Rh6DG396100
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0003940
Physical Location & Seq
Forward (+)
58719622 .. 58720545
924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG396100.1

Sequence Viewer

Length: 618 bp
ATGGAAGTGTTTTCGAGGTCTTTTCGGGGTGAAGACGATGAAGAAGCTCTCAAATGGGCTGCAATTGAGAGGCTGCCTACTGGTTTGCGTATCGGGAGAGGCTTGTTCATTGATGGTGAGGGCCAAGCTAGGGAGGTTGGTGTCGAAAACCTTGGTTTACTTGAGAGGAAGACTTTGTTGGAGAGGCTGGTGAAAAATGCAGAGAAAGATAATGAGAAGTTCTTGTTAAAGCTCAAGAACCGAATTGACAGAGTTAAACTTCATATGCCCACAATTGAAGTTCGGTTTGAGCATCTGACTGTGGAGGCAAAAGTTTATTTGGGAAGCAGAGCACTGCCTACGTTACTCAACTTTGCCATCAATACGTTACAGGGATGGTTACATTATCTTCACATTTTTCCAAGTAGAAAGGCATCCTTAACAATCCTTCAAAATGTTAGTGGCATTATCAAGCCCCAAAGAATGACTTTGCTTTTAGGTCCCCCAAGTTCCGGAAAAACCACATTACTATTGGCTCTTGCAGGAAGACTTGGTAAAGATTTAAGAGTAAGAACAAAACTTTGGCCCTTTTATGTCATGAATTTTCTTCACTTCATAAAATCTGGTCTAATAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

205

Amino Acids

23.33

Weight (kDa)

10.08

Isoelectric Point (pI)

