RchiOBHm_Chr6g0286311
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003940
Physical Location & Seq
Forward (+)
49660029 .. 49660619
591 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25679

Sequence Viewer

Length: 492 bp
ATGGAGATCTTCATCTGTGACCTTGAAAAAGCCGGTCATAGTTTCAACAGAAGGGGTTCGTTTTGGACTGACGATGGCAGGGCGCGCGCGGTTTTCTCAGCATCTTCTGTTAGAGAGGACGATGAGGAAGCTCTTAAATGGGCAGCTCTGCATAGACTTCCTACCTTCACTCGTTTGAAAAAAGGGTTGCTCACTACTCCACAAGGCCATGCCAACGAAGTCGATGTGCATCACCTTGAGCTCCAAGAAAAGAAAGACTTGATCGAGAGGCTAGTGGGAGTTGCTGAGGAGGATCATGAGAAATTTTTGTTGAGGCTCAAGAGCCGAATCGATAGAGTTGGAATTAGTCTTCCTACAATTGAAGTTACGTTCGAGCATCTGAAAATTGCGGCTGAAACTCATGTTGGAGGCAGGGCTCTGCCTTCTGTCTTCAATTGTTGTGTTAATGTATTGGAGGTACTAATAGACTACCACATTTCAAGTTTTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

163

Amino Acids

18.46

Weight (kDa)

5.98

Isoelectric Point (pI)

