Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003940

Physical Location & Seq

Genomic Coordinates Forward (+)

58494162 .. 58524675

Gene Structure 30514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG372300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1722 bp

ATGGCGGCGGCAATGGCGGGAGAAGACTTAATGAGGCAGTCGAGTAGCCGGAGGAGCTGGCGGTCGACGAGTGTCCGAGAAATGTGGAACGCGCCGGACGTGTTCCAGCGGAGCGTCCGGCAGCCGGTGCTGGACGAGGAGGAGGAGCTCAAGTGGGCGGCCATAGAGCGGTTGCCGACTTATGATAGGATGAGGAGAGGCATGTTGAGGAATGTGATGAGCAATGGAAGGGTTGTGGCTGAAGAAGTTGACGTTGCGCATCTTGGGGATCAAGATAAGAAGCAGTTGATGGAGAGCATACTCAAGGTTATTGAGGAGGACAACGAGAAGTTCTTGAACAAGCTCAGGGCCAGAAATGACAGGGTTGGTATTGATATTCCTAAAGTTGAGGTTAGATTCCAGAATTTATCAATTGAGGGAGATGCGTTTGTAGGCACCAGAGCACTTCCGACTCTCTGGAATTCCACCTTGAACGCAGTAGAGGGAATACTGGGACTTGTTGGACTTTCACCATCGAAGAAAAGAGTTGTAAAGATACTACAAGATGTTAGTGGTATTATCAAACCAGCAAGGATGACACTTCTTCTTGGGCCTCCGGGATCAGGAAAAACAACATTGCTAAAAGCAGTTTCTGGCAAACTAGATAGGGATCTTAGGTTGCTGGCTTTCATTGGTATAAGTCAGATGGCACTCTCCCTCTTCCGTTTCATTGCAGCACTTGGAAGATCAGATGTGGTTGCTAACACAATTGGTTCATTTACACTTCTATTGCTTCCCCCTAACTCCTCCACTCAGCCTACTCTCGGAAAAGCCCTTCTCAGAGAAAGAGGCCTGTACACTGAAGAATATTGGTATTGGATTTGTGTTGGAGCGCTTTTTGGGTTTTCTTTTCTTTTCAATGGGCTGTTCATTGCAGCACTCACCTACTTGAACCCCCTTGGCGACAACAAAGGTCTAATTCTGGAGGATGATTCTGAAACCAAGAGGAGGCCACAATTGACAGAAGGTATTGATATGCAAGTGAGAACTGCAGAAGGAACTTCAAATGGACAAGCCAAGCGAGGAATGGTGTTGCCCTTCCAGCCCCTTTCACTCGCTTTCAGCCATGTGAACTACTATGTGGATATGCCTGCGAGTTCTCACTTATTTGATTTTTCAACAGAGAGAAACAACAAGATATTATTAACCTTCTGGGAGCAACCTATTCTGCCGTTCTTTTCCTTGGAGCGGGAAATGCTTCTGCCGTGCAATCTGTGGTTGCGATTGAGAGAACAGTTTTCTACCGAGAAAGAGCAGCAGGAATGTATTCAGAGTTGCCTTATGCATTTGCTCAGCATCACAGCTTCCCTGCTCCCCCATCTCTCTCCCTCATCACACCCGCACCGCCTCATCCTCGCTGCTCCCTCACCGCCGCATCCTCGAAGCTCCCCGTCACCTTCGCATTGTCGCTGCTCCCCATCACAGACGTATCAGCACGCAAGCATCTCTCTCCCTCACATCGTCGCTGCTCCCCGTCACCGCTCTCCATCTCCGTCCGTCATCATAGACCGCAGCCCCGACGTCGATATACCCATCTGTGTGTCCCTCGTCACATATCGATCTCCGACGCAAGCTCCCCGTCACCGGTCCTCGTCACCGCTCCCACAGATCGATCTCTCTCGGCATCGATCTACCCATCTCTCTGTCCCTCATCACAGGTTCGGTTCTTGTTGTGATAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

573

Amino Acids

64.29

Weight (kDa)

9.16

Isoelectric Point (pI)

67.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_trans_N	PF14510	106 - 154	5.9e-09	ABC-transporter N-terminal
PDR_assoc	PF08370	261 - 319	3.5e-26	Plant PDR ABC transporter associated

