Rroxscaffold_7G00182440
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003940
Physical Location & Seq
Reverse (-)
21471818 .. 21472791
974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00182440.1

Sequence Viewer

Length: 471 bp
ATGGAGATCATCATCTGTGACCTTGAAAAAGCCGGTCACAGTTTCAACAGAAGGGGTTCGTTTTGGACTGACGATGGCAGGGCGCGCGCGGTTTTCTCAGCATCTTCCGTTGGAGAGGACGATGAGGAAGCTCTCAAATGGGCAGCTCTGCAGAGACTTCCTACCTTCACTCGTTTGAAAAAAGGGTTGCTCACTACTCCAAAAGGCCATGCCAGCGAAGTCGATGTGCAGCACCTTGAGCTGCAAGAAAAGAAAGACTTGATCGAGAGGCTAGTGGGAGTGGCTGAGGAGGATCATGAGAAATTTTTGTTGAGGCTCAAGAGCCGAATCGATAGAGTTGGAATTAGTCTTCCTACGATTGAAGTTAGGTTCGAGCATTTGAAAATTGCAGCTGAAACTCATGTTGGAGGCCGGCCTCTGCCTTCTGTCTTCAATTATTGTGTTAATGTACTGCAGTACTGGAGGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

156

Amino Acids

17.86

Weight (kDa)

6.6

Isoelectric Point (pI)