36.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 96 - 145 1.5e-06 ABC-transporter N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 85, 87, 89
AciI CCGC 2 cut(s) 89, 389
AclWI GGATC 1 cut(s) 300
AcsI RAATTY 1 cut(s) 302
AfaI GTAC 1 cut(s) 459
AgsI TTSAA 6 cut(s) 26, 46, 178, 362, 433, 480
AjuI GAANNNNNNNTTGG 2 cut(s) 387, 419
AluBI AGCT 3 cut(s) 131, 146, 241
AluI AGCT 3 cut(s) 131, 146, 241
Alw21I GWGCWC 1 cut(s) 243
AlwI GGATC 1 cut(s) 300
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 302
Asp700I GAANNNNTTC 1 cut(s) 55
AspLEI GCGC 3 cut(s) 85, 87, 89
AsuHPI GGTGA 1 cut(s) 224
BanII GRGCYC 2 cut(s) 243, 418
BbsI GAAGAC 2 cut(s) 341, 421
Bbv12I GWGCWC 1 cut(s) 243
BbvCI CCTCAGC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 155
BccI CCATC 1 cut(s) 68
BfaI CTAG 1 cut(s) 272
BglII AGATCT 1 cut(s) 6
BisI GCNGC 2 cut(s) 144, 390
BlsI GCNGC 2 cut(s) 145, 391
BmsI GCATC 3 cut(s) 110, 238, 385
BpiI GAAGAC 2 cut(s) 341, 421
Bpu10I CCTNAGC 1 cut(s) 285
BpuEI CTTGAG 2 cut(s) 257, 302
Bsa29I ATCGAT 1 cut(s) 330
BsaBI GATNNNNATC 2 cut(s) 11, 228
Bse118I RCCGGY 1 cut(s) 32
Bse8I GATNNNNATC 2 cut(s) 11, 228
BseCI ATCGAT 1 cut(s) 330
BseJI GATNNNNATC 2 cut(s) 11, 228
BseMII CTCAG 2 cut(s) 111, 276
BsePI GCGCGC 2 cut(s) 83, 85
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 1 cut(s) 155
Bsh1236I CGCG 3 cut(s) 85, 87, 89
BshFI GGCC 1 cut(s) 207
BshVI ATCGAT 1 cut(s) 330
BsiHKAI GWGCWC 1 cut(s) 243
BsiSI CCGG 1 cut(s) 33
BsnI GGCC 1 cut(s) 207
Bsp1286I GDGCHC 2 cut(s) 243, 418
Bsp143I GATC 3 cut(s) 6, 261, 292
BspACI CCGC 2 cut(s) 89, 389
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 2 cut(s) 110, 277
BspDI ATCGAT 1 cut(s) 330
BspFNI CGCG 3 cut(s) 85, 87, 89
BspHI TCATGA 1 cut(s) 295
BspPI GGATC 1 cut(s) 300
BsrFI RCCGGY 1 cut(s) 32
BssAI RCCGGY 1 cut(s) 32
BssHII GCGCGC 2 cut(s) 83, 85
BssMI GATC 3 cut(s) 6, 261, 292
BstC8I GCNNGC 2 cut(s) 85, 87
BstDEI CTNAG 2 cut(s) 97, 285
BstFNI CGCG 3 cut(s) 85, 87, 89
BstHHI GCGC 3 cut(s) 85, 87, 89
BstKTI GATC 3 cut(s) 9, 264, 295
BstMBI GATC 3 cut(s) 6, 261, 292
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstUI CGCG 3 cut(s) 85, 87, 89
BstV1I GCAGC 1 cut(s) 155
BstV2I GAAGAC 2 cut(s) 341, 421
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
Bsu15I ATCGAT 1 cut(s) 330
BsuRI GGCC 1 cut(s) 207
BsuTUI ATCGAT 1 cut(s) 330
Cac8I GCNNGC 2 cut(s) 85, 87
CciI TCATGA 1 cut(s) 295
CfoI GCGC 3 cut(s) 85, 87, 89
Cfr10I RCCGGY 1 cut(s) 32
ClaI ATCGAT 1 cut(s) 330
Csp6I GTAC 1 cut(s) 458
CviAII CATG 3 cut(s) 209, 296, 401
CviQI GTAC 1 cut(s) 458
DdeI CTNAG 2 cut(s) 97, 285
DpnI GATC 3 cut(s) 8, 263, 294
DpnII GATC 3 cut(s) 6, 261, 292
Ecl136II GAGCTC 1 cut(s) 241
Eco24I GRGCYC 2 cut(s) 243, 418
Eco53kI GAGCTC 1 cut(s) 241
EcoICRI GAGCTC 1 cut(s) 241
EcoT38I GRGCYC 2 cut(s) 243, 418
FaeI CATG 3 cut(s) 212, 299, 404
FaiI YATR 5 cut(s) 39, 153, 210, 297, 402
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FatI CATG 3 cut(s) 208, 295, 400
Fnu4HI GCNGC 2 cut(s) 144, 390
FriOI GRGCYC 2 cut(s) 243, 418
Fsp4HI GCNGC 2 cut(s) 144, 390
FspBI CTAG 1 cut(s) 272
GlaI GCGC 3 cut(s) 84, 86, 88
GluI GCNGC 2 cut(s) 144, 390
HaeIII GGCC 1 cut(s) 207
HapII CCGG 1 cut(s) 33
HhaI GCGC 3 cut(s) 85, 87, 89
Hin1II CATG 3 cut(s) 212, 299, 404
Hin6I GCGC 3 cut(s) 83, 85, 87
HinP1I GCGC 3 cut(s) 83, 85, 87
HinfI GANTC 1 cut(s) 327
HpaII CCGG 1 cut(s) 33
HphI GGTGA 1 cut(s) 224
Hpy188I TCNGA 1 cut(s) 381
Hpy188III TCNNGA 3 cut(s) 265, 296, 319
HpyAV CCTTC 3 cut(s) 45, 175, 432
HpyCH4IV ACGT 1 cut(s) 368
HpyCH4V TGCA 2 cut(s) 151, 229
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HpyF3I CTNAG 2 cut(s) 97, 285
HpySE526I ACGT 1 cut(s) 368
Hsp92II CATG 3 cut(s) 212, 299, 404
HspAI GCGC 3 cut(s) 83, 85, 87
Kzo9I GATC 3 cut(s) 6, 261, 292
LmnI GCTCC 1 cut(s) 246
LpnPI CCDG 3 cut(s) 46, 64, 397
Lsp1109I GCAGC 1 cut(s) 155
LweI GCATC 3 cut(s) 110, 238, 385
MaeI CTAG 1 cut(s) 272
MaeII ACGT 1 cut(s) 368
MaeIII GTNAC 2 cut(s) 17, 364
MalI GATC 3 cut(s) 8, 263, 294
MauBI CGCGCGCG 1 cut(s) 85
MboI GATC 3 cut(s) 6, 261, 292
MboII GAAGA 3 cut(s) 96, 341, 421
MfeI CAATTG 2 cut(s) 357, 433
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 2 cut(s) 243, 418
MluCI AATT 5 cut(s) 302, 342, 357, 384, 433
MmeI TCCRAC 2 cut(s) 319, 385
MnlI CCTC 8 cut(s) 109, 118, 261, 280, 283, 306, 401, 448
MroXI GAANNNNTTC 1 cut(s) 55
MseI TTAA 2 cut(s) 135, 444
MspI CCGG 1 cut(s) 33
MunI CAATTG 2 cut(s) 357, 433
MvnI CGCG 3 cut(s) 85, 87, 89
MwoI GCNNNNNNNGC 1 cut(s) 84
NdeII GATC 3 cut(s) 6, 261, 292
NlaIII CATG 3 cut(s) 212, 299, 404
NmuCI GTSAC 1 cut(s) 17
PagI TCATGA 1 cut(s) 295
PauI GCGCGC 2 cut(s) 83, 85
PdmI GAANNNNTTC 1 cut(s) 55
PfeI GAWTC 1 cut(s) 327
PkrI GCNGC 2 cut(s) 145, 391
Psp124BI GAGCTC 1 cut(s) 243
PsuI RGATCY 1 cut(s) 6
PteI GCGCGC 2 cut(s) 83, 85
RsaI GTAC 1 cut(s) 459
RsaNI GTAC 1 cut(s) 458
SacI GAGCTC 1 cut(s) 243
SaqAI TTAA 2 cut(s) 135, 444
SatI GCNGC 2 cut(s) 144, 390
Sau3AI GATC 3 cut(s) 6, 261, 292
SduI GDGCHC 2 cut(s) 243, 418
SetI ASST 8 cut(s) 24, 133, 148, 167, 237, 243, 371, 459
SfaNI GCATC 3 cut(s) 110, 238, 385
SmlI CTYRAG 2 cut(s) 236, 317
SmoI CTYRAG 2 cut(s) 236, 317
Sse9I AATT 5 cut(s) 302, 342, 357, 384, 433
SsiI CCGC 2 cut(s) 89, 389
SspMI CTAG 1 cut(s) 272
SstI GAGCTC 1 cut(s) 243
TaiI ACGT 1 cut(s) 371
TaqI TCGA 4 cut(s) 222, 264, 330, 372
TasI AATT 5 cut(s) 302, 342, 357, 384, 433
TauI GCSGC 1 cut(s) 392
TfiI GAWTC 1 cut(s) 327
Tru1I TTAA 2 cut(s) 135, 444
Tru9I TTAA 2 cut(s) 135, 444
TseFI GTSAC 1 cut(s) 17
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 17
XapI RAATTY 1 cut(s) 302
XmnI GAANNNNTTC 1 cut(s) 55
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.