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003940)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29821 FvH4_c11g00010
malus_domestica	MD02G1041000.v1.1 MD08G1141000.v1.1
pyrus_communis	pycom05g17200 pycom14g01660
rosa_chinensis	RchiOBHm_Chr6g0286311
rosa_laevigata	RLG00000012581 RLG00000034948 RLG00000034949
rosa_multiflora	Rmu_co8063796.1_g000001 Rmu_co8130532.1_g000001 Rmu_co8356055.1_g000001 Rmu_co8362065.1_g000001 Rmu_co8518233.1_g000001 Rmu_sc0010154.1_g000003 Rmu_sc0024937.1_g000002 Rmu_sc0041504.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042760 Rroxscaffold_7G00169260 Rroxscaffold_7G00182440
rosa_samantha	Rh2CG374800 Rh5BG371500 Rh5BG371800 Rh5BG372200 Rh5BG372300 Rh5BG372500 Rh5CG394100 Rh5CG394300 Rh6CG295300 Rh6CG408800 Rh6DG395700 Rh6DG396100 Rh7DG199400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1563
Acc16I	TGCGCA	1 cut(s)	258
AccB1I	GGYRCC	1 cut(s)	434
AccBSI	CCGCTC	4 cut(s)	169, 1228, 1521, 1639
AccI	GTMKAC	1 cut(s)	65
AccII	CGCG	1 cut(s)	92
AclWI	GGATC	3 cut(s)	276, 607, 657
AcoI	YGGCCR	1 cut(s)	159
AcsI	RAATTY	2 cut(s)	403, 460
AcuI	CTGAAG	2 cut(s)	261, 861
AcyI	GRCGYC	1 cut(s)	1560
AfaI	GTAC	1 cut(s)	836
AfeI	AGCGCT	1 cut(s)	873
AfiI	CCNNNNNNNGG	7 cut(s)	124, 168, 602, 803, 987, 1227, 1623
AflIII	ACRYGT	1 cut(s)	99
AgeI	ACCGGT	1 cut(s)	1623
AgsI	TTSAA	6 cut(s)	337, 472, 898, 931, 1044, 1158
AjiI	CACGTC	1 cut(s)	100
AluBI	AGCT	6 cut(s)	57, 148, 343, 1343, 1425, 1613
AluI	AGCT	6 cut(s)	57, 148, 343, 1343, 1425, 1613
Alw21I	GWGCWC	2 cut(s)	150, 445
AlwI	GGATC	3 cut(s)	276, 607, 657
AlwNI	CAGNNNCTG	1 cut(s)	632
Aor51HI	AGCGCT	1 cut(s)	873
AoxI	GGCC	5 cut(s)	159, 348, 590, 829, 989
ApeKI	GCWGC	8 cut(s)	121, 713, 914, 1294, 1397, 1449, 1505, 1551
ApoI	RAATTY	2 cut(s)	403, 460
AsiGI	ACCGGT	1 cut(s)	1623
Asp700I	GAANNNNTTC	2 cut(s)	1236, 1305
AspLEI	GCGC	3 cut(s)	94, 259, 874
AspS9I	GGNCC	3 cut(s)	348, 590, 1626
AsuC2I	CCSGG	1 cut(s)	597
AsuHPI	GGTGA	7 cut(s)	501, 913, 1398, 1425, 1508, 1613, 1626
AvaII	GGWCC	1 cut(s)	1626
BaeI	ACNNNNGTAYC	2 cut(s)	1451, 1484
BanI	GGYRCC	1 cut(s)	434
BanII	GRGCYC	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	2 cut(s)	150, 445
BbvI	GCAGC	8 cut(s)	133, 725, 926, 1306, 1384, 1436, 1492, 1563
BccI	CCATC	8 cut(s)	283, 520, 679, 1365, 1465, 1534, 1580, 1683
BceAI	ACGGC	2 cut(s)	1195, 1228
BcnI	CCSGG	1 cut(s)	597
BfaI	CTAG	1 cut(s)	641
BfmI	CTRYAG	1 cut(s)	1029
BfoI	RGCGCY	1 cut(s)	875
BlpI	GCTNAGC	1 cut(s)	1331
Bme1390I	CCNGG	1 cut(s)	597
Bme18I	GGWCC	1 cut(s)	1626
