Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8518233.1

Orthogroup ID

OG0003940

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3601

Gene Structure 3601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8518233.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 979 bp

atggaggaagtgtttgtgagtgccacgcactctcgaagaagcagtagagctgaagacgaagaggctctgacttgggctgccattgagaaactgccaacatatgatagactaagaacagggatcatccagtccattgtggagagcgagaatcctcgaaggaaaaacaacaaagtgatgcacaaggaagttgatgttctgaagcttgatgtaaccgaccgtcaagatttcattgacaggattttcaaggatgcagaggaagataatgagaagttcttgaagaagttcagaagcagaattgataaggttgggattagacttcccacagtggaagttaggtttgatcatttgacggtcgaagcagaatgccatattggtaacagagctcttcccactctcccaaatgttgctaggaacattgcagaatcagctcttggtttgattgggattacaacggctaagagaacaaatctaacaatcctcaagaatgccactggcattatcaaaccatcgaggatggctctattattaggtcccccgtcgtcagggaaaacaacccttctgttggcactagctgggaagttggatcctagcttgaagattaaaggagagatcacatacaatgggtataggttgaacgaatttgtaccacagaagacatctgcatatattagccaaaatgatgttcatttaggagagatgactgtcaaagaaaccctagatttttcggcaaggtgccaaggggttggtactcgatatgaacttctgtctgagctagctagaagggaaaaggaagcaagaatatttcccgaggcagaagttgaccttttcatgaaggctactgcaatgggaggagttgagagcagtctcattaccgactacactctcaaaattttggggcttgatatatgcaaggataccattgttggaaacgaaatgcagagagggatttctggtggccaaaagaaacgagtaacgacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

326

Amino Acids

36.47

Weight (kDa)

