Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003940

Physical Location & Seq

Genomic Coordinates Forward (+)

58463136 .. 58481732

Gene Structure 18597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG372200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCCCACTATGGCCTCAACTATGTTCCGCCACTGCTTACTGCTTTAATTGGATTGGTTGGACTCTCACCGTCGAAGAAAAGAGTTGTCAAGATACTTCAAGATGTGAGCGGTATTGTGAAACCATCGAGGATGACACTACTTCTTGGACCTCCTGCATCCGGAAAAACAACACTGCTAAAAGCACTTGCTGGCAAACTTGATAAAGATCTAAGGATGGCACTTTCCCTTTTCCGTTTTATTGCAGCACTTGGAAGAACAGAGGTTGTTGCAAACACCATTGGTTCATTTACATTGCTAATGGTGTTCGTCCTTGGAGGTTTTATTGTTGCTAAAGCTCTTGGGGATACTAAAACTCTAATTGAAACTGATGACTCGCAAAGCAATAAGAAGCGACGATCCAATCCAGAAGGTACTGATATGCAAGTGAGAAATGGTCCAGCCAAAAAAGGAATGGTTTTGCCATTCCAGCCCTTGTCACTTGCTTTTAACCATGTGAACTACTACGTGGATATGCCTGCTCCTTCAATCCCTCAGTCAAATCCAGATTTCAATCAATTTGTTGAACCCAGCCTTCAATCCCTCCGTCAAACCCAGGTTCCAATCAATTCGTCAAACCCATTCTTCCATCCCGTTGAATGCCTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

216

Amino Acids

23.49

Weight (kDa)

9.81

Isoelectric Point (pI)