34.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 67 - 118 9.8e-09 ABC-transporter N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 491
AcsI RAATTY 1 cut(s) 580
AfiI CCNNNNNNNGG 2 cut(s) 130, 491
AgsI TTSAA 2 cut(s) 278, 431
AjuI GAANNNNNNNTTGG 4 cut(s) 161, 193, 544, 576
AluBI AGCT 3 cut(s) 47, 128, 232
AluI AGCT 3 cut(s) 47, 128, 232
Alw21I GWGCWC 1 cut(s) 334
Aor13HI TCCGGA 1 cut(s) 491
AoxI GGCC 2 cut(s) 121, 563
ApeKI GCWGC 2 cut(s) 59, 73
ApoI RAATTY 1 cut(s) 580
AspS9I GGNCC 3 cut(s) 121, 479, 564
AsuHPI GGTGA 3 cut(s) 41, 128, 202
AvaII GGWCC 1 cut(s) 479
BbsI GAAGAC 3 cut(s) 39, 176, 532
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 2 cut(s) 46, 60
BccI CCATC 3 cut(s) 107, 365, 369
BfaI CTAG 1 cut(s) 129
BisI GCNGC 2 cut(s) 60, 74
BlsI GCNGC 2 cut(s) 61, 75
Bme18I GGWCC 1 cut(s) 479
BmgT120I GGNCC 3 cut(s) 121, 479, 564
BmiI GGNNCC 1 cut(s) 481
BmsI GCATC 2 cut(s) 301, 422
BpiI GAAGAC 3 cut(s) 39, 176, 532
BpuEI CTTGAG 2 cut(s) 182, 218
BsaJI CCNNGG 1 cut(s) 151
BsaWI WCCGGW 1 cut(s) 491
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 491
Bse1I ACTGG 1 cut(s) 85
BseAI TCCGGA 1 cut(s) 491
BseDI CCNNGG 1 cut(s) 151
BseGI GGATG 2 cut(s) 380, 413
BseLI CCNNNNNNNGG 2 cut(s) 130, 491
BseNI ACTGG 1 cut(s) 85
BseXI GCAGC 2 cut(s) 46, 60
BshFI GGCC 2 cut(s) 123, 565
BsiHKAI GWGCWC 1 cut(s) 334
BsiSI CCGG 1 cut(s) 492
BslFI GGGAC 1 cut(s) 465
BslI CCNNNNNNNGG 2 cut(s) 130, 491
BsmFI GGGAC 1 cut(s) 465
BsnI GGCC 2 cut(s) 123, 565
Bsp1286I GDGCHC 1 cut(s) 334
Bsp13I TCCGGA 1 cut(s) 491
BspANI GGCC 2 cut(s) 123, 565
BspEI TCCGGA 1 cut(s) 491
BspHI TCATGA 1 cut(s) 576
BspLI GGNNCC 1 cut(s) 481
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 1 cut(s) 151
BssT1I CCWWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 301
BstF5I GGATG 2 cut(s) 380, 413
BstV1I GCAGC 2 cut(s) 46, 60
BstV2I GAAGAC 3 cut(s) 39, 176, 532
BsuRI GGCC 2 cut(s) 123, 565
BtsCI GGATG 2 cut(s) 380, 413
BtsI GCAGTG 1 cut(s) 332
BtsIMutI CAGTG 1 cut(s) 332
CciI TCATGA 1 cut(s) 576
Cfr13I GGNCC 3 cut(s) 121, 479, 564
CviAII CATG 1 cut(s) 577
Eco130I CCWWGG 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 479
EcoO109I RGGNCCY 1 cut(s) 479
EcoT14I CCWWGG 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 151
FaeI CATG 1 cut(s) 580
FaiI YATR 5 cut(s) 264, 266, 573, 578, 596
FalI AAGNNNNNCTT 4 cut(s) 401, 433, 451, 483
FaqI GGGAC 1 cut(s) 465
FatI CATG 1 cut(s) 576
FauNDI CATATG 1 cut(s) 264
Fnu4HI GCNGC 2 cut(s) 60, 74
FokI GGATG 2 cut(s) 387, 400
Fsp4HI GCNGC 2 cut(s) 60, 74
FspBI CTAG 1 cut(s) 129
GluI GCNGC 2 cut(s) 60, 74
HaeIII GGCC 2 cut(s) 123, 565
HapII CCGG 1 cut(s) 492
Hin1II CATG 1 cut(s) 580
HpaII CCGG 1 cut(s) 492
HphI GGTGA 3 cut(s) 41, 128, 202
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 1 cut(s) 297
Hpy188III TCNNGA 4 cut(s) 94, 235, 492, 577
Hpy8I GTNNAC 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 437
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4IV ACGT 2 cut(s) 341, 365
HpyCH4V TGCA 3 cut(s) 62, 200, 521
HpySE526I ACGT 2 cut(s) 341, 365
Hsp92II CATG 1 cut(s) 580
Kpn2I TCCGGA 1 cut(s) 491
LpnPI CCDG 6 cut(s) 66, 173, 356, 505, 507, 588
Lsp1109I GCAGC 2 cut(s) 46, 60
LweI GCATC 2 cut(s) 301, 422
MaeI CTAG 1 cut(s) 129
MaeII ACGT 2 cut(s) 341, 365
MaeIII GTNAC 3 cut(s) 342, 366, 378
MboII GAAGA 6 cut(s) 44, 53, 181, 380, 537, 578
MfeI CAATTG 2 cut(s) 63, 273
MhlI GDGCHC 1 cut(s) 334
MluCI AATT 4 cut(s) 63, 243, 273, 580
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 8 cut(s) 9, 63, 92, 112, 127, 159, 177, 298
MroI TCCGGA 1 cut(s) 491
MseI TTAA 4 cut(s) 227, 255, 419, 542
MspI CCGG 1 cut(s) 492
MunI CAATTG 2 cut(s) 63, 273
NdeI CATATG 1 cut(s) 264
NlaIII CATG 1 cut(s) 580
NlaIV GGNNCC 1 cut(s) 481
PagI TCATGA 1 cut(s) 576
PkrI GCNGC 2 cut(s) 61, 75
PpuMI RGGWCCY 1 cut(s) 479
Psp5II RGGWCCY 1 cut(s) 479
PspN4I GGNNCC 1 cut(s) 481
PspPI GGNCC 3 cut(s) 121, 479, 564
PspPPI RGGWCCY 1 cut(s) 479
SaqAI TTAA 4 cut(s) 227, 255, 419, 542
SatI GCNGC 2 cut(s) 60, 74
Sau96I GGNCC 3 cut(s) 121, 479, 564
SduI GDGCHC 1 cut(s) 334
SetI ASST 9 cut(s) 20, 49, 130, 138, 153, 234, 344, 368, 481
SfaNI GCATC 2 cut(s) 301, 422
SinI GGWCC 1 cut(s) 479
SmlI CTYRAG 2 cut(s) 161, 233
SmoI CTYRAG 2 cut(s) 161, 233
Sse9I AATT 4 cut(s) 63, 243, 273, 580
SspMI CTAG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 301
TaiI ACGT 2 cut(s) 344, 368
TaqI TCGA 2 cut(s) 14, 144
TasI AATT 4 cut(s) 63, 243, 273, 580
Tru1I TTAA 4 cut(s) 227, 255, 419, 542
Tru9I TTAA 4 cut(s) 227, 255, 419, 542
TscAI CASTG 1 cut(s) 339
TseI GCWGC 2 cut(s) 59, 73
TspDTI ATGAA 5 cut(s) 54, 97, 251, 583, 593
TspRI CASTG 1 cut(s) 339
VpaK11BI GGWCC 1 cut(s) 479
XapI RAATTY 1 cut(s) 580
XcmI CCANNNNNNNNNTGG 1 cut(s) 508
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.