BmgBI	CACGTC	1 cut(s)	100
BmgT120I	GGNCC	3 cut(s)	348, 590, 1626
BmiI	GGNNCC	1 cut(s)	436
BmrFI	CCNGG	1 cut(s)	597
BmrI	ACTGGG	1 cut(s)	500
BmsI	GCATC	6 cut(s)	268, 412, 1344, 1423, 1491, 1672
BmuI	ACTGGG	1 cut(s)	500
BoxI	GACNNNNGTC	1 cut(s)	71
BpiI	GAAGAC	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	983
Bpu10I	CCTNAGC	1 cut(s)	344
Bpu1102I	GCTNAGC	1 cut(s)	1331
BpuEI	CTTGAG	2 cut(s)	134, 287
BpuMI	CCSGG	1 cut(s)	597
Bsa29I	ATCGAT	3 cut(s)	1597, 1650, 1666
BsaBI	GATNNNNATC	1 cut(s)	648
BsaHI	GRCGYC	1 cut(s)	1560
BsaJI	CCNNGG	2 cut(s)	937, 1221
BsaWI	WCCGGW	1 cut(s)	1623
BsaXI	ACNNNNNCTCC	4 cut(s)	137, 167, 1597, 1627
Bsc4I	CCNNNNNNNGG	7 cut(s)	124, 168, 602, 803, 987, 1227, 1623
Bse118I	RCCGGY	2 cut(s)	124, 1623
Bse1I	ACTGG	1 cut(s)	495
Bse3DI	GCAATG	5 cut(s)	18, 229, 614, 708, 909
Bse8I	GATNNNNATC	1 cut(s)	648
BseCI	ATCGAT	3 cut(s)	1597, 1650, 1666
BseDI	CCNNGG	2 cut(s)	937, 1221
BseGI	GGATG	5 cut(s)	195, 579, 973, 1389, 1414
BseJI	GATNNNNATC	1 cut(s)	648
BseLI	CCNNNNNNNGG	7 cut(s)	124, 168, 602, 803, 987, 1227, 1623
BseMI	GCAATG	5 cut(s)	18, 229, 614, 708, 909
BseMII	CTCAG	4 cut(s)	358, 806, 832, 1345
BseNI	ACTGG	1 cut(s)	495
BseRI	GAGGAG	8 cut(s)	67, 152, 155, 158, 208, 329, 775, 1000
BseXI	GCAGC	8 cut(s)	133, 725, 926, 1306, 1384, 1436, 1492, 1563
Bsh1236I	CGCG	1 cut(s)	92
Bsh1285I	CGRYCG	1 cut(s)	65
BshFI	GGCC	5 cut(s)	161, 350, 592, 831, 991
BshNI	GGYRCC	1 cut(s)	434
BshTI	ACCGGT	1 cut(s)	1623
BshVI	ATCGAT	3 cut(s)	1597, 1650, 1666
BsiEI	CGRYCG	1 cut(s)	65
BsiHKAI	GWGCWC	2 cut(s)	150, 445
BsiSI	CCGG	6 cut(s)	49, 95, 118, 125, 596, 1624
BslFI	GGGAC	3 cut(s)	507, 1567, 1670
BslI	CCNNNNNNNGG	7 cut(s)	124, 168, 602, 803, 987, 1227, 1623
BsmFI	GGGAC	3 cut(s)	507, 1567, 1670
BsnI	GGCC	5 cut(s)	161, 350, 592, 831, 991
Bsp1286I	GDGCHC	2 cut(s)	150, 445
Bsp1407I	TGTACA	1 cut(s)	834
Bsp143I	GATC	8 cut(s)	268, 599, 649, 725, 1598, 1647, 1651, 1667
Bsp1720I	GCTNAGC	1 cut(s)	1331
BspANI	GGCC	5 cut(s)	161, 350, 592, 831, 991
BspCNI	CTCAG	4 cut(s)	357, 805, 831, 1344
BspDI	ATCGAT	3 cut(s)	1597, 1650, 1666
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	436
BspMAI	CTGCAG	1 cut(s)	1033
BspPI	GGATC	3 cut(s)	276, 607, 657
BspT107I	GGYRCC	1 cut(s)	434
BsrBI	CCGCTC	4 cut(s)	169, 1228, 1521, 1639
BsrDI	GCAATG	5 cut(s)	18, 229, 614, 708, 909
BsrFI	RCCGGY	2 cut(s)	124, 1623
BsrGI	TGTACA	1 cut(s)	834
BsrI	ACTGG	1 cut(s)	495
BssAI	RCCGGY	2 cut(s)	124, 1623
BssECI	CCNNGG	2 cut(s)	937, 1221
BssMI	GATC	8 cut(s)	268, 599, 649, 725, 1598, 1647, 1651, 1667
