Rh6CG295300
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003940
Physical Location & Seq
Forward (+)
47437345 .. 47454569
17225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG295300.1

Sequence Viewer

Length: 669 bp
ATGGTTGTCGTTCGGGTCGGCGAAGTGGGTATCTTGCAGGGTATCGAATTCGATGGCGATAAATTTGTTTTGGGTCAATTGGGAGGAGTTGAAGAGACCCTGATAGCTGCCAGAGCTGCCGAGGGTTTGGTTGTTGGGGGAGAGGAAAAACGACATGCCATCGCCGGAGGAGGAGGGGTTAAGATCTTCATCTGTGACCTTGAAAAAGCCCGTCATAGTTTCAACAGAAGGGGTTCGTTTTGGAATGACGATGGCAGGGCGCGCGCGGTTTTCTCAGCATCTTCTGCTAGAGAGGACGATGAGGAAGCTCTTAAATGGGCAGCTCTGCATAGACTTCCTACCTTCACTCGTTTGAAAAAAGGGTTGCTCACTACTCCACAAGGCCATGCCAACGAAGTCGATGTGCATCACCTTGAGCTCCAAGAAAAGAAAGACTTGATCGAGAGGCTAGTGGGAGTTGCTGAGGAGGATCATGAGAAATTTTTGTTGAGGCTCAAGAGCCGAATCGATAGAGTTGGAATTAGTCTTCCTACAATTGAAGTTACGTTCGAGCATCTGAAAATTGCGGCTGAAACTCATGTTGGAGGCAGGGCTCTGCCTTCTGTCTTCAATTGTTGTGTTAATGTATTGGAGGTACTAATAGACTACCACATTTCAAGTTTTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

222

Amino Acids

24.42

Weight (kDa)

