	16
BstDSI	CCRYGG	1 cut(s)	121
BstF5I	GGATG	1 cut(s)	92
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	2 cut(s)	104, 117
BstKTI	GATC	3 cut(s)	7, 11, 241
BstMAI	GTCTC	2 cut(s)	149, 166
BstMBI	GATC	3 cut(s)	4, 8, 238
BstMCI	CGRYCG	5 cut(s)	11, 81, 85, 162, 231
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstSCI	CCNGG	2 cut(s)	230, 243
BstSLI	GKGCMC	1 cut(s)	129
BstV1I	GCAGC	3 cut(s)	54, 116, 124
BstZI	CGGCCG	1 cut(s)	78
Bsu15I	ATCGAT	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	80, 211
BsuTUI	ATCGAT	1 cut(s)	7
BtgI	CCRYGG	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	16
CfoI	GCGC	2 cut(s)	104, 117
Cfr10I	RCCGGY	1 cut(s)	80
ClaI	ATCGAT	1 cut(s)	7
CviJI	RGCY	8 cut(s)	18, 50, 67, 80, 89, 107, 211, 217
CviKI_1	RGCY	8 cut(s)	18, 50, 67, 80, 89, 107, 211, 217
DpnI	GATC	3 cut(s)	6, 10, 240
DpnII	GATC	3 cut(s)	4, 8, 238
EaeI	YGGCCR	2 cut(s)	78, 209
EagI	CGGCCG	1 cut(s)	78
EclXI	CGGCCG	1 cut(s)	78
Eco52I	CGGCCG	1 cut(s)	78
EcoRI	GAATTC	1 cut(s)	354
Esp3I	CGTCTC	2 cut(s)	149, 166
FblI	GTMKAC	1 cut(s)	137
Fnu4HI	GCNGC	4 cut(s)	68, 105, 113, 118
FokI	GGATG	1 cut(s)	79
Fsp4HI	GCNGC	4 cut(s)	68, 105, 113, 118
FspI	TGCGCA	1 cut(s)	103
GlaI	GCGC	2 cut(s)	103, 116
GluI	GCNGC	4 cut(s)	68, 105, 113, 118
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	2 cut(s)	80, 211
HapII	CCGG	8 cut(s)	77, 81, 162, 202, 212, 231, 244, 333
HhaI	GCGC	2 cut(s)	104, 117
Hin1I	GRCGYC	1 cut(s)	59
Hin6I	GCGC	2 cut(s)	102, 115
HinP1I	GCGC	2 cut(s)	102, 115
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HinfI	GANTC	3 cut(s)	131, 291, 346
HpaII	CCGG	8 cut(s)	77, 81, 162, 202, 212, 231, 244, 333
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	7 cut(s)	26, 64, 188, 228, 238, 252, 345
Hpy8I	GTNNAC	1 cut(s)	138
Hpy99I	CGWCG	5 cut(s)	61, 64, 139, 142, 201
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	2 cut(s)	70, 112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpySE526I	ACGT	1 cut(s)	59
Hsp92I	GRCGYC	1 cut(s)	59
HspAI	GCGC	2 cut(s)	102, 115
Kzo9I	GATC	3 cut(s)	4, 8, 238
LmnI	GCTCC	4 cut(s)	64, 164, 214, 335
LpnPI	CCDG	8 cut(s)	90, 94, 175, 215, 225, 244, 257, 346
Lsp1109I	GCAGC	3 cut(s)	54, 116, 124
MaeII	ACGT	1 cut(s)	59
MalI	GATC	3 cut(s)	6, 10, 240
MboI	GATC	3 cut(s)	4, 8, 238
MboII	GAAGA	1 cut(s)	326
MfeI	CAATTG	1 cut(s)	306
MhlI	GDGCHC	2 cut(s)	129, 340
MluCI	AATT	3 cut(s)	298, 306, 354
MlyI	GAGTC	1 cut(s)	340
MmeI	TCCRAC	4 cut(s)	42, 120, 216, 251
MnlI	CCTC	3 cut(s)	198, 277, 304
MspI	CCGG	8 cut(s)	77, 81, 162, 202, 212, 231, 244, 333
MspR9I	CCNGG	2 cut(s)	232, 245
MunI	CAATTG	1 cut(s)	306
MwoI	GCNNNNNNNGC	1 cut(s)	86
NciI	CCSGG	2 cut(s)	232, 245
NdeII	GATC	3 cut(s)	4, 8, 238
NlaIV	GGNNCC	2 cut(s)	216, 331
NmeAIII	GCCGAG	1 cut(s)	243
NsbI	TGCGCA	1 cut(s)	103
PcsI	WCGNNNNNNNCGW	1 cut(s)	140
PfeI	GAWTC	2 cut(s)	131, 291
PflFI	GACNNNGTC	1 cut(s)	232
PkrI	GCNGC	4 cut(s)	69, 106, 114, 119
Ple19I	CGATCG	1 cut(s)	11
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
PspN4I	GGNNCC	2 cut(s)	216, 331
PsyI	GACNNNGTC	1 cut(s)	232
PvuI	CGATCG	1 cut(s)	11
SalI	GTCGAC	1 cut(s)	136
SatI	GCNGC	4 cut(s)	68, 105, 113, 118
Sau3AI	GATC	3 cut(s)	4, 8, 238
SchI	GAGTC	1 cut(s)	340
ScrFI	CCNGG	2 cut(s)	232, 245
SduI	GDGCHC	2 cut(s)	129, 340
SetI	ASST	7 cut(s)	20, 62, 69, 91, 209, 261, 288
SgrDI	CGTCGACG	1 cut(s)	136
Sse9I	AATT	3 cut(s)	298, 306, 354
SsiI	CCGC	1 cut(s)	118
StyD4I	CCNGG	2 cut(s)	230, 243
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	3 cut(s)	7, 85, 137
TasI	AATT	3 cut(s)	298, 306, 354
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	2 cut(s)	131, 291
TseI	GCWGC	3 cut(s)	67, 104, 112
TspDTI	ATGAA	1 cut(s)	81
Tth111I	GACNNNGTC	1 cut(s)	232
XapI	RAATTY	2 cut(s)	298, 354
XmiI	GTMKAC	1 cut(s)	137
ZraI	GACGTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.