BssNI	GRCGYC	1 cut(s)	1560
BssT1I	CCWWGG	2 cut(s)	937, 1221
Bst4CI	ACNGT	1 cut(s)	1275
Bst6I	CTCTTC	1 cut(s)	704
BstACI	GRCGYC	1 cut(s)	1560
BstAPI	GCANNNNNTGC	1 cut(s)	127
BstAUI	TGTACA	1 cut(s)	834
BstC8I	GCNNGC	6 cut(s)	59, 663, 1131, 1476, 1480, 1611
BstDEI	CTNAG	5 cut(s)	344, 653, 792, 818, 1331
BstF5I	GGATG	5 cut(s)	195, 579, 973, 1389, 1414
BstFNI	CGCG	1 cut(s)	92
BstH2I	RGCGCY	1 cut(s)	875
BstHHI	GCGC	3 cut(s)	94, 259, 874
BstKTI	GATC	8 cut(s)	271, 602, 652, 728, 1601, 1650, 1654, 1670
BstMBI	GATC	8 cut(s)	268, 599, 649, 725, 1598, 1647, 1651, 1667
BstMCI	CGRYCG	1 cut(s)	65
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 54, 127, 1081, 1234
BstNSI	RCATGY	1 cut(s)	205
BstPAI	GACNNNNGTC	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	595
BstSFI	CTRYAG	1 cut(s)	1029
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	8 cut(s)	133, 725, 926, 1306, 1384, 1436, 1492, 1563
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	649
BstYI	RGATCY	1 cut(s)	649
Bsu15I	ATCGAT	3 cut(s)	1597, 1650, 1666
BsuRI	GGCC	5 cut(s)	161, 350, 592, 831, 991
BsuTUI	ATCGAT	3 cut(s)	1597, 1650, 1666
BtrI	CACGTC	1 cut(s)	100
BtsCI	GGATG	5 cut(s)	195, 579, 973, 1389, 1414
BtsIMutI	CAGTG	1 cut(s)	837
Cac8I	GCNNGC	6 cut(s)	59, 663, 1131, 1476, 1480, 1611
CaiI	CAGNNNCTG	1 cut(s)	632
CfoI	GCGC	3 cut(s)	94, 259, 874
Cfr10I	RCCGGY	2 cut(s)	124, 1623
Cfr13I	GGNCC	3 cut(s)	348, 590, 1626
ClaI	ATCGAT	3 cut(s)	1597, 1650, 1666
CseI	GACGC	2 cut(s)	103, 1615
Csp6I	GTAC	1 cut(s)	835
CspAI	ACCGGT	1 cut(s)	1623
CviAII	CATG	2 cut(s)	202, 1106
CviQI	GTAC	1 cut(s)	835
DdeI	CTNAG	5 cut(s)	344, 653, 792, 818, 1331
DpnI	GATC	8 cut(s)	270, 601, 651, 727, 1600, 1649, 1653, 1669
DpnII	GATC	8 cut(s)	268, 599, 649, 725, 1598, 1647, 1651, 1667
EaeI	YGGCCR	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	704
EarI	CTCTTC	1 cut(s)	704
Ecl136II	GAGCTC	1 cut(s)	148
Eco130I	CCWWGG	2 cut(s)	937, 1221
Eco147I	AGGCCT	1 cut(s)	831
Eco24I	GRGCYC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	1626
Eco47III	AGCGCT	1 cut(s)	873
Eco53kI	GAGCTC	1 cut(s)	148
Eco57I	CTGAAG	2 cut(s)	261, 861
EcoICRI	GAGCTC	1 cut(s)	148
EcoRI	GAATTC	1 cut(s)	460
EcoT14I	CCWWGG	2 cut(s)	937, 1221
EcoT22I	ATGCAT	1 cut(s)	1326
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	2 cut(s)	937, 1221
FaeI	CATG	2 cut(s)	205, 1109
FaqI	GGGAC	3 cut(s)	507, 1567, 1670
FatI	CATG	2 cut(s)	201, 1105
FauI	CCCGC	3 cut(s)	10, 1221, 1386
FblI	GTMKAC	1 cut(s)	65
FokI	GGATG	5 cut(s)	202, 586, 980, 1376, 1401