5.94

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 155 - 204 2.7e-06 ABC-transporter N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 262, 264, 266
AciI CCGC 2 cut(s) 266, 566
AclWI GGATC 1 cut(s) 477
AcsI RAATTY 3 cut(s) 47, 62, 479
AfaI GTAC 1 cut(s) 636
AgsI TTSAA 7 cut(s) 92, 203, 223, 355, 539, 610, 657
AjuI GAANNNNNNNTTGG 2 cut(s) 564, 596
AluBI AGCT 5 cut(s) 107, 116, 308, 323, 418
AluI AGCT 5 cut(s) 107, 116, 308, 323, 418
Alw21I GWGCWC 1 cut(s) 420
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 1 cut(s) 477
AoxI GGCC 1 cut(s) 382
ApeKI GCWGC 3 cut(s) 107, 116, 320
ApoI RAATTY 3 cut(s) 47, 62, 479
Asp700I GAANNNNTTC 1 cut(s) 232
AspLEI GCGC 3 cut(s) 262, 264, 266
AsuHPI GGTGA 1 cut(s) 401
BanII GRGCYC 2 cut(s) 420, 595
BbsI GAAGAC 2 cut(s) 518, 598
Bbv12I GWGCWC 1 cut(s) 420
BbvCI CCTCAGC 1 cut(s) 462
BbvI GCAGC 3 cut(s) 94, 103, 332
BccI CCATC 3 cut(s) 47, 167, 245
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 2 cut(s) 288, 449
BglII AGATCT 1 cut(s) 183
BisI GCNGC 4 cut(s) 108, 117, 321, 567
BlsI GCNGC 4 cut(s) 109, 118, 322, 568
BmsI GCATC 3 cut(s) 287, 415, 562
BpiI GAAGAC 2 cut(s) 518, 598
Bpu10I CCTNAGC 1 cut(s) 462
BpuEI CTTGAG 2 cut(s) 434, 479
Bsa29I ATCGAT 1 cut(s) 507
BsaBI GATNNNNATC 2 cut(s) 188, 405
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 120
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bse8I GATNNNNATC 2 cut(s) 188, 405
BseCI ATCGAT 1 cut(s) 507
BseDI CCNNGG 1 cut(s) 120
BseJI GATNNNNATC 2 cut(s) 188, 405
BseMII CTCAG 2 cut(s) 288, 453
BsePI GCGCGC 2 cut(s) 260, 262
BseRI GAGGAG 4 cut(s) 99, 183, 186, 479
BseXI GCAGC 3 cut(s) 94, 103, 332
Bsh1236I CGCG 3 cut(s) 262, 264, 266
BshFI GGCC 1 cut(s) 384
BshVI ATCGAT 1 cut(s) 507
BsiHKAI GWGCWC 1 cut(s) 420
BsiSI CCGG 1 cut(s) 165
BsmAI GTCTC 1 cut(s) 89
BsnI GGCC 1 cut(s) 384
Bso31I GGTCTC 1 cut(s) 89
Bsp1286I GDGCHC 2 cut(s) 420, 595
Bsp143I GATC 3 cut(s) 183, 438, 469
BspACI CCGC 2 cut(s) 266, 566
BspANI GGCC 1 cut(s) 384
BspCNI CTCAG 2 cut(s) 287, 454
BspDI ATCGAT 1 cut(s) 507
BspFNI CGCG 3 cut(s) 262, 264, 266
BspHI TCATGA 1 cut(s) 472
BspPI GGATC 1 cut(s) 477
BspTNI GGTCTC 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 120
BssHII GCGCGC 2 cut(s) 260, 262
BssMI GATC 3 cut(s) 183, 438, 469
Bst6I CTCTTC 1 cut(s) 87
BstAPI GCANNNNNTGC 1 cut(s) 284
BstC8I GCNNGC 2 cut(s) 262, 264
BstDEI CTNAG 2 cut(s) 274, 462
BstFNI CGCG 3 cut(s) 262, 264, 266
BstHHI GCGC 3 cut(s) 262, 264, 266
BstKTI GATC 3 cut(s) 186, 441, 472
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 3 cut(s) 183, 438, 469
BstMWI GCNNNNNNNGC 4 cut(s) 113, 116, 261, 284
BstNSI RCATGY 1 cut(s) 158
BstUI CGCG 3 cut(s) 262, 264, 266
BstV1I GCAGC 3 cut(s) 94, 103, 332
BstV2I GAAGAC 2 cut(s) 518, 598
BstX2I RGATCY 1 cut(s) 183
BstYI RGATCY 1 cut(s) 183
Bsu15I ATCGAT 1 cut(s) 507
BsuRI GGCC 1 cut(s) 384
BsuTUI ATCGAT 1 cut(s) 507
BtgZI GCGATG 1 cut(s) 145
Cac8I GCNNGC 2 cut(s) 262, 264
CciI TCATGA 1 cut(s) 472
CfoI GCGC 3 cut(s) 262, 264, 266
ClaI ATCGAT 1 cut(s) 507
Csp6I GTAC 1 cut(s) 635
CviAII CATG 4 cut(s) 155, 386, 473, 578
CviQI GTAC 1 cut(s) 635
DdeI CTNAG 2 cut(s) 274, 462
DpnI GATC 3 cut(s) 185, 440, 471
DpnII GATC 3 cut(s) 183, 438, 469
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Ecl136II GAGCTC 1 cut(s) 418
Eco24I GRGCYC 2 cut(s) 420, 595