8.8

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003940)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29821 FvH4_c11g00010
malus_domestica	MD02G1041000.v1.1 MD08G1141000.v1.1
pyrus_communis	pycom05g17200 pycom14g01660
rosa_chinensis	RchiOBHm_Chr6g0286311
rosa_laevigata	RLG00000012581 RLG00000034948 RLG00000034949
rosa_multiflora	Rmu_co8063796.1_g000001 Rmu_co8130532.1_g000001 Rmu_co8356055.1_g000001 Rmu_co8362065.1_g000001 Rmu_co8518233.1_g000001 Rmu_sc0010154.1_g000003 Rmu_sc0024937.1_g000002 Rmu_sc0041504.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042760 Rroxscaffold_7G00169260 Rroxscaffold_7G00182440
rosa_samantha	Rh2CG374800 Rh5BG371500 Rh5BG371800 Rh5BG372200 Rh5BG372300 Rh5BG372500 Rh5CG394100 Rh5CG394300 Rh6CG295300 Rh6CG408800 Rh6DG395700 Rh6DG396100 Rh7DG199400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	732
AclWI	GGATC	3 cut(s)	128, 578, 591
AcoI	YGGCCR	1 cut(s)	955
AcsI	RAATTY	2 cut(s)	638, 888
AcuI	CTGAAG	2 cut(s)	72, 218
AfaI	GTAC	2 cut(s)	645, 748
AfiI	CCNNNNNNNGG	2 cut(s)	542, 562
AgsI	TTSAA	4 cut(s)	244, 277, 595, 634
AjuI	GAANNNNNNNTTGG	6 cut(s)	354, 386, 414, 446, 666, 698
AluBI	AGCT	8 cut(s)	50, 202, 383, 428, 572, 591, 772, 776
AluI	AGCT	8 cut(s)	50, 202, 383, 428, 572, 591, 772, 776
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	1 cut(s)	869
AlwI	GGATC	3 cut(s)	128, 578, 591
Ama87I	CYCGRG	1 cut(s)	806
AoxI	GGCC	1 cut(s)	955
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	2 cut(s)	638, 888
Asp700I	GAANNNNTTC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	530
AsuNHI	GCTAGC	1 cut(s)	772
AvaI	CYCGRG	1 cut(s)	806
AvaII	GGWCC	1 cut(s)	530
BaeI	ACNNNNGTAYC	2 cut(s)	906, 939
BalI	TGGCCA	1 cut(s)	957
BamHI	GGATCC	1 cut(s)	583
BanI	GGYRCC	1 cut(s)	732
BanII	GRGCYC	1 cut(s)	385
BbsI	GAAGAC	2 cut(s)	60, 659
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	2 cut(s)	508, 514
BceAI	ACGGC	1 cut(s)	468
BciVI	GTATCC	1 cut(s)	907
BclI	TGATCA	1 cut(s)	340
BcoDI	GTCTC	1 cut(s)	869
BfaI	CTAG	6 cut(s)	408, 569, 588, 716, 773, 777
BfuI	GTATCC	1 cut(s)	907
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
Bme18I	GGWCC	1 cut(s)	530
BmeT110I	CYCGRG	1 cut(s)	806
BmgT120I	GGNCC	1 cut(s)	530
BmiI	GGNNCC	3 cut(s)	532, 585, 734
BmsI	GCATC	2 cut(s)	165, 238
BmtI	GCTAGC	1 cut(s)	776
BpiI	GAAGAC	2 cut(s)	60, 659
BplI	GAGNNNNNCTC	2 cut(s)	502, 534
BpuEI	CTTGAG	1 cut(s)	464
BsaJI	CCNNGG	2 cut(s)	736, 807
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	542, 562
Bse1I	ACTGG	2 cut(s)	127, 496
Bse3DI	GCAATG	2 cut(s)	414, 849
BseDI	CCNNGG	2 cut(s)	736, 807
BseGI	GGATG	3 cut(s)	123, 253, 519
BseLI	CCNNNNNNNGG	2 cut(s)	542, 562
BseMI	GCAATG	2 cut(s)	414, 849
BseMII	CTCAG	1 cut(s)	759
BseNI	ACTGG	2 cut(s)	127, 496
BseRI	GAGGAG	1 cut(s)	864
BseXI	GCAGC	1 cut(s)	64
BseYI	CCCAGC	1 cut(s)	572
Bsh1285I	CGRYCG	2 cut(s)	217, 354
