Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003940

Physical Location & Seq

Genomic Coordinates Reverse (-)

13901354 .. 13902250

Gene Structure 897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1141000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGAAGTTTTTTCGAGGTCTTCGCGAGCTGAAGATGATGAAGAAGCTCTGAAATGGGCTGCGCTTGAAAGGTTGCCTACTTGTTTACGTGTTGGAAGAGGCTTATTCATTGATGGTGAGGGACAAGCTAGAGAGGTTGATGTGCAGACTCTTGGCTTGTTGGAGAGAAAGACTTTGTTGGAGAGGCTGGTGAGCAATGCAGAGAAAGATAATGAGAAGTTCTTGCTGAAGCTCAAGAACCGCATTGATCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

85

Amino Acids

9.69

Weight (kDa)

5.54

Isoelectric Point (pI)

23.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003940)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29821 FvH4_c11g00010
malus_domestica	MD02G1041000.v1.1 MD08G1141000.v1.1
pyrus_communis	pycom05g17200 pycom14g01660
rosa_chinensis	RchiOBHm_Chr6g0286311
rosa_laevigata	RLG00000012581 RLG00000034948 RLG00000034949
rosa_multiflora	Rmu_co8063796.1_g000001 Rmu_co8130532.1_g000001 Rmu_co8356055.1_g000001 Rmu_co8362065.1_g000001 Rmu_co8518233.1_g000001 Rmu_sc0010154.1_g000003 Rmu_sc0024937.1_g000002 Rmu_sc0041504.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042760 Rroxscaffold_7G00169260 Rroxscaffold_7G00182440
rosa_samantha	Rh2CG374800 Rh5BG371500 Rh5BG371800 Rh5BG372200 Rh5BG372300 Rh5BG372500 Rh5CG394100 Rh5CG394300 Rh6CG295300 Rh6CG408800 Rh6DG395700 Rh6DG396100 Rh7DG199400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	25
AciI	CCGC	1 cut(s)	241
AcuI	CTGAAG	2 cut(s)	51, 248
AflIII	ACRYGT	1 cut(s)	88
AgsI	TTSAA	1 cut(s)	68
AluBI	AGCT	4 cut(s)	29, 47, 128, 232
AluI	AGCT	4 cut(s)	29, 47, 128, 232
ApeKI	GCWGC	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	64
AsuHPI	GGTGA	2 cut(s)	128, 202
BbsI	GAAGAC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	1 cut(s)	107
BfaI	CTAG	1 cut(s)	129
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
BpiI	GAAGAC	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	218
BsaAI	YACGTR	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	202
BseMI	GCAATG	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	46
BsgI	GTGCAG	1 cut(s)	164
Bsh1236I	CGCG	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	135
Bsp143I	GATC	1 cut(s)	247
Bsp68I	TCGCGA	1 cut(s)	25
BspACI	CCGC	1 cut(s)	241
BspFNI	CGCG	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	202
BssMI	GATC	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	91
BstBAI	YACGTR	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	27
BstFNI	CGCG	1 cut(s)	25
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	247
BstUI	CGCG	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	1 cut(s)	12
BtuMI	TCGCGA	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	27
CfoI	GCGC	1 cut(s)	64
CviJI	RGCY	8 cut(s)	29, 47, 59, 102, 128, 156, 187, 232
CviKI_1	RGCY	8 cut(s)	29, 47, 59, 102, 128, 156, 187, 232
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Eco57I	CTGAAG	2 cut(s)	51, 248
FaqI	GGGAC	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	129
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	60
HhaI	GCGC	1 cut(s)	64
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HinfI	GANTC	1 cut(s)	148
HphI	GGTGA	2 cut(s)	128, 202
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	2 cut(s)	24, 235
Hpy8I	GTNNAC	1 cut(s)	86
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	2 cut(s)	145, 200
HpySE526I	ACGT	1 cut(s)	88
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	1 cut(s)	247
LpnPI	CCDG	1 cut(s)	173
Lsp1109I	GCAGC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	1 cut(s)	88
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	4 cut(s)	12, 44, 53, 108
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	3 cut(s)	73, 141, 159
MnlI	CCTC	5 cut(s)	9, 92, 112, 127, 177
MvnI	CGCG	1 cut(s)	25
NdeII	GATC	1 cut(s)	247
NruI	TCGCGA	1 cut(s)	25
PkrI	GCNGC	1 cut(s)	61
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
Ppu21I	YACGTR	1 cut(s)	89
RruI	TCGCGA	1 cut(s)	25
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	1 cut(s)	247
SchI	GAGTC	1 cut(s)	142
SetI	ASST	8 cut(s)	20, 31, 49, 74, 91, 130, 138, 234
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SsiI	CCGC	1 cut(s)	241
SspMI	CTAG	1 cut(s)	129
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	1 cut(s)	14
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	2 cut(s)	54, 97
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.