RLG00000034949

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003940
Physical Location & Seq
Reverse (-)
57509449 .. 57510071
623 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034949

Sequence Viewer

Length: 438 bp
ATGTTCTTCCAAGAGATGGAAACAAAACCAAAGCAGCTATTGGAGCTTGCATTGACAAGTCACGCCCTTGAAAAGCCCGAGTTATTTGAAGCTTGCATCGCTCACATTGAAGAAAAGAATATGGGAAAGAATAGAACAGCCGAGATGTCATGTACAACTTTTTGTTTCTCTGCTATGTCTGAGGAGGAGCTGGAGCGTAAGAAAAATTACAACAGTGATCAAAGACTCACGCGTATCATTAGAGTATTGGAGCAAGGTCGTAAAACACAGTTGCGAAAGAAATCAAAACATCAAGTAATAAAGCTCGAGTGTCTCCCCAAAGAAGATGCAAGGAGCATTGAGTCGCTGATGAATGATATTGAAGGGGAGATGCAATCAAATTCAGGAAGCAGCAGCAAGCAAGGAGGGAAGAAAATCGATCAGGCACAAAAGGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.65

Weight (kDa)

8.32

Isoelectric Point (pI)

64.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 16
AccII CGCG 1 cut(s) 232
AcsI RAATTY 1 cut(s) 379
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 16
AflIII ACRYGT 1 cut(s) 230
AgsI TTSAA 4 cut(s) 71, 89, 110, 362
AluBI AGCT 5 cut(s) 37, 46, 92, 190, 304
AluI AGCT 5 cut(s) 37, 46, 92, 190, 304
Alw26I GTCTC 1 cut(s) 317
Ama87I CYCGRG 2 cut(s) 77, 305
ApeKI GCWGC 3 cut(s) 34, 390, 393
ApoI RAATTY 1 cut(s) 379
AvaI CYCGRG 2 cut(s) 77, 305
BbvI GCAGC 3 cut(s) 46, 402, 405
BccI CCATC 1 cut(s) 10
BclI TGATCA 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 317
BisI GCNGC 3 cut(s) 35, 391, 394
BlsI GCNGC 3 cut(s) 36, 392, 395
BmeT110I CYCGRG 2 cut(s) 77, 305
BmsI GCATC 3 cut(s) 105, 316, 360
BpmI CTGGAG 1 cut(s) 212
Bsa29I ATCGAT 1 cut(s) 417
Bsc4I CCNNNNNNNGG 1 cut(s) 16
BseCI ATCGAT 1 cut(s) 417
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 171
BseRI GAGGAG 2 cut(s) 197, 200
BseXI GCAGC 3 cut(s) 46, 402, 405
Bsh1236I CGCG 1 cut(s) 232
BshVI ATCGAT 1 cut(s) 417
BsiHKCI CYCGRG 2 cut(s) 77, 305
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 1 cut(s) 317
BsoBI CYCGRG 2 cut(s) 77, 305
Bsp1407I TGTACA 1 cut(s) 152
Bsp143I GATC 2 cut(s) 217, 418
BspCNI CTCAG 1 cut(s) 172
BspDI ATCGAT 1 cut(s) 417
BspFNI CGCG 1 cut(s) 232
BsrGI TGTACA 1 cut(s) 152
BssMI GATC 2 cut(s) 217, 418
Bst4CI ACNGT 2 cut(s) 215, 270
BstAUI TGTACA 1 cut(s) 152
BstC8I GCNNGC 3 cut(s) 48, 94, 398
BstDEI CTNAG 1 cut(s) 180
BstFNI CGCG 1 cut(s) 232
BstKTI GATC 2 cut(s) 220, 421
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 2 cut(s) 217, 418
BstMWI GCNNNNNNNGC 3 cut(s) 43, 98, 431
BstUI CGCG 1 cut(s) 232
BstV1I GCAGC 3 cut(s) 46, 402, 405
Bsu15I ATCGAT 1 cut(s) 417
BsuTUI ATCGAT 1 cut(s) 417
BtgZI GCGATG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 220