57.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003940)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29821 FvH4_c11g00010
malus_domestica	MD02G1041000.v1.1 MD08G1141000.v1.1
pyrus_communis	pycom05g17200 pycom14g01660
rosa_chinensis	RchiOBHm_Chr6g0286311
rosa_laevigata	RLG00000012581 RLG00000034948 RLG00000034949
rosa_multiflora	Rmu_co8063796.1_g000001 Rmu_co8130532.1_g000001 Rmu_co8356055.1_g000001 Rmu_co8362065.1_g000001 Rmu_co8518233.1_g000001 Rmu_sc0010154.1_g000003 Rmu_sc0024937.1_g000002 Rmu_sc0041504.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042760 Rroxscaffold_7G00169260 Rroxscaffold_7G00182440
rosa_samantha	Rh2CG374800 Rh5BG371500 Rh5BG371800 Rh5BG372200 Rh5BG372300 Rh5BG372500 Rh5CG394100 Rh5CG394300 Rh6CG295300 Rh6CG408800 Rh6DG395700 Rh6DG396100 Rh7DG199400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	111
AccIII	TCCGGA	1 cut(s)	161
AciI	CCGC	2 cut(s)	29, 111
AclWI	GGATC	1 cut(s)	393
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	7 cut(s)	101, 365, 528, 553, 566, 578, 638
AjnI	CCWGG	1 cut(s)	594
AluBI	AGCT	1 cut(s)	338
AluI	AGCT	1 cut(s)	338
AlwI	GGATC	1 cut(s)	393
Aor13HI	TCCGGA	1 cut(s)	161
AoxI	GGCC	2 cut(s)	3, 13
ApeKI	GCWGC	1 cut(s)	245
Asp700I	GAANNNNTTC	1 cut(s)	642
AspS9I	GGNCC	3 cut(s)	4, 149, 437
AsuHPI	GGTGA	1 cut(s)	60
AvaII	GGWCC	2 cut(s)	149, 437
BbvI	GCAGC	1 cut(s)	257
BccI	CCATC	3 cut(s)	133, 211, 636
BciT130I	CCWGG	1 cut(s)	596
BciVI	GTATCC	1 cut(s)	340
BfuI	GTATCC	1 cut(s)	340
BglII	AGATCT	1 cut(s)	208
BisI	GCNGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	596
Bme18I	GGWCC	2 cut(s)	149, 437
BmgT120I	GGNCC	3 cut(s)	4, 149, 437
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	1 cut(s)	596
BmsI	GCATC	1 cut(s)	167
BsaAI	YACGTR	1 cut(s)	508
BsaBI	GATNNNNATC	2 cut(s)	207, 552
BsaJI	CCNNGG	2 cut(s)	313, 594
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse3DI	GCAATG	1 cut(s)	293
Bse8I	GATNNNNATC	2 cut(s)	207, 552
BseAI	TCCGGA	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	596
BseDI	CCNNGG	2 cut(s)	313, 594
BseGI	GGATG	4 cut(s)	138, 158, 222, 628
BseJI	GATNNNNATC	2 cut(s)	207, 552
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	293
BseMII	CTCAG	1 cut(s)	548
BseXI	GCAGC	1 cut(s)	257
BseYI	CCCAGC	1 cut(s)	569
BshFI	GGCC	2 cut(s)	5, 15
BsiSI	CCGG	1 cut(s)	162
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmI	GAATGC	1 cut(s)	644
BsnI	GGCC	2 cut(s)	5, 15
Bsp13I	TCCGGA	1 cut(s)	161
Bsp143I	GATC	2 cut(s)	208, 398
BspACI	CCGC	2 cut(s)	29, 111
BspANI	GGCC	2 cut(s)	5, 15
BspCNI	CTCAG	1 cut(s)	547
BspEI	TCCGGA	1 cut(s)	161
BspLI	GGNNCC	1 cut(s)	600
BspPI	GGATC	1 cut(s)	393
BsrBI	CCGCTC	1 cut(s)	111
BsrDI	GCAATG	1 cut(s)	293
BssECI	CCNNGG	2 cut(s)	313, 594
BssMI	GATC	2 cut(s)	208, 398
BssT1I	CCWWGG	1 cut(s)	313
Bst2UI	CCWGG	1 cut(s)	596
Bst4CI	ACNGT	1 cut(s)	72
BstBAI	YACGTR	1 cut(s)	508
BstC8I	GCNNGC	2 cut(s)	193, 519
BstDEI	CTNAG	2 cut(s)	212, 534
BstF5I	GGATG	4 cut(s)	138, 158, 222, 628
BstKTI	GATC	2 cut(s)	211, 401
BstMBI	GATC	2 cut(s)	208, 398
BstMWI	GCNNNNNNNGC	1 cut(s)	469
BstNI	CCWGG	1 cut(s)	596
BstSCI	CCNGG	1 cut(s)	594
BstV1I	GCAGC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuI	GTATCC	1 cut(s)	340
BsuRI	GGCC	2 cut(s)	5, 15
BtsCI	GGATG	4 cut(s)	138, 158, 222, 628
BtsI	GCAGTG	2 cut(s)	32, 173
BtsIMutI	CAGTG	2 cut(s)	32, 173
Cac8I	GCNNGC	2 cut(s)	193, 519
Cfr13I	GGNCC	3 cut(s)	4, 149, 437
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	1 cut(s)	494
