RLG00000034948

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003940
Physical Location & Seq
Reverse (-)
57498453 .. 57499219
767 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034948

Sequence Viewer

Length: 531 bp
ATGGTTGACAACTGTATCAGGATTCTCCCTCTTGAAGGCCCAGACATGCCAACTTATAGGACGCAAGTTCGAGAACTGCCCGCATTACTTGGATTGAGTCGAGATCAAGAACTGAGTTTGTCAGCTCGCACTTATATGGAGCTATGTCACTTCCGAGACATGTTTGACTATGACTCCCCCATATTCGAGTCCATTGACATCGAGCAGATTATCCAAAGAGGCAAGGATGTGATAGCTCTTGATGACATTCAAAAGGTCATACCTGGTGTTACTGAGCAGTGTATTCAGGAGATGTGCGCTGGTTTTAAGAGGCTTTTTGATGACCCAAGTTTTCCACGCTATTTCAACACCGTGGTCGGGGCACTTGATTTCTCCAGAAATGCATACAACCACATGAATCAACATATGCCTCGGGAAGACAACGGACGAATGACGCCGAAGCAATTGGATGGGATGCTCAGTTTCTTTTTCCCATGGCAATGGCTGGAGCTTTATCGTCTTCTAGTCGATCATGGAATCAACTTAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

20.63

Weight (kDa)

4.8

Isoelectric Point (pI)

