Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

contig_11

Orthogroup ID

OG0003940

Physical Location & Seq

Genomic Coordinates Reverse (-)

31 .. 1321

Gene Structure 1291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_c11g00010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGAGAAGTTCTGAAGAAGCTCAGAGCAGAAATGACAGGGTCGGTATCGATATTCCTAAAGTTGAGGTTAGATTCCAGAATCTAGCAATAGAGGGAGATGCGTTTGTAGGCACCAGAGCACTTCCGACTCTTTGGAATTCCACCTTGAACGCAATAGAGGGAATACTGGGACTTGTTGGACTTTCACCATCGAAGAAAAGAATTGTTAAGATTCTACAAAATGTTAGTGGTATCGTCAAACCAGCAAGGATGACACTTCTTCTTGGACCTCCGGGGTCAGGAAAGACAACATTGCTAAAAGCACTATCTGGCAAACTAGATAGGATCTTAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

112

Amino Acids

11.87

Weight (kDa)

10.42

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	72 - 107	4.4e-07	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003940)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29821 FvH4_c11g00010
malus_domestica	MD02G1041000.v1.1 MD08G1141000.v1.1
pyrus_communis	pycom05g17200 pycom14g01660
rosa_chinensis	RchiOBHm_Chr6g0286311
rosa_laevigata	RLG00000012581 RLG00000034948 RLG00000034949
rosa_multiflora	Rmu_co8063796.1_g000001 Rmu_co8130532.1_g000001 Rmu_co8356055.1_g000001 Rmu_co8362065.1_g000001 Rmu_co8518233.1_g000001 Rmu_sc0010154.1_g000003 Rmu_sc0024937.1_g000002 Rmu_sc0041504.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042760 Rroxscaffold_7G00169260 Rroxscaffold_7G00182440
rosa_samantha	Rh2CG374800 Rh5BG371500 Rh5BG371800 Rh5BG372200 Rh5BG372300 Rh5BG372500 Rh5CG394100 Rh5CG394300 Rh6CG295300 Rh6CG408800 Rh6DG395700 Rh6DG396100 Rh7DG199400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	110
AclWI	GGATC	1 cut(s)	332
AcsI	RAATTY	1 cut(s)	136
AcuI	CTGAAG	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	1 cut(s)	148
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw21I	GWGCWC	1 cut(s)	121
AlwI	GGATC	1 cut(s)	332
ApoI	RAATTY	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	266
AsuC2I	CCSGG	1 cut(s)	273
AsuHPI	GGTGA	1 cut(s)	177
AvaII	GGWCC	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	121
BccI	CCATC	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	273
BfaI	CTAG	2 cut(s)	83, 317
Bme1390I	CCNGG	1 cut(s)	273
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	273
BmrI	ACTGGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	176
BpuMI	CCSGG	1 cut(s)	273
Bsa29I	ATCGAT	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	290
BseCI	ATCGAT	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	272
BseGI	GGATG	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMI	GCAATG	1 cut(s)	290
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	1 cut(s)	171
BshNI	GGYRCC	1 cut(s)	110
BshVI	ATCGAT	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmFI	GGGAC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	1 cut(s)	324
BspCNI	CTCAG	1 cut(s)	34
BspDI	ATCGAT	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	112
BspPI	GGATC	1 cut(s)	332
BspT107I	GGYRCC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	272
BssMI	GATC	1 cut(s)	324
BstDEI	CTNAG	2 cut(s)	21, 328
BstF5I	GGATG	1 cut(s)	255
BstKTI	GATC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	324
BstSCI	CCNGG	1 cut(s)	271
BstX2I	RGATCY	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	324
Bsu15I	ATCGAT	1 cut(s)	48
BsuTUI	ATCGAT	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	266
ClaI	ATCGAT	1 cut(s)	48
CviJI	RGCY	1 cut(s)	20
CviKI_1	RGCY	1 cut(s)	20
DdeI	CTNAG	2 cut(s)	21, 328
DpnI	GATC	1 cut(s)	326
DpnII	GATC	1 cut(s)	324
Eco47I	GGWCC	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	136
FaqI	GGGAC	1 cut(s)	183
FokI	GGATG	1 cut(s)	262
FspBI	CTAG	2 cut(s)	83, 317
HapII	CCGG	1 cut(s)	272
HinfI	GANTC	4 cut(s)	72, 79, 127, 211
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	1 cut(s)	177
Hpy188I	TCNGA	3 cut(s)	13, 24, 126
Hpy188III	TCNNGA	2 cut(s)	76, 279
HpyF3I	CTNAG	2 cut(s)	21, 328
Kzo9I	GATC	1 cut(s)	324
LpnPI	CCDG	8 cut(s)	22, 89, 127, 152, 255, 264, 285, 294
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	2 cut(s)	83, 317
MalI	GATC	1 cut(s)	326
MboI	GATC	1 cut(s)	324
MboII	GAAGA	3 cut(s)	26, 205, 251
MflI	RGATCY	1 cut(s)	324
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	2 cut(s)	136, 201
MlyI	GAGTC	1 cut(s)	121
MmeI	TCCRAC	2 cut(s)	149, 157
MnlI	CCTC	4 cut(s)	58, 85, 151, 279
MseI	TTAA	1 cut(s)	207
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	273
NciI	CCSGG	1 cut(s)	273
NdeII	GATC	1 cut(s)	324
NlaIV	GGNNCC	1 cut(s)	112
PfeI	GAWTC	3 cut(s)	72, 79, 211
PflFI	GACNNNGTC	1 cut(s)	38
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	112
PspPI	GGNCC	1 cut(s)	266
PsuI	RGATCY	1 cut(s)	324
PsyI	GACNNNGTC	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	207
Sau3AI	GATC	1 cut(s)	324
Sau96I	GGNCC	1 cut(s)	266
SchI	GAGTC	1 cut(s)	121
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	1 cut(s)	121
SetI	ASST	4 cut(s)	22, 69, 146, 271
SfaNI	GCATC	1 cut(s)	88
SinI	GGWCC	1 cut(s)	266
Sse9I	AATT	2 cut(s)	136, 201
SspMI	CTAG	2 cut(s)	83, 317
StyD4I	CCNGG	1 cut(s)	271
TaqI	TCGA	2 cut(s)	48, 191
TasI	AATT	2 cut(s)	136, 201
TfiI	GAWTC	3 cut(s)	72, 79, 211
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
Tth111I	GACNNNGTC	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	1 cut(s)	136
XspI	CTAG	2 cut(s)	83, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.