CviJI	RGCY	6 cut(s)	5, 15, 338, 443, 472, 573
CviKI_1	RGCY	6 cut(s)	5, 15, 338, 443, 472, 573
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	2 cut(s)	212, 534
DpnI	GATC	2 cut(s)	210, 400
DpnII	GATC	2 cut(s)	208, 398
EciI	GGCGGA	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	313
Eco47I	GGWCC	2 cut(s)	149, 437
EcoRII	CCWGG	1 cut(s)	594
EcoT14I	CCWWGG	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	1 cut(s)	497
FaiI	YATR	5 cut(s)	12, 24, 422, 495, 515
FatI	CATG	1 cut(s)	493
Fnu4HI	GCNGC	1 cut(s)	246
FokI	GGATG	4 cut(s)	145, 145, 229, 615
Fsp4HI	GCNGC	1 cut(s)	246
GluI	GCNGC	1 cut(s)	246
GsaI	CCCAGC	1 cut(s)	573
HaeIII	GGCC	2 cut(s)	5, 15
HapII	CCGG	1 cut(s)	162
Hin1II	CATG	1 cut(s)	497
HinfI	GANTC	2 cut(s)	63, 374
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	1 cut(s)	60
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188III	TCNNGA	5 cut(s)	91, 101, 162, 407, 545
Hpy8I	GTNNAC	1 cut(s)	499
Hpy99I	CGWCG	2 cut(s)	76, 399
HpyAV	CCTTC	3 cut(s)	404, 534, 584
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	4 cut(s)	158, 245, 272, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	469
HpyF3I	CTNAG	2 cut(s)	212, 534
HpySE526I	ACGT	1 cut(s)	507
Hsp92II	CATG	1 cut(s)	497
Kpn2I	TCCGGA	1 cut(s)	161
Kzo9I	GATC	2 cut(s)	208, 398
LmnI	GCTCC	1 cut(s)	526
Lsp1109I	GCAGC	1 cut(s)	257
LweI	GCATC	1 cut(s)	167
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	1 cut(s)	477
MalI	GATC	2 cut(s)	210, 400
MbiI	CCGCTC	1 cut(s)	111
MboI	GATC	2 cut(s)	208, 398
MboII	GAAGA	3 cut(s)	88, 267, 616
MflI	RGATCY	1 cut(s)	208
MluCI	AATT	4 cut(s)	48, 360, 557, 607
MlyI	GAGTC	2 cut(s)	57, 368
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	7 cut(s)	26, 123, 162, 256, 311, 543, 593
MroI	TCCGGA	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	642
MseI	TTAA	2 cut(s)	47, 489
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	596
Mva1269I	GAATGC	1 cut(s)	644
MvaI	CCWGG	1 cut(s)	596
MwoI	GCNNNNNNNGC	1 cut(s)	469
NdeII	GATC	2 cut(s)	208, 398
NlaIII	CATG	1 cut(s)	497
NlaIV	GGNNCC	1 cut(s)	600
NmuCI	GTSAC	1 cut(s)	477
PctI	GAATGC	1 cut(s)	644
PdmI	GAANNNNTTC	1 cut(s)	642
PkrI	GCNGC	1 cut(s)	247
PleI	GAGTC	2 cut(s)	57, 368
PpsI	GAGTC	2 cut(s)	57, 368
Ppu21I	YACGTR	1 cut(s)	508
Psp6I	CCWGG	1 cut(s)	594
PspFI	CCCAGC	1 cut(s)	569
PspGI	CCWGG	1 cut(s)	594
PspN4I	GGNNCC	1 cut(s)	600
PspPI	GGNCC	3 cut(s)	4, 149, 437
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
SaqAI	TTAA	2 cut(s)	47, 489
SatI	GCNGC	1 cut(s)	246
Sau3AI	GATC	2 cut(s)	208, 398
Sau96I	GGNCC	3 cut(s)	4, 149, 437
SchI	GAGTC	2 cut(s)	57, 368
ScrFI	CCNGG	1 cut(s)	596
SetI	ASST	7 cut(s)	154, 267, 322, 340, 415, 510, 600
SfaNI	GCATC	1 cut(s)	167
SinI	GGWCC	2 cut(s)	149, 437
Sse9I	AATT	4 cut(s)	48, 360, 557, 607
SsiI	CCGC	2 cut(s)	29, 111
StyD4I	CCNGG	1 cut(s)	594
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	1 cut(s)	72
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	2 cut(s)	74, 128
TasI	AATT	4 cut(s)	48, 360, 557, 607
Tru1I	TTAA	2 cut(s)	47, 489
Tru9I	TTAA	2 cut(s)	47, 489
TscAI	CASTG	2 cut(s)	39, 180
TseFI	GTSAC	1 cut(s)	477
TseI	GCWGC	1 cut(s)	245
Tsp45I	GTSAC	1 cut(s)	477
TspDTI	ATGAA	1 cut(s)	276
TspGWI	ACGGA	2 cut(s)	224, 575
TspRI	CASTG	2 cut(s)	39, 180
VpaK11BI	GGWCC	2 cut(s)	149, 437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XmnI	GAANNNNTTC	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.