BshFI	GGCC	1 cut(s)	957
BshNI	GGYRCC	1 cut(s)	732
BsiEI	CGRYCG	2 cut(s)	217, 354
BsiHKAI	GWGCWC	1 cut(s)	385
BsiHKCI	CYCGRG	1 cut(s)	806
BslFI	GGGAC	1 cut(s)	516
BslI	CCNNNNNNNGG	2 cut(s)	542, 562
BsmAI	GTCTC	1 cut(s)	869
BsmFI	GGGAC	1 cut(s)	516
BsmI	GAATGC	2 cut(s)	368, 490
BsnI	GGCC	1 cut(s)	957
BsoBI	CYCGRG	1 cut(s)	806
Bsp1286I	GDGCHC	1 cut(s)	385
Bsp143I	GATC	4 cut(s)	120, 340, 583, 609
BspANI	GGCC	1 cut(s)	957
BspCNI	CTCAG	1 cut(s)	760
BspHI	TCATGA	1 cut(s)	828
BspLI	GGNNCC	3 cut(s)	532, 585, 734
BspOI	GCTAGC	1 cut(s)	776
BspPI	GGATC	3 cut(s)	128, 578, 591
BspQI	GCTCTTC	1 cut(s)	390
BspT107I	GGYRCC	1 cut(s)	732
BsrDI	GCAATG	2 cut(s)	414, 849
BsrI	ACTGG	2 cut(s)	127, 496
BssECI	CCNNGG	2 cut(s)	736, 807
BssMI	GATC	4 cut(s)	120, 340, 583, 609
BssT1I	CCWWGG	1 cut(s)	736
Bst4CI	ACNGT	4 cut(s)	218, 325, 352, 703
Bst6I	CTCTTC	2 cut(s)	54, 390
BstC8I	GCNNGC	1 cut(s)	774
BstDEI	CTNAG	3 cut(s)	110, 456, 768
BstF5I	GGATG	3 cut(s)	123, 253, 519
BstKTI	GATC	4 cut(s)	123, 343, 586, 612
BstMAI	GTCTC	1 cut(s)	869
BstMBI	GATC	4 cut(s)	120, 340, 583, 609
BstMCI	CGRYCG	2 cut(s)	217, 354
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstV1I	GCAGC	1 cut(s)	64
BstV2I	GAAGAC	2 cut(s)	60, 659
BstX2I	RGATCY	1 cut(s)	583
BstXI	CCANNNNNNTGG	1 cut(s)	743
BstYI	RGATCY	1 cut(s)	583
BsuI	GTATCC	1 cut(s)	907
BsuRI	GGCC	1 cut(s)	957
BtsCI	GGATG	3 cut(s)	123, 253, 519
BtsIMutI	CAGTG	2 cut(s)	330, 489
Cac8I	GCNNGC	1 cut(s)	774
CciI	TCATGA	1 cut(s)	828
Cfr13I	GGNCC	1 cut(s)	530
Csp6I	GTAC	2 cut(s)	644, 747
CviAII	CATG	1 cut(s)	829
CviQI	GTAC	2 cut(s)	644, 747
DdeI	CTNAG	3 cut(s)	110, 456, 768
DpnI	GATC	4 cut(s)	122, 342, 585, 611
DpnII	GATC	4 cut(s)	120, 340, 583, 609
EaeI	YGGCCR	1 cut(s)	955
Eam1104I	CTCTTC	2 cut(s)	54, 390
EarI	CTCTTC	2 cut(s)	54, 390
Ecl136II	GAGCTC	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	736
Eco24I	GRGCYC	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	530
Eco53kI	GAGCTC	1 cut(s)	383
Eco57I	CTGAAG	2 cut(s)	72, 218
Eco88I	CYCGRG	1 cut(s)	806
EcoICRI	GAGCTC	1 cut(s)	383
EcoO109I	RGGNCCY	1 cut(s)	530
EcoT14I	CCWWGG	1 cut(s)	736
EcoT38I	GRGCYC	1 cut(s)	385
ErhI	CCWWGG	1 cut(s)	736
FaeI	CATG	1 cut(s)	832
FalI	AAGNNNNNCTT	2 cut(s)	807, 839
FaqI	GGGAC	1 cut(s)	516
FatI	CATG	1 cut(s)	828
FauNDI	CATATG	1 cut(s)	100
FbaI	TGATCA	1 cut(s)	340
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	3 cut(s)	110, 260, 526
FriOI	GRGCYC	1 cut(s)	385
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	6 cut(s)	408, 569, 588, 716, 773, 777
GluI	GCNGC	1 cut(s)	78
GsaI	CCCAGC	1 cut(s)	576
HaeIII	GGCC	1 cut(s)	957
Hin1II	CATG	1 cut(s)	832
HincII	GTYRAC	1 cut(s)	820
HindII	GTYRAC	1 cut(s)	820
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	2 cut(s)	148, 422
Hpy166II	GTNNAC	1 cut(s)	820
Hpy188I	TCNGA	4 cut(s)	69, 198, 287, 769