Eco31I GGTCTC 1 cut(s) 89
Eco53kI GAGCTC 1 cut(s) 418
EcoICRI GAGCTC 1 cut(s) 418
EcoRI GAATTC 1 cut(s) 47
EcoT38I GRGCYC 2 cut(s) 420, 595
FaeI CATG 4 cut(s) 158, 389, 476, 581
FaiI YATR 6 cut(s) 156, 216, 330, 387, 474, 579
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FatI CATG 4 cut(s) 154, 385, 472, 577
Fnu4HI GCNGC 4 cut(s) 108, 117, 321, 567
FriOI GRGCYC 2 cut(s) 420, 595
Fsp4HI GCNGC 4 cut(s) 108, 117, 321, 567
FspBI CTAG 2 cut(s) 288, 449
GlaI GCGC 3 cut(s) 261, 263, 265
GluI GCNGC 4 cut(s) 108, 117, 321, 567
HaeIII GGCC 1 cut(s) 384
HapII CCGG 1 cut(s) 165
HhaI GCGC 3 cut(s) 262, 264, 266
Hin1II CATG 4 cut(s) 158, 389, 476, 581
Hin6I GCGC 3 cut(s) 260, 262, 264
HinP1I GCGC 3 cut(s) 260, 262, 264
HinfI GANTC 1 cut(s) 504
HpaII CCGG 1 cut(s) 165
HphI GGTGA 1 cut(s) 401
Hpy188I TCNGA 1 cut(s) 558
Hpy188III TCNNGA 3 cut(s) 442, 473, 496
HpyAV CCTTC 3 cut(s) 222, 352, 609
HpyCH4IV ACGT 1 cut(s) 545
HpyCH4V TGCA 3 cut(s) 37, 328, 406
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 116, 261, 284
HpyF3I CTNAG 2 cut(s) 274, 462
HpySE526I ACGT 1 cut(s) 545
Hsp92II CATG 4 cut(s) 158, 389, 476, 581
HspAI GCGC 3 cut(s) 260, 262, 264
Kzo9I GATC 3 cut(s) 183, 438, 469
LmnI GCTCC 1 cut(s) 423
LpnPI CCDG 6 cut(s) 23, 113, 124, 178, 241, 574
Lsp1109I GCAGC 3 cut(s) 94, 103, 332
LweI GCATC 3 cut(s) 287, 415, 562
MaeI CTAG 2 cut(s) 288, 449
MaeII ACGT 1 cut(s) 545
MaeIII GTNAC 2 cut(s) 194, 541
MalI GATC 3 cut(s) 185, 440, 471
MauBI CGCGCGCG 1 cut(s) 262
MboI GATC 3 cut(s) 183, 438, 469
MboII GAAGA 5 cut(s) 104, 178, 273, 518, 598
MfeI CAATTG 3 cut(s) 77, 534, 610
MflI RGATCY 1 cut(s) 183
MhlI GDGCHC 2 cut(s) 420, 595
MluCI AATT 8 cut(s) 47, 62, 77, 479, 519, 534, 561, 610
MmeI TCCRAC 2 cut(s) 496, 562
MroXI GAANNNNTTC 1 cut(s) 232
MseI TTAA 3 cut(s) 180, 312, 621
MspI CCGG 1 cut(s) 165
MunI CAATTG 3 cut(s) 77, 534, 610
MvnI CGCG 3 cut(s) 262, 264, 266
MwoI GCNNNNNNNGC 4 cut(s) 113, 116, 261, 284
NdeII GATC 3 cut(s) 183, 438, 469
NlaIII CATG 4 cut(s) 158, 389, 476, 581
NmeAIII GCCGAG 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 194
NspI RCATGY 1 cut(s) 158
PagI TCATGA 1 cut(s) 472
PauI GCGCGC 2 cut(s) 260, 262
PdmI GAANNNNTTC 1 cut(s) 232
PfeI GAWTC 1 cut(s) 504
PkrI GCNGC 4 cut(s) 109, 118, 322, 568
Psp124BI GAGCTC 1 cut(s) 420
PsuI RGATCY 1 cut(s) 183
PteI GCGCGC 2 cut(s) 260, 262
RsaI GTAC 1 cut(s) 636
RsaNI GTAC 1 cut(s) 635
SacI GAGCTC 1 cut(s) 420
SaqAI TTAA 3 cut(s) 180, 312, 621
SatI GCNGC 4 cut(s) 108, 117, 321, 567
Sau3AI GATC 3 cut(s) 183, 438, 469
SduI GDGCHC 2 cut(s) 420, 595
SfaNI GCATC 3 cut(s) 287, 415, 562
SmlI CTYRAG 2 cut(s) 413, 494
SmoI CTYRAG 2 cut(s) 413, 494
Sse9I AATT 8 cut(s) 47, 62, 77, 479, 519, 534, 561, 610
SsiI CCGC 2 cut(s) 266, 566
SspMI CTAG 2 cut(s) 288, 449
SstI GAGCTC 1 cut(s) 420
TaiI ACGT 1 cut(s) 548
TaqI TCGA 6 cut(s) 45, 51, 399, 441, 507, 549
TasI AATT 8 cut(s) 47, 62, 77, 479, 519, 534, 561, 610
TauI GCSGC 1 cut(s) 569
TfiI GAWTC 1 cut(s) 504
Tru1I TTAA 3 cut(s) 180, 312, 621
Tru9I TTAA 3 cut(s) 180, 312, 621
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 3 cut(s) 107, 116, 320
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 1 cut(s) 178
XapI RAATTY 3 cut(s) 47, 62, 479
XceI RCATGY 1 cut(s) 158
XmnI GAANNNNTTC 1 cut(s) 232
XspI CTAG 2 cut(s) 288, 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.