35.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 96 - 145 2.7e-06 ABC-transporter N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 85, 87, 89
AciI CCGC 1 cut(s) 89
AclWI GGATC 1 cut(s) 300
AcsI RAATTY 1 cut(s) 302
AfaI GTAC 3 cut(s) 450, 458, 467
AgsI TTSAA 6 cut(s) 26, 46, 178, 362, 382, 433
AjuI GAANNNNNNNTTGG 2 cut(s) 387, 419
AluBI AGCT 4 cut(s) 131, 146, 241, 392
AluI AGCT 4 cut(s) 131, 146, 241, 392
Alw26I GTCTC 1 cut(s) 148
AlwI GGATC 1 cut(s) 300
AoxI GGCC 3 cut(s) 205, 409, 413
ApeKI GCWGC 4 cut(s) 143, 229, 241, 389
ApoI RAATTY 1 cut(s) 302
Asp700I GAANNNNTTC 1 cut(s) 55
AspLEI GCGC 3 cut(s) 85, 87, 89
BbsI GAAGAC 2 cut(s) 341, 421
BbvCI CCTCAGC 1 cut(s) 285
BbvI GCAGC 4 cut(s) 155, 228, 241, 401
BccI CCATC 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 148
BfaI CTAG 1 cut(s) 272
BfmI CTRYAG 2 cut(s) 149, 452
BisI GCNGC 4 cut(s) 144, 230, 242, 390
BlsI GCNGC 4 cut(s) 145, 231, 243, 391
BmcAI AGTACT 1 cut(s) 458
BmsI GCATC 1 cut(s) 110
BpiI GAAGAC 2 cut(s) 341, 421
Bpu10I CCTNAGC 1 cut(s) 285
BpuEI CTTGAG 2 cut(s) 257, 302
Bsa29I ATCGAT 1 cut(s) 330
BsaBI GATNNNNATC 1 cut(s) 11
Bse118I RCCGGY 2 cut(s) 32, 411
Bse1I ACTGG 1 cut(s) 464
Bse8I GATNNNNATC 1 cut(s) 11
BseCI ATCGAT 1 cut(s) 330
BseJI GATNNNNATC 1 cut(s) 11
BseMII CTCAG 2 cut(s) 111, 276
BseNI ACTGG 1 cut(s) 464
BsePI GCGCGC 2 cut(s) 83, 85
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 4 cut(s) 155, 228, 241, 401
BsgI GTGCAG 1 cut(s) 248
Bsh1236I CGCG 3 cut(s) 85, 87, 89
BshFI GGCC 3 cut(s) 207, 411, 415
BshVI ATCGAT 1 cut(s) 330
BsiSI CCGG 2 cut(s) 33, 412
BsmAI GTCTC 1 cut(s) 148
BsnI GGCC 3 cut(s) 207, 411, 415
Bsp143I GATC 3 cut(s) 6, 261, 292
BspACI CCGC 1 cut(s) 89
BspANI GGCC 3 cut(s) 207, 411, 415
BspCNI CTCAG 2 cut(s) 110, 277
BspDI ATCGAT 1 cut(s) 330
BspFNI CGCG 3 cut(s) 85, 87, 89
BspHI TCATGA 1 cut(s) 295
BspMAI CTGCAG 2 cut(s) 153, 456
BspPI GGATC 1 cut(s) 300
BsrFI RCCGGY 2 cut(s) 32, 411
BsrI ACTGG 1 cut(s) 464
BssAI RCCGGY 2 cut(s) 32, 411
BssHII GCGCGC 2 cut(s) 83, 85
BssMI GATC 3 cut(s) 6, 261, 292
Bst4CI ACNGT 1 cut(s) 41
BstC8I GCNNGC 4 cut(s) 85, 87, 214, 413
BstDEI CTNAG 2 cut(s) 97, 285
BstFNI CGCG 3 cut(s) 85, 87, 89
BstHHI GCGC 3 cut(s) 85, 87, 89
BstKTI GATC 3 cut(s) 9, 264, 295
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 3 cut(s) 6, 261, 292
BstMWI GCNNNNNNNGC 3 cut(s) 84, 213, 238
BstSFI CTRYAG 2 cut(s) 149, 452
BstUI CGCG 3 cut(s) 85, 87, 89
BstV1I GCAGC 4 cut(s) 155, 228, 241, 401
BstV2I GAAGAC 2 cut(s) 341, 421
Bsu15I ATCGAT 1 cut(s) 330
BsuRI GGCC 3 cut(s) 207, 411, 415
BsuTUI ATCGAT 1 cut(s) 330
Cac8I GCNNGC 4 cut(s) 85, 87, 214, 413
CciI TCATGA 1 cut(s) 295
CfoI GCGC 3 cut(s) 85, 87, 89
Cfr10I RCCGGY 2 cut(s) 32, 411
ClaI ATCGAT 1 cut(s) 330
Csp6I GTAC 3 cut(s) 449, 457, 466
CviAII CATG 3 cut(s) 209, 296, 401
CviQI GTAC 3 cut(s) 449, 457, 466
DdeI CTNAG 2 cut(s) 97, 285
DpnI GATC 3 cut(s) 8, 263, 294
DpnII GATC 3 cut(s) 6, 261, 292
FaeI CATG 3 cut(s) 212, 299, 404