35.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 434
AfiI CCNNNNNNNGG 2 cut(s) 35, 357
AflIII ACRYGT 1 cut(s) 159
AgsI TTSAA 3 cut(s) 35, 251, 346
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 4 cut(s) 125, 142, 236, 490
AluI AGCT 4 cut(s) 125, 142, 236, 490
Alw26I GTCTC 1 cut(s) 150
Ama87I CYCGRG 1 cut(s) 411
AoxI GGCC 1 cut(s) 37
AspLEI GCGC 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 38
AvaI CYCGRG 1 cut(s) 411
BaeGI GKGCMC 1 cut(s) 364
BaeI ACNNNNGTAYC 1 cut(s) 31
BbsI GAAGAC 2 cut(s) 423, 491
BccI CCATC 1 cut(s) 443
BciT130I CCWGG 1 cut(s) 264
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 1 cut(s) 503
Bme1390I CCNGG 1 cut(s) 264
BmeT110I CYCGRG 1 cut(s) 411
BmgT120I GGNCC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 1 cut(s) 444
BpiI GAAGAC 2 cut(s) 423, 491
BpmI CTGGAG 2 cut(s) 358, 506
BsaHI GRCGYC 1 cut(s) 434
BsaJI CCNNGG 3 cut(s) 351, 410, 473
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 357
Bse3DI GCAATG 1 cut(s) 485
BseBI CCWGG 1 cut(s) 264
BseDI CCNNGG 3 cut(s) 351, 410, 473
BseGI GGATG 3 cut(s) 232, 454, 459
BseLI CCNNNNNNNGG 2 cut(s) 35, 357
BseMI GCAATG 1 cut(s) 485
BseMII CTCAG 3 cut(s) 104, 264, 472
BseSI GKGCMC 1 cut(s) 364
BshFI GGCC 1 cut(s) 39
BsiHKCI CYCGRG 1 cut(s) 411
BslI CCNNNNNNNGG 2 cut(s) 35, 357
BsmAI GTCTC 1 cut(s) 150
BsnI GGCC 1 cut(s) 39
BsoBI CYCGRG 1 cut(s) 411
Bsp1286I GDGCHC 1 cut(s) 364
Bsp143I GATC 2 cut(s) 103, 508
Bsp19I CCATGG 1 cut(s) 473
BspACI CCGC 1 cut(s) 81
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 3 cut(s) 105, 265, 471
BsrDI GCAATG 1 cut(s) 485
BssECI CCNNGG 3 cut(s) 351, 410, 473
BssMI GATC 2 cut(s) 103, 508
BssNI GRCGYC 1 cut(s) 434
BssT1I CCWWGG 1 cut(s) 473
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 2 cut(s) 14, 352
BstACI GRCGYC 1 cut(s) 434
BstC8I GCNNGC 2 cut(s) 81, 127
BstDEI CTNAG 4 cut(s) 113, 273, 458, 523
BstDSI CCRYGG 2 cut(s) 351, 473
BstENI CCTNNNNNAGG 1 cut(s) 33
BstF5I GGATG 3 cut(s) 232, 454, 459
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 2 cut(s) 106, 511
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 2 cut(s) 103, 508
BstNI CCWGG 1 cut(s) 264
BstNSI RCATGY 2 cut(s) 49, 163
BstSCI CCNGG 1 cut(s) 262
BstSLI GKGCMC 1 cut(s) 364
BstV2I GAAGAC 2 cut(s) 423, 491
BstXI CCANNNNNNTGG 1 cut(s) 480
BsuRI GGCC 1 cut(s) 39
BtgI CCRYGG 2 cut(s) 351, 473
BtsCI GGATG 3 cut(s) 232, 454, 459
BtsI GCAGTG 1 cut(s) 284
BtsIMutI CAGTG 1 cut(s) 284
Cac8I GCNNGC 2 cut(s) 81, 127
CfoI GCGC 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 38
CseI GACGC 2 cut(s) 70, 442
CsiI ACCWGGT 1 cut(s) 262
CviAII CATG 5 cut(s) 46, 160, 394, 474, 512
CviJI RGCY 7 cut(s) 39, 125, 142, 236, 313, 484, 490
CviKI_1 RGCY 7 cut(s) 39, 125, 142, 236, 313, 484, 490
DdeI CTNAG 4 cut(s) 113, 273, 458, 523
DpnI GATC 2 cut(s) 105, 510
DpnII GATC 2 cut(s) 103, 508
Eco130I CCWWGG 1 cut(s) 473
Eco88I CYCGRG 1 cut(s) 411
EcoNI CCTNNNNNAGG 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 473
EcoT22I ATGCAT 1 cut(s) 385
ErhI CCWWGG 1 cut(s) 473
FaeI CATG 5 cut(s) 49, 163, 397, 477, 515
FatI CATG 5 cut(s) 45, 159, 393, 473, 511
FauI CCCGC 1 cut(s) 88
FauNDI CATATG 1 cut(s) 405
FokI GGATG 3 cut(s) 239, 461, 466
FspBI CTAG 1 cut(s) 503
GlaI GCGC 1 cut(s) 298
GsuI CTGGAG 2 cut(s) 358, 506
HaeIII GGCC 1 cut(s) 39
HgaI GACGC 2 cut(s) 70, 442
HhaI GCGC 1 cut(s) 299
Hin1I GRCGYC 1 cut(s) 434
Hin1II CATG 5 cut(s) 49, 163, 397, 477, 515
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HinfI GANTC 6 cut(s) 22, 97, 173, 188, 397, 516
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 9 cut(s) 19, 32, 71, 101, 107, 239, 287, 375, 413
Hpy8I GTNNAC 1 cut(s) 7
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 2 cut(s) 14, 352
HpyCH4V TGCA 1 cut(s) 383
HpyF3I CTNAG 4 cut(s) 113, 273, 458, 523
Hsp92I GRCGYC 1 cut(s) 434
Hsp92II CATG 5 cut(s) 49, 163, 397, 477, 515
HspAI GCGC 1 cut(s) 297
Kzo9I GATC 2 cut(s) 103, 508
LmnI GCTCC 2 cut(s) 139, 487
LpnPI CCDG 8 cut(s) 4, 54, 249, 272, 276, 285, 388, 470
LweI GCATC 1 cut(s) 444
MabI ACCWGGT 1 cut(s) 262
MaeI CTAG 1 cut(s) 503
MaeIII GTNAC 2 cut(s) 146, 268
MalI GATC 2 cut(s) 105, 510
MboI GATC 2 cut(s) 103, 508
MboII GAAGA 2 cut(s) 428, 491
MfeI CAATTG 1 cut(s) 443
MhlI GDGCHC 1 cut(s) 364
MluCI AATT 1 cut(s) 443
MlyI GAGTC 3 cut(s) 106, 167, 197
MnlI CCTC 4 cut(s) 39, 212, 303, 420
Mph1103I ATGCAT 1 cut(s) 385
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 2 cut(s) 134, 478
MspR9I CCNGG 1 cut(s) 264
MunI CAATTG 1 cut(s) 443
MvaI CCWGG 1 cut(s) 264
NcoI CCATGG 1 cut(s) 473
NdeI CATATG 1 cut(s) 405
NdeII GATC 2 cut(s) 103, 508
NlaIII CATG 5 cut(s) 49, 163, 397, 477, 515
NmuCI GTSAC 1 cut(s) 146
NsiI ATGCAT 1 cut(s) 385
NspI RCATGY 2 cut(s) 49, 163
PciI ACATGT 1 cut(s) 159
PfeI GAWTC 3 cut(s) 22, 397, 516
PleI GAGTC 3 cut(s) 105, 167, 196
PpsI GAGTC 3 cut(s) 105, 167, 196
PscI ACATGT 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspPI GGNCC 1 cut(s) 38
RseI CAYNNNNRTG 2 cut(s) 134, 478
SaqAI TTAA 1 cut(s) 306
Sau3AI GATC 2 cut(s) 103, 508
Sau96I GGNCC 1 cut(s) 38
SchI GAGTC 3 cut(s) 106, 167, 197
ScrFI CCNGG 1 cut(s) 264
SduI GDGCHC 1 cut(s) 364
SetI ASST 6 cut(s) 127, 144, 238, 258, 265, 492
SexAI ACCWGGT 1 cut(s) 262
SfaNI GCATC 1 cut(s) 444
SmiMI CAYNNNNRTG 2 cut(s) 134, 478
Sse9I AATT 1 cut(s) 443
SsiI CCGC 1 cut(s) 81
SspMI CTAG 1 cut(s) 503
StyD4I CCNGG 1 cut(s) 262
StyI CCWWGG 1 cut(s) 473
TaaI ACNGT 2 cut(s) 14, 352
TaqI TCGA 5 cut(s) 70, 100, 186, 201, 507
TasI AATT 1 cut(s) 443
TfiI GAWTC 3 cut(s) 22, 397, 516
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 1 cut(s) 284
TseFI GTSAC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 410
TspGWI ACGGA 1 cut(s) 438
TspRI CASTG 1 cut(s) 284
XagI CCTNNNNNAGG 1 cut(s) 33
XceI RCATGY 2 cut(s) 49, 163
XspI CTAG 1 cut(s) 503
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.