Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003940

Physical Location & Seq

Genomic Coordinates Forward (+)

50892671 .. 50893795

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG374800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAGAGTGGTAATATCCAATTAGGCAGTTCCTCTATATGGAGGAACCATGGTAGTGTGGACGGTTTTTCGAGTTCTACACGCAGAGAAGACGATGAAGAAGCTCTCAAATGGGCTGCCCTAGAGAAGCTTCCCACTTATAATCGTCTGAGGAAAGGTATACTCACCTCGGCCAGTGGAAAAGCTAATGAAATTGATATACCAAATCTTGGTTTTGAAGAGAAAAAGGACTTGGTTGAGAGGTTGCTTAAAGGCACTGAAGACGGCAACGAAAAGTTTGTATTGAAGCTCAAGAATCGTATTGATAGAGTTGGAATTGATCTTCCCACAATTGAAGTTCGATTTGAGCATCTAAATATAGAAGCAGAAGCTTATGTAGGAAGCCGAGCTTTGCCTACTCTCGTAAACTGGACTGCTAACATAATCCAGAATGACATTACTATTGGGTCCTCCAAGTTCCGGCAAGACCACACTGTTATTGGCTTTGGCTGGAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0002229 GO:0002239 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006855 GO:0006869 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0010033 GO:0010035 GO:0010193 GO:0010876 GO:0014070 GO:0015399 GO:0015405 GO:0015692 GO:0015711 GO:0015718 GO:0015849 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030001 GO:0031224 GO:0033036 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043207 GO:0043492 GO:0044425 GO:0044464 GO:0046677 GO:0046864 GO:0046865 GO:0046942 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071944 GO:0080168 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

166

Amino Acids

18.63

Weight (kDa)