FaiI YATR 3 cut(s) 210, 297, 402
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FatI CATG 3 cut(s) 208, 295, 400
Fnu4HI GCNGC 4 cut(s) 144, 230, 242, 390
FseI GGCCGGCC 1 cut(s) 415
Fsp4HI GCNGC 4 cut(s) 144, 230, 242, 390
FspBI CTAG 1 cut(s) 272
GlaI GCGC 3 cut(s) 84, 86, 88
GluI GCNGC 4 cut(s) 144, 230, 242, 390
HaeIII GGCC 3 cut(s) 207, 411, 415
HapII CCGG 2 cut(s) 33, 412
HhaI GCGC 3 cut(s) 85, 87, 89
Hin1II CATG 3 cut(s) 212, 299, 404
Hin6I GCGC 3 cut(s) 83, 85, 87
HinP1I GCGC 3 cut(s) 83, 85, 87
HinfI GANTC 1 cut(s) 327
HpaII CCGG 2 cut(s) 33, 412
Hpy188III TCNNGA 3 cut(s) 265, 296, 319
HpyAV CCTTC 3 cut(s) 45, 175, 432
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4V TGCA 5 cut(s) 151, 229, 244, 389, 454
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 213, 238
HpyF3I CTNAG 2 cut(s) 97, 285
Hsp92II CATG 3 cut(s) 212, 299, 404
HspAI GCGC 3 cut(s) 83, 85, 87
KroI GCCGGC 1 cut(s) 411
KroNI GCCGGC 1 cut(s) 413
Kzo9I GATC 3 cut(s) 6, 261, 292
LpnPI CCDG 5 cut(s) 46, 64, 226, 425, 445
Lsp1109I GCAGC 4 cut(s) 155, 228, 241, 401
LweI GCATC 1 cut(s) 110
MaeI CTAG 1 cut(s) 272
MaeIII GTNAC 2 cut(s) 17, 35
MalI GATC 3 cut(s) 8, 263, 294
MauBI CGCGCGCG 1 cut(s) 85
MboI GATC 3 cut(s) 6, 261, 292
MboII GAAGA 3 cut(s) 96, 341, 421
MluCI AATT 4 cut(s) 302, 342, 384, 433
MmeI TCCRAC 3 cut(s) 91, 319, 385
MnlI CCTC 9 cut(s) 109, 118, 261, 280, 283, 306, 401, 426, 456
MroNI GCCGGC 1 cut(s) 411
MroXI GAANNNNTTC 1 cut(s) 55
MseI TTAA 1 cut(s) 444
MspA1I CMGCKG 1 cut(s) 392
MspI CCGG 2 cut(s) 33, 412
MvnI CGCG 3 cut(s) 85, 87, 89
MwoI GCNNNNNNNGC 3 cut(s) 84, 213, 238
NaeI GCCGGC 1 cut(s) 413
NdeII GATC 3 cut(s) 6, 261, 292
NgoMIV GCCGGC 1 cut(s) 411
NlaIII CATG 3 cut(s) 212, 299, 404
NmuCI GTSAC 2 cut(s) 17, 35
PagI TCATGA 1 cut(s) 295
PauI GCGCGC 2 cut(s) 83, 85
PdiI GCCGGC 1 cut(s) 413
PdmI GAANNNNTTC 1 cut(s) 55
PfeI GAWTC 1 cut(s) 327
PkrI GCNGC 4 cut(s) 145, 231, 243, 391
PstI CTGCAG 2 cut(s) 153, 456
PteI GCGCGC 2 cut(s) 83, 85
PvuII CAGCTG 1 cut(s) 392
RigI GGCCGGCC 1 cut(s) 415
RsaI GTAC 3 cut(s) 450, 458, 467
RsaNI GTAC 3 cut(s) 449, 457, 466
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 4 cut(s) 144, 230, 242, 390
Sau3AI GATC 3 cut(s) 6, 261, 292
ScaI AGTACT 1 cut(s) 458
SetI ASST 9 cut(s) 24, 133, 148, 167, 237, 243, 371, 394, 467
SfaNI GCATC 1 cut(s) 110
SfcI CTRYAG 2 cut(s) 149, 452
SmlI CTYRAG 2 cut(s) 236, 317
SmoI CTYRAG 2 cut(s) 236, 317
Sse9I AATT 4 cut(s) 302, 342, 384, 433
SsiI CCGC 1 cut(s) 89
SspMI CTAG 1 cut(s) 272
TaaI ACNGT 1 cut(s) 41
TaqI TCGA 4 cut(s) 222, 264, 330, 372
TasI AATT 4 cut(s) 302, 342, 384, 433
TatI WGTACW 2 cut(s) 448, 456
TfiI GAWTC 1 cut(s) 327
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TseFI GTSAC 2 cut(s) 17, 35
TseI GCWGC 4 cut(s) 143, 229, 241, 389
Tsp45I GTSAC 2 cut(s) 17, 35
TspGWI ACGGA 1 cut(s) 97
XapI RAATTY 1 cut(s) 302
XmnI GAANNNNTTC 1 cut(s) 55
XspI CTAG 1 cut(s) 272
ZrmI AGTACT 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.