Cac8I GCNNGC 3 cut(s) 48, 94, 398
ClaI ATCGAT 1 cut(s) 417
Csp6I GTAC 1 cut(s) 153
CviAII CATG 1 cut(s) 150
CviJI RGCY 7 cut(s) 37, 46, 76, 92, 140, 190, 304
CviKI_1 RGCY 7 cut(s) 37, 46, 76, 92, 140, 190, 304
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 1 cut(s) 180
DpnI GATC 2 cut(s) 219, 420
DpnII GATC 2 cut(s) 217, 418
Eco88I CYCGRG 2 cut(s) 77, 305
FaeI CATG 1 cut(s) 153
FaiI YATR 3 cut(s) 122, 151, 176
FatI CATG 1 cut(s) 149
FbaI TGATCA 1 cut(s) 217
Fnu4HI GCNGC 3 cut(s) 35, 391, 394
Fsp4HI GCNGC 3 cut(s) 35, 391, 394
GluI GCNGC 3 cut(s) 35, 391, 394
GsuI CTGGAG 1 cut(s) 212
Hin1II CATG 1 cut(s) 153
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 2 cut(s) 225, 341
Hpy188I TCNGA 1 cut(s) 181
Hpy188III TCNNGA 1 cut(s) 384
HpyAV CCTTC 1 cut(s) 356
HpyCH4III ACNGT 2 cut(s) 215, 270
HpyCH4V TGCA 4 cut(s) 50, 96, 329, 373
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 98, 431
HpyF3I CTNAG 1 cut(s) 180
Hsp92II CATG 1 cut(s) 153
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 2 cut(s) 217, 418
LmnI GCTCC 5 cut(s) 43, 187, 193, 250, 333
LpnPI CCDG 3 cut(s) 176, 369, 407
Lsp1109I GCAGC 3 cut(s) 46, 402, 405
LweI GCATC 3 cut(s) 105, 316, 360
MaeIII GTNAC 1 cut(s) 59
MalI GATC 2 cut(s) 219, 420
MboI GATC 2 cut(s) 217, 418
MboII GAAGA 3 cut(s) 122, 335, 421
MluCI AATT 2 cut(s) 205, 379
MluI ACGCGT 1 cut(s) 230
MlyI GAGTC 2 cut(s) 219, 350
MnlI CCTC 3 cut(s) 175, 178, 398
MvnI CGCG 1 cut(s) 232
MwoI GCNNNNNNNGC 3 cut(s) 43, 98, 431
NdeII GATC 2 cut(s) 217, 418
NlaIII CATG 1 cut(s) 153
NmeAIII GCCGAG 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 59
PaeR7I CTCGAG 1 cut(s) 305
PflMI CCANNNNNTGG 1 cut(s) 16
PkrI GCNGC 3 cut(s) 36, 392, 395
PleI GAGTC 2 cut(s) 219, 349
PpsI GAGTC 2 cut(s) 219, 349
PspXI VCTCGAGB 1 cut(s) 305
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SatI GCNGC 3 cut(s) 35, 391, 394
Sau3AI GATC 2 cut(s) 217, 418
SchI GAGTC 2 cut(s) 219, 350
SetI ASST 6 cut(s) 39, 48, 94, 192, 259, 306
SfaNI GCATC 3 cut(s) 105, 316, 360
Sfr274I CTCGAG 1 cut(s) 305
SlaI CTCGAG 1 cut(s) 305
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 2 cut(s) 205, 379
TaaI ACNGT 2 cut(s) 215, 270
TaqI TCGA 2 cut(s) 306, 417
TasI AATT 2 cut(s) 205, 379
TatI WGTACW 1 cut(s) 152
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 3 cut(s) 34, 390, 393
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 365
TspRI CASTG 1 cut(s) 220
Van91I CCANNNNNTGG 1 cut(s) 16
XapI RAATTY 1 cut(s) 379
XhoI CTCGAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.