Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003940

Physical Location & Seq

Genomic Coordinates Forward (+)

59425834 .. 59444473

Gene Structure 18640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG408800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGAAGTTTTCTCCAAGTCTTCTCGTGAAGAAGACGATGAAGAAGCTCTGAAATGGGCTGCTATTGAGAGATTGCCAACTTACTTGCGCATAAGGAGAGGCATACTCACGGACCAAGACGCGGGTAAAGCCAGAGAAATTGATGTCAAAAATTTAGGACTTATAGAAAGGAGGGATTTGCTGGAGAGGCTGGTGAAGATTGCAGATGAAGATAATGAGAAGTTCTTGTTCAAGCTCAGGGACCGCATGGATAGAGTTGGACTTGAATTTCCAACAACTGAGGTGCGGTTTGACCATTTAAGTGTCGAAGCAGAAGCTTATGTAGGGAGTAGGGCATTACCTACAATGCTCAACTTCTCCATTAACATCTTAGAGGGGTTGTTGAATTACCTTCATGTTCTTCCAAGTAGAAAGAAGCGATTGCCAATCCTCCACGGTGTTAGTGGAATTATCAAGCCAAGAAGAATGACACTGCTTTTAGGCCCTCCAAGCTCTGGAAAGACCACATTAGTACTGGCTTTGGCTGGAAAACTCGGTAAAGATCTGAAACTTTCGGGGAGAGTTACATACAATGGAGAGGGGATGGAAGAGTTTGTACCAGAGAGGACATCAGCATATATTAGTCAACATGATCTTCACATACCAGAGATGACAGTGAGAGAAACTCTGGCTTTTTCAGCAAGATGTCAAGGAGTCGGACCACGTTATGAAATGTTGGTAGAATTATCAAGGAGAGAAAAGACTGCAAATATAATGCCAGATCCTGATCTTGATGTTTACATGAAGGCAGCTGCACTAGAAGGACAGGAAACCAATGTAATTACAGATTATATACTCAAGGTTTTGGGGCTTGAAGTTTGTGCTGACACTATAGTAGGGGATCAAATGAGACGAGGTATCTCTGGGGGACAAAGAAAGCGACTCACCACATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

311

Amino Acids

35.19

Weight (kDa)