5.97

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_trans_N	PF14510	90 - 136	1.2e-07	ABC-transporter N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003940)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29821 FvH4_c11g00010
malus_domestica	MD02G1041000.v1.1 MD08G1141000.v1.1
pyrus_communis	pycom05g17200 pycom14g01660
rosa_chinensis	RchiOBHm_Chr6g0286311
rosa_laevigata	RLG00000012581 RLG00000034948 RLG00000034949
rosa_multiflora	Rmu_co8063796.1_g000001 Rmu_co8130532.1_g000001 Rmu_co8356055.1_g000001 Rmu_co8362065.1_g000001 Rmu_co8518233.1_g000001 Rmu_sc0010154.1_g000003 Rmu_sc0024937.1_g000002 Rmu_sc0041504.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042760 Rroxscaffold_7G00169260 Rroxscaffold_7G00182440
rosa_samantha	Rh2CG374800 Rh5BG371500 Rh5BG371800 Rh5BG372200 Rh5BG372300 Rh5BG372500 Rh5CG394100 Rh5CG394300 Rh6CG295300 Rh6CG408800 Rh6DG395700 Rh6DG396100 Rh7DG199400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	141
AccB7I	CCANNNNNTGG	1 cut(s)	209
AccI	GTMKAC	1 cut(s)	160
AcoI	YGGCCR	1 cut(s)	171
AcuI	CTGAAG	1 cut(s)	279
AfiI	CCNNNNNNNGG	3 cut(s)	39, 209, 459
AgsI	TTSAA	3 cut(s)	218, 286, 335
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AluBI	AGCT	7 cut(s)	104, 130, 185, 289, 371, 389, 497
AluI	AGCT	7 cut(s)	104, 130, 185, 289, 371, 389, 497
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	447
AsuHPI	GGTGA	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	447
BbsI	GAAGAC	2 cut(s)	96, 267
BbvI	GCAGC	1 cut(s)	103
BceAI	ACGGC	1 cut(s)	280
BfaI	CTAG	1 cut(s)	122
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme18I	GGWCC	1 cut(s)	447
BmgT120I	GGNCC	1 cut(s)	447
BmiI	GGNNCC	2 cut(s)	47, 448
BmsI	GCATC	1 cut(s)	358
BpiI	GAAGAC	2 cut(s)	96, 267
BpuEI	CTTGAG	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	49, 168
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 209, 459
Bse1I	ACTGG	2 cut(s)	174, 413
BseDI	CCNNGG	2 cut(s)	49, 168
BseLI	CCNNNNNNNGG	3 cut(s)	39, 209, 459
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	2 cut(s)	174, 413
BseXI	GCAGC	1 cut(s)	103
BshFI	GGCC	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	460
BslI	CCNNNNNNNGG	3 cut(s)	39, 209, 459
BsnI	GGCC	1 cut(s)	173
Bsp143I	GATC	1 cut(s)	319
Bsp19I	CCATGG	1 cut(s)	49
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	1 cut(s)	141
BspLI	GGNNCC	2 cut(s)	47, 448
BsrI	ACTGG	2 cut(s)	174, 413
BssECI	CCNNGG	2 cut(s)	49, 168
BssMI	GATC	1 cut(s)	319
BssNAI	GTATAC	1 cut(s)	161
BssT1I	CCWWGG	1 cut(s)	49
Bst1107I	GTATAC	1 cut(s)	161
Bst4CI	ACNGT	2 cut(s)	65, 475
Bst6I	CTCTTC	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	149
BstDSI	CCRYGG	1 cut(s)	49
BstKTI	GATC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	319
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	2 cut(s)	96, 267
BstZ17I	GTATAC	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	173
BtgI	CCRYGG	1 cut(s)	49
BtsIMutI	CAGTG	3 cut(s)	181, 255, 471
Cfr13I	GGNCC	1 cut(s)	447
CviAII	CATG	1 cut(s)	50
DdeI	CTNAG	1 cut(s)	149
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco130I	CCWWGG	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	447
Eco57I	CTGAAG	1 cut(s)	279
EcoO109I	RGGNCCY	1 cut(s)	447
EcoT14I	CCWWGG	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	49
FaeI	CATG	1 cut(s)	53
FaiI	YATR	9 cut(s)	38, 40, 51, 141, 161, 200, 359, 375, 422
FalI	AAGNNNNNCTT	2 cut(s)	373, 405
FatI	CATG	1 cut(s)	49
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	173
HapII	CCGG	1 cut(s)	460
Hin1II	CATG	1 cut(s)	53
HindIII	AAGCTT	3 cut(s)	128, 369, 495
HinfI	GANTC	1 cut(s)	295
HpaII	CCGG	1 cut(s)	460
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	3 cut(s)	61, 161, 406
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	2 cut(s)	292, 427
Hpy8I	GTNNAC	3 cut(s)	61, 161, 406
HpyCH4III	ACNGT	2 cut(s)	65, 475
HpyF3I	CTNAG	1 cut(s)	149
Hsp92II	CATG	1 cut(s)	53
Kzo9I	GATC	1 cut(s)	319
LpnPI	CCDG	5 cut(s)	187, 394, 440, 473, 475
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	1 cut(s)	122
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	5 cut(s)	101, 110, 230, 272, 314
MfeI	CAATTG	1 cut(s)	330
MluCI	AATT	4 cut(s)	20, 192, 315, 330
MmeI	TCCRAC	1 cut(s)	292
MnlI	CCTC	6 cut(s)	36, 43, 144, 178, 234, 460
MseI	TTAA	1 cut(s)	249
MslI	CAYNNNNRTG	1 cut(s)	54
MspI	CCGG	1 cut(s)	460
MunI	CAATTG	1 cut(s)	330
NcoI	CCATGG	1 cut(s)	49
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	1 cut(s)	53
NlaIV	GGNNCC	2 cut(s)	47, 448
NmeAIII	GCCGAG	2 cut(s)	149, 410
PfeI	GAWTC	1 cut(s)	295
PflMI	CCANNNNNTGG	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	118
PpuMI	RGGWCCY	1 cut(s)	447
PsiI	TTATAA	1 cut(s)	141
Psp5II	RGGWCCY	1 cut(s)	447
PspN4I	GGNNCC	2 cut(s)	47, 448
PspPI	GGNCC	1 cut(s)	447
PspPPI	RGGWCCY	1 cut(s)	447
RseI	CAYNNNNRTG	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	319
Sau96I	GGNCC	1 cut(s)	447
SfaNI	GCATC	1 cut(s)	358
SinI	GGWCC	1 cut(s)	447
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	4 cut(s)	20, 192, 315, 330
SspMI	CTAG	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	49
TaaI	ACNGT	2 cut(s)	65, 475
TaqI	TCGA	2 cut(s)	71, 340
TasI	AATT	4 cut(s)	20, 192, 315, 330
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	3 cut(s)	181, 262, 478
TseI	GCWGC	1 cut(s)	116
TspDTI	ATGAA	2 cut(s)	111, 204
TspRI	CASTG	3 cut(s)	181, 262, 478
Van91I	CCANNNNNTGG	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	447
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.