Rroxscaffold_7G00169260
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003940
Physical Location & Seq
Reverse (-)
9948100 .. 9949022
923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00169260.1

Sequence Viewer

Length: 492 bp
ATGTGGAGAAACGAGGATACTTCAATGGAATCTTTCTCCAAGTCTTCTCGTGAAGAAGACGATGAAGAATCTCTCAAATGGGCTGCTATTGAGAGATTGCCTACTTATTTACGCATAAGGAGAAGTATACTCGCTGATCAAGAGGAGGGTAGAGCAAGAGAAATTGATGTCAAGGATCTTGGATTACTAGAGAGGAAGAATTTGTTGGAGAGGTTAGTGAAGATTGCCGAGGAAGATAATGAGAAATTCTTGTTCAAGCTCAGGGACCGCATGAATAGAGTTGGACTTGTATTTCCAACAACTGAAGTGCGGTTCGAGCACTTAAATGTTGAGGCAGAAGCTTATGTAGGAAGCAGGGCATTACCTACAATGTTCAACTTCTCCATGAATATATTAGAGGGGCTCTTGAATTGCGCTCATCTTCTTCCTAGTAGAAAGAAACCTTTGCCAATCCTGCATGGTGTAAGTGGAATAATCAAGCCAAGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

163

Amino Acids

19.04

Weight (kDa)

6.86

Isoelectric Point (pI)