6.99

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_trans_N	PF14510	69 - 119	5.2e-08	ABC-transporter N-terminal
ABC_tran	PF00005	144 - 308	1.2e-12	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003940)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29821 FvH4_c11g00010
malus_domestica	MD02G1041000.v1.1 MD08G1141000.v1.1
pyrus_communis	pycom05g17200 pycom14g01660
rosa_chinensis	RchiOBHm_Chr6g0286311
rosa_laevigata	RLG00000012581 RLG00000034948 RLG00000034949
rosa_multiflora	Rmu_co8063796.1_g000001 Rmu_co8130532.1_g000001 Rmu_co8356055.1_g000001 Rmu_co8362065.1_g000001 Rmu_co8518233.1_g000001 Rmu_sc0010154.1_g000003 Rmu_sc0024937.1_g000002 Rmu_sc0041504.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042760 Rroxscaffold_7G00169260 Rroxscaffold_7G00182440
rosa_samantha	Rh2CG374800 Rh5BG371500 Rh5BG371800 Rh5BG372200 Rh5BG372300 Rh5BG372500 Rh5CG394100 Rh5CG394300 Rh6CG295300 Rh6CG408800 Rh6DG395700 Rh6DG396100 Rh7DG199400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	494
AccII	CGCG	1 cut(s)	122
AciI	CCGC	3 cut(s)	122, 244, 286
AclWI	GGATC	2 cut(s)	755, 888
AcsI	RAATTY	2 cut(s)	151, 266
AfaI	GTAC	2 cut(s)	513, 597
AfiI	CCNNNNNNNGG	2 cut(s)	121, 494
AgsI	TTSAA	4 cut(s)	232, 266, 385, 854
AluBI	AGCT	5 cut(s)	47, 235, 317, 492, 791
AluI	AGCT	5 cut(s)	47, 235, 317, 492, 791
Alw26I	GTCTC	1 cut(s)	883
AlwI	GGATC	2 cut(s)	755, 888
AlwNI	CAGNNNCTG	1 cut(s)	764
AoxI	GGCC	1 cut(s)	481
ApeKI	GCWGC	3 cut(s)	59, 788, 791
ApoI	RAATTY	2 cut(s)	151, 266
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	4 cut(s)	112, 241, 482, 698
AsuHPI	GGTGA	2 cut(s)	205, 916
AvaII	GGWCC	3 cut(s)	112, 241, 698
BarI	GAAGNNNNNNTAC	2 cut(s)	579, 611
BauI	CACGAG	1 cut(s)	24
BbsI	GAAGAC	2 cut(s)	12, 39
BbvI	GCAGC	3 cut(s)	46, 778, 800
BccI	CCATC	1 cut(s)	577
BcoDI	GTCTC	1 cut(s)	883
BfaI	CTAG	1 cut(s)	797
BfmI	CTRYAG	1 cut(s)	870
BglII	AGATCT	1 cut(s)	541
BisI	GCNGC	3 cut(s)	60, 789, 792
BlsI	GCNGC	3 cut(s)	61, 790, 793
BmcAI	AGTACT	1 cut(s)	513
Bme18I	GGWCC	3 cut(s)	112, 241, 698
BmgT120I	GGNCC	4 cut(s)	112, 241, 482, 698
BmiI	GGNNCC	1 cut(s)	242
BpiI	GAAGAC	2 cut(s)	12, 39
BplI	GAGNNNNNCTC	4 cut(s)	90, 122, 649, 681
BpmI	CTGGAG	1 cut(s)	203
Bpu10I	CCTNAGC	1 cut(s)	236
BpuEI	CTTGAG	1 cut(s)	821
BsaBI	GATNNNNATC	1 cut(s)	765
BsaJI	CCNNGG	1 cut(s)	433
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 494
Bse1I	ACTGG	1 cut(s)	519
Bse8I	GATNNNNATC	1 cut(s)	765
BseDI	CCNNGG	1 cut(s)	433
BseGI	GGATG	1 cut(s)	588
BseJI	GATNNNNATC	1 cut(s)	765
BseLI	CCNNNNNNNGG	2 cut(s)	121, 494
BseMII	CTCAG	2 cut(s)	250, 270
BseNI	ACTGG	1 cut(s)	519
BseXI	GCAGC	3 cut(s)	46, 778, 800
BsgI	GTGCAG	1 cut(s)	777
Bsh1236I	CGCG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	483
BslFI	GGGAC	2 cut(s)	254, 921
BslI	CCNNNNNNNGG	2 cut(s)	121, 494
BsmAI	GTCTC	1 cut(s)	883
BsmBI	CGTCTC	1 cut(s)	883
BsmFI	GGGAC	2 cut(s)	254, 921
BsnI	GGCC	1 cut(s)	483
Bsp143I	GATC	5 cut(s)	541, 631, 760, 766, 880
BspACI	CCGC	3 cut(s)	122, 244, 286
BspANI	GGCC	1 cut(s)	483
BspCNI	CTCAG	2 cut(s)	249, 271
BspFNI	CGCG	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	242
BspPI	GGATC	2 cut(s)	755, 888
BsrI	ACTGG	1 cut(s)	519
BssECI	CCNNGG	1 cut(s)	433
BssMI	GATC	5 cut(s)	541, 631, 760, 766, 880
BssSI	CACGAG	1 cut(s)	24
Bst2BI	CACGAG	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	437, 655
Bst6I	CTCTTC	1 cut(s)	582
BstDEI	CTNAG	3 cut(s)	236, 279, 370
BstDSI	CCRYGG	1 cut(s)	433
BstF5I	GGATG	1 cut(s)	588
BstFNI	CGCG	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	5 cut(s)	544, 634, 763, 769, 883
BstMAI	GTCTC	1 cut(s)	883
BstMBI	GATC	5 cut(s)	541, 631, 760, 766, 880
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 187, 489, 677
BstSFI	CTRYAG	1 cut(s)	870
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	3 cut(s)	46, 778, 800
BstV2I	GAAGAC	2 cut(s)	12, 39
BstX2I	RGATCY	2 cut(s)	541, 760
BstYI	RGATCY	2 cut(s)	541, 760
BsuRI	GGCC	1 cut(s)	483
BtgI	CCRYGG	1 cut(s)	433
