Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010154.1

Orthogroup ID

OG0003940

Physical Location & Seq

Genomic Coordinates Reverse (-)

9699 .. 10164

Gene Structure 466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010154.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgaagtcgtcgagcagccgtaaagaaacttggtgcccaaagcccgatctctctctctgctctctctccctcctctctctcccctccacactaaagaaacttggggtggactcgcgtgtgctccaaataaagtctccggctttccagaagctccgagagaacaaggttggtattgatattcctaaagttgaggttagattccaaaatttaacaattgaggaagatgcgtttgtaggcaccagaacacttccaactctgtggaattccaccttgaacgcaatagaggtattacagcaaagatatttcccagtagtaaagtttacttctttgtctattgtgcctagtgtgaatcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

118

Amino Acids

13.28

Weight (kDa)

9.64

Isoelectric Point (pI)

50.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003940)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29821 FvH4_c11g00010
malus_domestica	MD02G1041000.v1.1 MD08G1141000.v1.1
pyrus_communis	pycom05g17200 pycom14g01660
rosa_chinensis	RchiOBHm_Chr6g0286311
rosa_laevigata	RLG00000012581 RLG00000034948 RLG00000034949
rosa_multiflora	Rmu_co8063796.1_g000001 Rmu_co8130532.1_g000001 Rmu_co8356055.1_g000001 Rmu_co8362065.1_g000001 Rmu_co8518233.1_g000001 Rmu_sc0010154.1_g000003 Rmu_sc0024937.1_g000002 Rmu_sc0041504.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042760 Rroxscaffold_7G00169260 Rroxscaffold_7G00182440
rosa_samantha	Rh2CG374800 Rh5BG371500 Rh5BG371800 Rh5BG372200 Rh5BG372300 Rh5BG372500 Rh5CG394100 Rh5CG394300 Rh6CG295300 Rh6CG408800 Rh6DG395700 Rh6DG396100 Rh7DG199400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	33, 236
AccII	CGCG	1 cut(s)	115
AcsI	RAATTY	2 cut(s)	205, 262
AgsI	TTSAA	1 cut(s)	274
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	15
ApoI	RAATTY	2 cut(s)	205, 262
BaeGI	GKGCMC	1 cut(s)	38
BanI	GGYRCC	2 cut(s)	33, 236
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	27
BceAI	ACGGC	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	1 cut(s)	342
BisI	GCNGC	1 cut(s)	16
BlsI	GCNGC	1 cut(s)	17
BmiI	GGNNCC	2 cut(s)	35, 238
BmrI	ACTGGG	1 cut(s)	302
BmsI	GCATC	1 cut(s)	214
BmuI	ACTGGG	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	308
BseNI	ACTGG	1 cut(s)	308
BseRI	GAGGAG	1 cut(s)	62
BseSI	GKGCMC	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	27
Bsh1236I	CGCG	1 cut(s)	115
BshNI	GGYRCC	2 cut(s)	33, 236
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	138
Bsp1286I	GDGCHC	2 cut(s)	38, 123
Bsp143I	GATC	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	115
BspLI	GGNNCC	2 cut(s)	35, 238
BspT107I	GGYRCC	2 cut(s)	33, 236
BsrI	ACTGG	1 cut(s)	308
BssMI	GATC	1 cut(s)	46
BstFNI	CGCG	1 cut(s)	115
BstKTI	GATC	1 cut(s)	49
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	46
BstSLI	GKGCMC	1 cut(s)	38
BstUI	CGCG	1 cut(s)	115
BstV1I	GCAGC	1 cut(s)	27
BstXI	CCANNNNNNTGG	1 cut(s)	258
CviJI	RGCY	4 cut(s)	18, 43, 140, 151
CviKI_1	RGCY	4 cut(s)	18, 43, 140, 151
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
EcoRI	GAATTC	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	16
Fsp4HI	GCNGC	1 cut(s)	16
FspBI	CTAG	1 cut(s)	342
GluI	GCNGC	1 cut(s)	16
HapII	CCGG	1 cut(s)	137
HinfI	GANTC	3 cut(s)	110, 198, 349
HpaII	CCGG	1 cut(s)	137
Hpy166II	GTNNAC	2 cut(s)	109, 321
Hpy188I	TCNGA	1 cut(s)	155
Hpy188III	TCNNGA	1 cut(s)	145
Hpy8I	GTNNAC	2 cut(s)	109, 321
Hpy99I	CGWCG	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	46
LmnI	GCTCC	2 cut(s)	126, 156
LpnPI	CCDG	4 cut(s)	150, 158, 253, 321
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	342
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	1 cut(s)	233
MfeI	CAATTG	1 cut(s)	213
MhlI	GDGCHC	2 cut(s)	38, 123
MluCI	AATT	3 cut(s)	205, 213, 262
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	275
MnlI	CCTC	6 cut(s)	80, 83, 94, 184, 211, 277
MseI	TTAA	1 cut(s)	209
MspI	CCGG	1 cut(s)	137
MunI	CAATTG	1 cut(s)	213
MvnI	CGCG	1 cut(s)	115
NdeII	GATC	1 cut(s)	46
NlaIV	GGNNCC	2 cut(s)	35, 238
PfeI	GAWTC	2 cut(s)	198, 349
PkrI	GCNGC	1 cut(s)	17
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
PspN4I	GGNNCC	2 cut(s)	35, 238
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	1 cut(s)	16
Sau3AI	GATC	1 cut(s)	46
SchI	GAGTC	1 cut(s)	104
SduI	GDGCHC	2 cut(s)	38, 123
SetI	ASST	5 cut(s)	153, 168, 195, 272, 288
SfaNI	GCATC	1 cut(s)	214
Sse9I	AATT	3 cut(s)	205, 213, 262
SspMI	CTAG	1 cut(s)	342
TaqI	TCGA	1 cut(s)	11
TasI	AATT	3 cut(s)	205, 213, 262
TfiI	GAWTC	2 cut(s)	198, 349
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TseI	GCWGC	1 cut(s)	15
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	2 cut(s)	205, 262
XspI	CTAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.