49.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 77 - 127 3.1e-08 ABC-transporter N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 127
AciI CCGC 2 cut(s) 268, 310
AclWI GGATC 1 cut(s) 183
AcsI RAATTY 2 cut(s) 199, 245
AcuI CTGAAG 1 cut(s) 324
AgsI TTSAA 4 cut(s) 24, 256, 376, 409
AjuI GAANNNNNNNTTGG 2 cut(s) 188, 220
AluBI AGCT 2 cut(s) 259, 341
AluI AGCT 2 cut(s) 259, 341
Alw21I GWGCWC 1 cut(s) 321
AlwI GGATC 1 cut(s) 183
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 2 cut(s) 199, 245
AspLEI GCGC 1 cut(s) 416
AspS9I GGNCC 1 cut(s) 265
AvaII GGWCC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 405
BauI CACGAG 1 cut(s) 48
BbsI GAAGAC 2 cut(s) 36, 63
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 1 cut(s) 70
BciVI GTATCC 1 cut(s) 10
BclI TGATCA 1 cut(s) 136
BfaI CTAG 2 cut(s) 188, 429
BfuI GTATCC 1 cut(s) 10
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 265
BmiI GGNNCC 1 cut(s) 266
BpiI GAAGAC 2 cut(s) 36, 63
Bpu10I CCTNAGC 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 274
BseRI GAGGAG 1 cut(s) 158
BseXI GCAGC 1 cut(s) 70
BsiHKAI GWGCWC 1 cut(s) 321
BslFI GGGAC 1 cut(s) 278
BsmFI GGGAC 1 cut(s) 278
Bsp1286I GDGCHC 2 cut(s) 321, 405
Bsp143I GATC 2 cut(s) 136, 175
BspACI CCGC 2 cut(s) 268, 310
BspCNI CTCAG 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 266
BspPI GGATC 1 cut(s) 183
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 2 cut(s) 136, 175
BssNAI GTATAC 1 cut(s) 128
BssSI CACGAG 1 cut(s) 48
Bst1107I GTATAC 1 cut(s) 128
Bst2BI CACGAG 1 cut(s) 48
BstDEI CTNAG 1 cut(s) 260
BstHHI GCGC 1 cut(s) 416
BstKTI GATC 2 cut(s) 139, 178
BstMBI GATC 2 cut(s) 136, 175
BstMWI GCNNNNNNNGC 2 cut(s) 316, 454
BstV1I GCAGC 1 cut(s) 70
BstV2I GAAGAC 2 cut(s) 36, 63
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BstZ17I GTATAC 1 cut(s) 128
BsuI GTATCC 1 cut(s) 10
CfoI GCGC 1 cut(s) 416
Cfr13I GGNCC 1 cut(s) 265
CviAII CATG 3 cut(s) 271, 385, 458
CviJI RGCY 5 cut(s) 83, 259, 341, 403, 481
CviKI_1 RGCY 5 cut(s) 83, 259, 341, 403, 481
DdeI CTNAG 1 cut(s) 260
DpnI GATC 2 cut(s) 138, 177
DpnII GATC 2 cut(s) 136, 175
Eco24I GRGCYC 1 cut(s) 405
Eco47I GGWCC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 324
EcoT38I GRGCYC 1 cut(s) 405
FaeI CATG 3 cut(s) 274, 388, 461
FaiI YATR 7 cut(s) 116, 128, 272, 345, 386, 392, 459
FaqI GGGAC 1 cut(s) 278
FatI CATG 3 cut(s) 270, 384, 457
FbaI TGATCA 1 cut(s) 136
FblI GTMKAC 1 cut(s) 127
Fnu4HI GCNGC 1 cut(s) 84
FriOI GRGCYC 1 cut(s) 405
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 2 cut(s) 188, 429
GlaI GCGC 1 cut(s) 415
GluI GCNGC 1 cut(s) 84
HhaI GCGC 1 cut(s) 416
Hin1II CATG 3 cut(s) 274, 388, 461
Hin6I GCGC 1 cut(s) 414
HinP1I GCGC 1 cut(s) 414
HindIII AAGCTT 1 cut(s) 339
HinfI GANTC 2 cut(s) 29, 68
Hpy166II GTNNAC 1 cut(s) 128
Hpy188III TCNNGA 3 cut(s) 50, 140, 406
Hpy8I GTNNAC 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 480
HpyCH4V TGCA 1 cut(s) 457
HpyF10VI GCNNNNNNNGC 2 cut(s) 316, 454
HpyF3I CTNAG 1 cut(s) 260
Hsp92II CATG 3 cut(s) 274, 388, 461
HspAI GCGC 1 cut(s) 414
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 2 cut(s) 136, 175
LpnPI CCDG 3 cut(s) 247, 340, 467
Lsp1109I GCAGC 1 cut(s) 70
MaeI CTAG 2 cut(s) 188, 429
MalI GATC 2 cut(s) 138, 177
MboI GATC 2 cut(s) 136, 175
MboII GAAGA 9 cut(s) 36, 65, 68, 77, 208, 232, 245, 413, 416
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 2 cut(s) 321, 405
MluCI AATT 4 cut(s) 162, 199, 245, 409
MmeI TCCRAC 3 cut(s) 186, 262, 320
MnlI CCTC 8 cut(s) 7, 136, 139, 186, 204, 223, 325, 391
MseI TTAA 1 cut(s) 323
MslI CAYNNNNRTG 1 cut(s) 324
MwoI GCNNNNNNNGC 2 cut(s) 316, 454
NdeII GATC 2 cut(s) 136, 175
NlaIII CATG 3 cut(s) 274, 388, 461
NlaIV GGNNCC 1 cut(s) 266
NmeAIII GCCGAG 1 cut(s) 253
PfeI GAWTC 2 cut(s) 29, 68
PkrI GCNGC 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 266
PspPI GGNCC 1 cut(s) 265
PsuI RGATCY 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 324
SaqAI TTAA 1 cut(s) 323
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 2 cut(s) 136, 175
Sau96I GGNCC 1 cut(s) 265
SduI GDGCHC 2 cut(s) 321, 405
SetI ASST 6 cut(s) 215, 261, 343, 367, 445, 491
SinI GGWCC 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 324
Sse9I AATT 4 cut(s) 162, 199, 245, 409
SsiI CCGC 2 cut(s) 268, 310
SspMI CTAG 2 cut(s) 188, 429
TaqI TCGA 1 cut(s) 315
TasI AATT 4 cut(s) 162, 199, 245, 409
TfiI GAWTC 2 cut(s) 29, 68
Tru1I TTAA 1 cut(s) 323
Tru9I TTAA 1 cut(s) 323
TseI GCWGC 1 cut(s) 83
TspDTI ATGAA 3 cut(s) 78, 287, 401
VpaK11BI GGWCC 1 cut(s) 265
XapI RAATTY 2 cut(s) 199, 245
XmiI GTMKAC 1 cut(s) 127
XspI CTAG 2 cut(s) 188, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.