BtsCI	GGATG	1 cut(s)	588
BtsI	GCAGTG	1 cut(s)	470
BtsIMutI	CAGTG	2 cut(s)	470, 660
CaiI	CAGNNNCTG	1 cut(s)	764
CfoI	GCGC	1 cut(s)	90
Cfr13I	GGNCC	4 cut(s)	112, 241, 482, 698
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	2 cut(s)	512, 596
CviAII	CATG	5 cut(s)	247, 395, 629, 781, 930
CviQI	GTAC	2 cut(s)	512, 596
DdeI	CTNAG	3 cut(s)	236, 279, 370
DpnI	GATC	5 cut(s)	543, 633, 762, 768, 882
DpnII	GATC	5 cut(s)	541, 631, 760, 766, 880
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
Eco47I	GGWCC	3 cut(s)	112, 241, 698
EcoO109I	RGGNCCY	1 cut(s)	482
Esp3I	CGTCTC	1 cut(s)	883
FaeI	CATG	5 cut(s)	250, 398, 632, 784, 933
FaqI	GGGAC	2 cut(s)	254, 921
FatI	CATG	5 cut(s)	246, 394, 628, 780, 929
FauI	CCCGC	1 cut(s)	115
Fnu4HI	GCNGC	3 cut(s)	60, 789, 792
FokI	GGATG	1 cut(s)	595
Fsp4HI	GCNGC	3 cut(s)	60, 789, 792
FspBI	CTAG	1 cut(s)	797
FspI	TGCGCA	1 cut(s)	89
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	3 cut(s)	60, 789, 792
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	483
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	5 cut(s)	250, 398, 632, 784, 933
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HincII	GTYRAC	1 cut(s)	626
HindII	GTYRAC	1 cut(s)	626
HindIII	AAGCTT	1 cut(s)	315
HinfI	GANTC	2 cut(s)	693, 921
HphI	GGTGA	2 cut(s)	205, 916
Hpy166II	GTNNAC	2 cut(s)	626, 778
Hpy188I	TCNGA	3 cut(s)	51, 546, 698
Hpy188III	TCNNGA	4 cut(s)	26, 495, 764, 770
Hpy8I	GTNNAC	2 cut(s)	626, 778
HpyAV	CCTTC	3 cut(s)	401, 778, 794
HpyCH4III	ACNGT	2 cut(s)	437, 655
HpyCH4IV	ACGT	1 cut(s)	703
HpyCH4V	TGCA	3 cut(s)	203, 746, 794
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 187, 489, 677
HpyF3I	CTNAG	3 cut(s)	236, 279, 370
HpySE526I	ACGT	1 cut(s)	703
Hsp92II	CATG	5 cut(s)	250, 398, 632, 784, 933
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	5 cut(s)	541, 631, 760, 766, 880
Lsp1109I	GCAGC	3 cut(s)	46, 778, 800
MaeI	CTAG	1 cut(s)	797
MaeII	ACGT	1 cut(s)	703
MaeIII	GTNAC	1 cut(s)	562
MalI	GATC	5 cut(s)	543, 633, 762, 768, 882
MboI	GATC	5 cut(s)	541, 631, 760, 766, 880
MflI	RGATCY	2 cut(s)	541, 760
MluCI	AATT	7 cut(s)	138, 151, 266, 385, 447, 722, 819
MlyI	GAGTC	2 cut(s)	702, 915
MmeI	TCCRAC	3 cut(s)	238, 296, 676
MseI	TTAA	2 cut(s)	299, 363
MslI	CAYNNNNRTG	1 cut(s)	300
MspA1I	CMGCKG	1 cut(s)	791
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	4 cut(s)	128, 187, 489, 677
NdeII	GATC	5 cut(s)	541, 631, 760, 766, 880
NlaIII	CATG	5 cut(s)	250, 398, 632, 784, 933
NlaIV	GGNNCC	1 cut(s)	242
NsbI	TGCGCA	1 cut(s)	89
PflMI	CCANNNNNTGG	1 cut(s)	494
PkrI	GCNGC	3 cut(s)	61, 790, 793
PleI	GAGTC	2 cut(s)	701, 915
PpsI	GAGTC	2 cut(s)	701, 915
PspN4I	GGNNCC	1 cut(s)	242
PspPI	GGNCC	4 cut(s)	112, 241, 482, 698
PstNI	CAGNNNCTG	1 cut(s)	764
PsuI	RGATCY	2 cut(s)	541, 760
PvuII	CAGCTG	1 cut(s)	791
RsaI	GTAC	2 cut(s)	513, 597
RsaNI	GTAC	2 cut(s)	512, 596
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	2 cut(s)	299, 363
SatI	GCNGC	3 cut(s)	60, 789, 792
Sau3AI	GATC	5 cut(s)	541, 631, 760, 766, 880
Sau96I	GGNCC	4 cut(s)	112, 241, 482, 698
ScaI	AGTACT	1 cut(s)	513
SchI	GAGTC	2 cut(s)	702, 915
SfcI	CTRYAG	1 cut(s)	870
SinI	GGWCC	3 cut(s)	112, 241, 698
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	836
SmoI	CTYRAG	1 cut(s)	836
Sse9I	AATT	7 cut(s)	138, 151, 266, 385, 447, 722, 819
SsiI	CCGC	3 cut(s)	122, 244, 286
SspMI	CTAG	1 cut(s)	797
TaaI	ACNGT	2 cut(s)	437, 655
TaiI	ACGT	1 cut(s)	706
TaqI	TCGA	1 cut(s)	306
TasI	AATT	7 cut(s)	138, 151, 266, 385, 447, 722, 819
TatI	WGTACW	1 cut(s)	511
Tru1I	TTAA	2 cut(s)	299, 363
Tru9I	TTAA	2 cut(s)	299, 363
TscAI	CASTG	2 cut(s)	477, 660
TseI	GCWGC	3 cut(s)	59, 788, 791
TspDTI	ATGAA	5 cut(s)	54, 222, 383, 723, 797
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	2 cut(s)	477, 660
Van91I	CCANNNNNTGG	1 cut(s)	494
VpaK11BI	GGWCC	3 cut(s)	112, 241, 698
XapI	RAATTY	2 cut(s)	151, 266
XcmI	CCANNNNNNNNNTGG	2 cut(s)	440, 511
XspI	CTAG	1 cut(s)	797
ZrmI	AGTACT	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.