Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8130532.1

Orthogroup ID

OG0003940

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 622

Gene Structure 622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8130532.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 371 bp

atgttgaggaatgtgatgagcaatggaagggttgtggctgaagaagttgacgttgcgcatcttggggatcaagataagaagcagttgatggaaaacatacttaaggttattgaggaggacaacgagaagttcttgaagaagctcagggccagaaacgacagggttggtattgatattcctaaagttgaggttagattccagaatttatcaattgagggagatgcgtttgtaggcaccagagcacttccgactctgtggaattccaccttgaacgcagtcgagggaatactgggacttgttggactttcaccatcgaagaaaagagttgtaaagatactacaagatgttagtggtattatcaaaccagcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

123

Amino Acids

13.66

Weight (kDa)

9.0

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003940)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29821 FvH4_c11g00010
malus_domestica	MD02G1041000.v1.1 MD08G1141000.v1.1
pyrus_communis	pycom05g17200 pycom14g01660
rosa_chinensis	RchiOBHm_Chr6g0286311
rosa_laevigata	RLG00000012581 RLG00000034948 RLG00000034949
rosa_multiflora	Rmu_co8063796.1_g000001 Rmu_co8130532.1_g000001 Rmu_co8356055.1_g000001 Rmu_co8362065.1_g000001 Rmu_co8518233.1_g000001 Rmu_sc0010154.1_g000003 Rmu_sc0024937.1_g000002 Rmu_sc0041504.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042760 Rroxscaffold_7G00169260 Rroxscaffold_7G00182440
rosa_samantha	Rh2CG374800 Rh5BG371500 Rh5BG371800 Rh5BG372200 Rh5BG372300 Rh5BG372500 Rh5CG394100 Rh5CG394300 Rh6CG295300 Rh6CG408800 Rh6DG395700 Rh6DG396100 Rh7DG199400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	57
AccB1I	GGYRCC	1 cut(s)	233
AclWI	GGATC	1 cut(s)	75
AcsI	RAATTY	2 cut(s)	202, 259
AcuI	CTGAAG	1 cut(s)	60
AflII	CTTAAG	1 cut(s)	101
AgsI	TTSAA	2 cut(s)	136, 271
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
Alw21I	GWGCWC	1 cut(s)	244
AlwI	GGATC	1 cut(s)	75
AoxI	GGCC	1 cut(s)	147
ApoI	RAATTY	2 cut(s)	202, 259
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	147
AsuHPI	GGTGA	1 cut(s)	300
BanI	GGYRCC	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	244
BccI	CCATC	2 cut(s)	82, 319
BfrI	CTTAAG	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	147
BmiI	GGNNCC	1 cut(s)	235
BmrI	ACTGGG	1 cut(s)	299
BmsI	GCATC	2 cut(s)	67, 211
BmuI	ACTGGG	1 cut(s)	299
Bpu10I	CCTNAGC	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	294
Bse3DI	GCAATG	1 cut(s)	28
BseMI	GCAATG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	157
BseNI	ACTGG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	128
BshFI	GGCC	1 cut(s)	149
BshNI	GGYRCC	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	244
BslFI	GGGAC	1 cut(s)	306
BsmFI	GGGAC	1 cut(s)	306
BsnI	GGCC	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	67
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	235
BspPI	GGATC	1 cut(s)	75
BspT107I	GGYRCC	1 cut(s)	233
BspTI	CTTAAG	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	294
BssMI	GATC	1 cut(s)	67
BstAFI	CTTAAG	1 cut(s)	101
BstDEI	CTNAG	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	1 cut(s)	70
BstMBI	GATC	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	149
CfoI	GCGC	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	147
CviJI	RGCY	3 cut(s)	38, 142, 149
CviKI_1	RGCY	3 cut(s)	38, 142, 149
DdeI	CTNAG	1 cut(s)	143
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	60
EcoRI	GAATTC	1 cut(s)	259
FaiI	YATR	1 cut(s)	98
FaqI	GGGAC	1 cut(s)	306
FspI	TGCGCA	1 cut(s)	57
GlaI	GCGC	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	149
HhaI	GCGC	1 cut(s)	58
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	2 cut(s)	195, 250
HphI	GGTGA	1 cut(s)	300
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	249
Hpy188III	TCNNGA	3 cut(s)	71, 133, 199
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	1 cut(s)	21
HpyCH4IV	ACGT	1 cut(s)	51
HpyF3I	CTNAG	1 cut(s)	143
HpySE526I	ACGT	1 cut(s)	51
HspAI	GCGC	1 cut(s)	56
Kzo9I	GATC	1 cut(s)	67
LpnPI	CCDG	6 cut(s)	130, 145, 163, 212, 250, 275
LweI	GCATC	2 cut(s)	67, 211
MaeII	ACGT	1 cut(s)	51
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MboII	GAAGA	3 cut(s)	53, 148, 328
MfeI	CAATTG	1 cut(s)	210
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	3 cut(s)	202, 210, 259
MlyI	GAGTC	1 cut(s)	244
MmeI	TCCRAC	2 cut(s)	272, 280
MnlI	CCTC	5 cut(s)	106, 109, 181, 208, 274
MseI	TTAA	1 cut(s)	102
MspCI	CTTAAG	1 cut(s)	101
MunI	CAATTG	1 cut(s)	210
NdeII	GATC	1 cut(s)	67
NlaIV	GGNNCC	1 cut(s)	235
NsbI	TGCGCA	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	195
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	102
Sau3AI	GATC	1 cut(s)	67
Sau96I	GGNCC	1 cut(s)	147
SchI	GAGTC	1 cut(s)	244
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	5 cut(s)	54, 108, 144, 192, 269
SfaNI	GCATC	2 cut(s)	67, 211
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	3 cut(s)	202, 210, 259
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	2 cut(s)	279, 314
TasI	AATT	3 cut(s)	202, 210, 259
TfiI	GAWTC	1 cut(s)	195
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
Vha464I	CTTAAG	1 cut(s)	101
XapI	RAATTY	2 cut(s)	202, 259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.