Hpy188III	TCNNGA	6 cut(s)	33, 221, 274, 481, 806, 829
Hpy8I	GTNNAC	1 cut(s)	820
Hpy99I	CGWCG	1 cut(s)	541
HpyAV	CCTTC	4 cut(s)	150, 566, 774, 826
HpyCH4III	ACNGT	4 cut(s)	218, 325, 352, 703
HpyCH4V	TGCA	7 cut(s)	178, 251, 419, 662, 842, 909, 937
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	3 cut(s)	110, 456, 768
Hsp92II	CATG	1 cut(s)	832
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	4 cut(s)	120, 340, 583, 609
LguI	GCTCTTC	1 cut(s)	390
LpnPI	CCDG	7 cut(s)	102, 140, 220, 477, 528, 558, 936
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	2 cut(s)	165, 238
MaeI	CTAG	6 cut(s)	408, 569, 588, 716, 773, 777
MaeIII	GTNAC	3 cut(s)	208, 374, 970
MalI	GATC	4 cut(s)	122, 342, 585, 611
MboI	GATC	4 cut(s)	120, 340, 583, 609
MboII	GAAGA	8 cut(s)	48, 65, 71, 269, 289, 377, 607, 664
MflI	RGATCY	1 cut(s)	583
MhlI	GDGCHC	1 cut(s)	385
MlsI	TGGCCA	1 cut(s)	957
MluCI	AATT	3 cut(s)	294, 638, 888
MluNI	TGGCCA	1 cut(s)	957
MmeI	TCCRAC	2 cut(s)	561, 904
MnlI	CCTC	8 cut(s)	55, 162, 247, 488, 504, 802, 842, 935
Mox20I	TGGCCA	1 cut(s)	957
MroXI	GAANNNNTTC	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	957
MseI	TTAA	1 cut(s)	600
Msp20I	TGGCCA	1 cut(s)	957
Mva1269I	GAATGC	2 cut(s)	368, 490
MwoI	GCNNNNNNNGC	1 cut(s)	425
NdeI	CATATG	1 cut(s)	100
NdeII	GATC	4 cut(s)	120, 340, 583, 609
NheI	GCTAGC	1 cut(s)	772
NlaIII	CATG	1 cut(s)	832
NlaIV	GGNNCC	3 cut(s)	532, 585, 734
PagI	TCATGA	1 cut(s)	828
PciSI	GCTCTTC	1 cut(s)	390
PctI	GAATGC	2 cut(s)	368, 490
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	148, 422
PkrI	GCNGC	1 cut(s)	79
PpuMI	RGGWCCY	1 cut(s)	530
Psp124BI	GAGCTC	1 cut(s)	385
Psp5II	RGGWCCY	1 cut(s)	530
PspFI	CCCAGC	1 cut(s)	572
PspN4I	GGNNCC	3 cut(s)	532, 585, 734
PspPI	GGNCC	1 cut(s)	530
PspPPI	RGGWCCY	1 cut(s)	530
PsuI	RGATCY	1 cut(s)	583
RsaI	GTAC	2 cut(s)	645, 748
RsaNI	GTAC	2 cut(s)	644, 747
SacI	GAGCTC	1 cut(s)	385
SapI	GCTCTTC	1 cut(s)	390
SaqAI	TTAA	1 cut(s)	600
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	4 cut(s)	120, 340, 583, 609
Sau96I	GGNCC	1 cut(s)	530
SduI	GDGCHC	1 cut(s)	385
SfaNI	GCATC	2 cut(s)	165, 238
SinI	GGWCC	1 cut(s)	530
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	3 cut(s)	294, 638, 888
SspI	AATATT	1 cut(s)	801
SspMI	CTAG	6 cut(s)	408, 569, 588, 716, 773, 777
SstI	GAGCTC	1 cut(s)	385
StyI	CCWWGG	1 cut(s)	736
TaaI	ACNGT	4 cut(s)	218, 325, 352, 703
TaqI	TCGA	5 cut(s)	34, 154, 354, 509, 751
TasI	AATT	3 cut(s)	294, 638, 888
TfiI	GAWTC	2 cut(s)	148, 422
Tru1I	TTAA	1 cut(s)	600
Tru9I	TTAA	1 cut(s)	600
TscAI	CASTG	2 cut(s)	330, 496
TseI	GCWGC	1 cut(s)	77
TspDTI	ATGAA	5 cut(s)	217, 674, 771, 817, 845
TspRI	CASTG	2 cut(s)	330, 496
VpaK11BI	GGWCC	1 cut(s)	530
XapI	RAATTY	2 cut(s)	638, 888
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	6 cut(s)	408, 569, 588, 716, 773, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.