FriOI	GRGCYC	1 cut(s)	150
FspBI	CTAG	1 cut(s)	641
FspI	TGCGCA	1 cut(s)	258
GlaI	GCGC	3 cut(s)	93, 258, 873
GsuI	CTGGAG	1 cut(s)	983
HaeII	RGCGCY	1 cut(s)	875
HaeIII	GGCC	5 cut(s)	161, 350, 592, 831, 991
HapII	CCGG	6 cut(s)	49, 95, 118, 125, 596, 1624
HgaI	GACGC	2 cut(s)	103, 1615
HhaI	GCGC	3 cut(s)	94, 259, 874
Hin1I	GRCGYC	1 cut(s)	1560
Hin1II	CATG	2 cut(s)	205, 1109
Hin6I	GCGC	3 cut(s)	92, 257, 872
HinP1I	GCGC	3 cut(s)	92, 257, 872
HincII	GTYRAC	2 cut(s)	66, 250
HindII	GTYRAC	2 cut(s)	66, 250
HinfI	GANTC	3 cut(s)	396, 451, 971
HpaII	CCGG	6 cut(s)	49, 95, 118, 125, 596, 1624
HphI	GGTGA	7 cut(s)	501, 913, 1398, 1425, 1508, 1613, 1626
Hpy166II	GTNNAC	4 cut(s)	66, 250, 837, 1111
Hpy188I	TCNGA	9 cut(s)	77, 450, 684, 730, 806, 821, 976, 1311, 1605
Hpy188III	TCNNGA	6 cut(s)	272, 334, 400, 457, 603, 962
Hpy8I	GTNNAC	4 cut(s)	66, 250, 837, 1111
Hpy99I	CGWCG	5 cut(s)	70, 1505, 1562, 1565, 1609
HpyAV	CCTTC	7 cut(s)	222, 824, 998, 1028, 1087, 1198, 1446
HpyCH4III	ACNGT	1 cut(s)	1275
HpyCH4IV	ACGT	4 cut(s)	99, 252, 1466, 1560
HpyCH4V	TGCA	6 cut(s)	713, 914, 1018, 1031, 1248, 1324
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 54, 127, 1081, 1234
HpyF3I	CTNAG	5 cut(s)	344, 653, 792, 818, 1331
HpySE526I	ACGT	4 cut(s)	99, 252, 1466, 1560
Hsp92I	GRCGYC	1 cut(s)	1560
Hsp92II	CATG	2 cut(s)	205, 1109
HspAI	GCGC	3 cut(s)	92, 257, 872
Kzo9I	GATC	8 cut(s)	268, 599, 649, 725, 1598, 1647, 1651, 1667
Lsp1109I	GCAGC	8 cut(s)	133, 725, 926, 1306, 1384, 1436, 1492, 1563
LweI	GCATC	6 cut(s)	268, 412, 1344, 1423, 1491, 1672
MaeI	CTAG	1 cut(s)	641
MaeII	ACGT	4 cut(s)	99, 252, 1466, 1560
MaeIII	GTNAC	5 cut(s)	1431, 1514, 1588, 1619, 1632
MalI	GATC	8 cut(s)	270, 601, 651, 727, 1600, 1649, 1653, 1669
MbiI	CCGCTC	4 cut(s)	169, 1228, 1521, 1639
MboI	GATC	8 cut(s)	268, 599, 649, 725, 1598, 1647, 1651, 1667
MboII	GAAGA	7 cut(s)	35, 254, 529, 575, 691, 735, 854
MfeI	CAATTG	3 cut(s)	411, 747, 995
MflI	RGATCY	1 cut(s)	649
MhlI	GDGCHC	2 cut(s)	150, 445
MluCI	AATT	6 cut(s)	403, 411, 460, 747, 957, 995
MlyI	GAGTC	1 cut(s)	445
MmeI	TCCRAC	4 cut(s)	473, 481, 847, 1628
Mph1103I	ATGCAT	1 cut(s)	1326
MroXI	GAANNNNTTC	2 cut(s)	1236, 1305
MseI	TTAA	2 cut(s)	29, 1184
MslI	CAYNNNNRTG	1 cut(s)	1577
MspA1I	CMGCKG	1 cut(s)	109
MspI	CCGG	6 cut(s)	49, 95, 118, 125, 596, 1624
MspR9I	CCNGG	1 cut(s)	597
MunI	CAATTG	3 cut(s)	411, 747, 995
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	5 cut(s)	14, 54, 127, 1081, 1234
NciI	CCSGG	1 cut(s)	597
NdeII	GATC	8 cut(s)	268, 599, 649, 725, 1598, 1647, 1651, 1667
NlaIII	CATG	2 cut(s)	205, 1109
NlaIV	GGNNCC	1 cut(s)	436
NmeAIII	GCCGAG	1 cut(s)	1639
NmuCI	GTSAC	5 cut(s)	1431, 1514, 1588, 1619, 1632
NsbI	TGCGCA	1 cut(s)	258
NsiI	ATGCAT	1 cut(s)	1326
NspI	RCATGY	1 cut(s)	205
PceI	AGGCCT	1 cut(s)	831
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PdmI	GAANNNNTTC	2 cut(s)	1236, 1305
PfeI	GAWTC	2 cut(s)	396, 971
PfoI	TCCNGGA	1 cut(s)	595
PinAI	ACCGGT	1 cut(s)	1623
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
PshAI	GACNNNNGTC	1 cut(s)	71
Psp124BI	GAGCTC	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	436
PspPI	GGNCC	3 cut(s)	348, 590, 1626
PstI	CTGCAG	1 cut(s)	1033
PstNI	CAGNNNCTG	1 cut(s)	632
PsuI	RGATCY	1 cut(s)	649
RsaI	GTAC	1 cut(s)	836
RsaNI	GTAC	1 cut(s)	835
RseI	CAYNNNNRTG	1 cut(s)	1577
SacI	GAGCTC	1 cut(s)	150
SalI	GTCGAC	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	29, 1184
Sau3AI	GATC	8 cut(s)	268, 599, 649, 725, 1598, 1647, 1651, 1667
Sau96I	GGNCC	3 cut(s)	348, 590, 1626
SchI	GAGTC	1 cut(s)	445
ScrFI	CCNGG	1 cut(s)	597
SduI	GDGCHC	2 cut(s)	150, 445
SfaNI	GCATC	6 cut(s)	268, 412, 1344, 1423, 1491, 1672
SfcI	CTRYAG	1 cut(s)	1029
SinI	GGWCC	1 cut(s)	1626
SmiMI	CAYNNNNRTG	1 cut(s)	1577
SmlI	CTYRAG	2 cut(s)	149, 302
SmoI	CTYRAG	2 cut(s)	149, 302
Sse9I	AATT	6 cut(s)	403, 411, 460, 747, 957, 995
SseBI	AGGCCT	1 cut(s)	831
SspI	AATATT	1 cut(s)	848
SspMI	CTAG	1 cut(s)	641
SstI	GAGCTC	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	831
StyD4I	CCNGG	1 cut(s)	595
StyI	CCWWGG	2 cut(s)	937, 1221
TaaI	ACNGT	1 cut(s)	1275
TaiI	ACGT	4 cut(s)	102, 255, 1469, 1563
TaqI	TCGA	8 cut(s)	41, 65, 515, 1420, 1563, 1597, 1650, 1666
TasI	AATT	6 cut(s)	403, 411, 460, 747, 957, 995
TatI	WGTACW	1 cut(s)	834
TauI	GCSGC	4 cut(s)	8, 11, 161, 1414
TfiI	GAWTC	2 cut(s)	396, 971
Tru1I	TTAA	2 cut(s)	29, 1184
Tru9I	TTAA	2 cut(s)	29, 1184
TscAI	CASTG	1 cut(s)	844
TseFI	GTSAC	5 cut(s)	1431, 1514, 1588, 1619, 1632
TseI	GCWGC	8 cut(s)	121, 713, 914, 1294, 1397, 1449, 1505, 1551
Tsp45I	GTSAC	5 cut(s)	1431, 1514, 1588, 1619, 1632
TspDTI	ATGAA	4 cut(s)	658, 697, 744, 898
TspGWI	ACGGA	3 cut(s)	692, 1521, 1525
TspRI	CASTG	1 cut(s)	844
VpaK11BI	GGWCC	1 cut(s)	1626
XapI	RAATTY	2 cut(s)	403, 460
XceI	RCATGY	1 cut(s)	205
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1063
XmiI	GTMKAC	1 cut(s)	65
XmnI	GAANNNNTTC	2 cut(s)	1236, 1305
XspI	CTAG	1 cut(s)	641
ZraI	GACGTC	1 cut(s)	1561
Zsp2I	ATGCAT	1 cut(s)	1326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.