Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003940

Physical Location & Seq

Genomic Coordinates Forward (+)

51936562 .. 51943266

Gene Structure 6705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG394100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2709 bp

ATGGCGGCGGCATTGGCCGGAGAAGACTTAATGAGGCAGTCGAGCAGCAGAAGCAGCCGGAGCAGCTGGCGGTCGTCGAGTGTCCGGGAAATGTGGAACGCGCCGGACGTGTTCCAGCGGAGCGGGCGGCAGCAGACGGTGGATGAGGAGGAGGAGCTCAAGTGGGCCGCCATCGAGCGGTTGCCGACTTATGATAGGATGAGGAGAGGCATGTTGCGGAATGTTATGAGCAATGGGAGGGTTGTAAATGAAGAAGTTGATGTTGCGAATCTTGGGGATCAAGATAAGAGGCAGTTGATGGAGAGCATACTCAAGGTTGTTGAGGATGATAATGAGAGGTTCTTGCAGAGACTCAGAGCCAGAAATGACAGAGTTGGGATTGATATTCCTAGAGTTGAAGTTAGATACGAGAACATATCTATTGAGGGAGATGCGTTCGTAGGAACCAGAGCACTTCCAACGCTGTGGAATTCCACCTTAAACGCACTAGAGGCTTTAATTGGATTGGTTGGACTCTCACCGTCGAAGAAAAGAGTTGTCAAGATACTTCAAGATGTGAGCGGTATTGTGAAACCATCGAGGATGACACTACTTCTTGGACCTCCTGCATCCGGAAAAACAACACTGCTAAAAGCACTTGCTGGCAAACTTGATAAAGATCTAAGGATACTTGGGTTAGATATCTGTGCTGATATAATGGTGGGAGATGACATGAGGAGAGGAATATCTGGTGGACAGAAGAAACGTGTAACTACCGCTCTTGGGGATACTAAAACTCTAATTGAAACTGATGACTCGCAAAGCAATAAGAAGCGACGATCCAATCCAGAAGGTACTGATATGCAAGTGAGAAATGGTCCAGCCAAAAAAGGAATGGTTTTGCCATTCCAGCCCTTGTCACTTGCTTTTAACCATGTGAACTACTACGTGGATATGCCTGCTGAAATGAAGACTCAAGGGGTTGAAGAGACCAGACTACAACTCCTACGTGATATTAGTGGTGCATTTAGGCCAGGTGTTTTGACTGCATTGGTTGGTGTCAGTGGTGCCGGAAAGACTACCCTAATGGATGTGTTAGCTGGAAGAAAGACAGGCGGGTACATTGAAGGAAGTATTACAATCTCTGGTTACCCAAAGAATCAAGCCACATTTGCTAGGGTCAGCGGTTACTGTGAACAAAATGACATTCATTCACCATATGTTACTGTTTATGAATCTCTCCTATACTCAGCCTGGCTGCGTCTTTCTAAAGATGTCAAGAAAGGAACACGGAAGATGTTTGTCGATGAGGTTATGGACTTGGTTGAGCTCAATCCTTTGAGGAATGCTTTAGTTGGACTTCCAGGAGTTGATGGGCTCTCAACTGAGCAAAGAAAGAGGCTCACCATTGCTGTGGAATTGGTTGCAAATCCTTCCATCATCTTTATGGATGAGCCAACCTCAGGTCTTGATGCTAGAGCAGCCGCAATTGTTATGCGTACTGTAAGAAACACAGTTGATACAGGACGAACCGTTGTTTGCACAATTCACCAACCTAGCATTGACATTTTTGAAGCTTTTGATGAGCTTTTCTTAATGAAAAGAGGAGGACAAGTGACTTATGCTGGGCCTCTAGGTCGCCAATCTCACAAGCTTGTTGAATATTTTGAGGCTATTCCAGGGGTTCCCAAGATCAAAGAGGGTTACAATCCTGCTACATGGATGTTGGAGGTCAGCTCTGCTGCGGTTGAGACCCAATTAAACATCGACTTCGCAGAGATATATGCAAACTCAGAACTCTACAAGAGAAATCAGGACCTTATCAAGGAACTAAGCACGCCTCAACCAGGGACCAAGGACCTTTACTTCCCCACCCAGTACTCCCAAACCTTTTTAACTCAGTGCAAGGCTTGCTTCTGGAAACAGCACTGGTCATACTGGAGGAACTCACGGTACAACGCCATTAGGTTTTTCATGACGGTTTGCATTGGCATATTATTCGGTGTGATCTTCTGGAGCAAAGGAGACCAAATAAACAAACAACAAGACCTGATCAATCTTTTGGGAGCTACCTATGCTGCTGTTCTTTTCCTCGGAGCTAGCAATGCCTCTGCCGTGCAATCTGTAGTGGCAGTTGAGCGAACAGTTTTCTACCGTGAAAGAGCTGCAGGAATGTACTCAGAGTTGCCTTATGCATTTGCTCAGGTGGCTATTGAGACGATTTACGTTGCAATCCAAACCTTTGTGTATTCCTGTCTTCTGTATTCTATGATCGGGTACAACTGGAAGGTGGAGAAATTTTTGTACTTCTACTACTTCATTTTCATGTGCTTTACCTACTTCTCAATGTACGGGATGATGGTGGTTGCCCTAACTCCTGGCCATCAAATTGCTGCAATTGTCATGTCTTTCTTCATGAGCTTCTGGAACTTGTTCTCTGGTTTCCTCATCCCTAGACCGCTTATCCCCATCTGGTGGAGGTGGTATTACTGGGGTTCTCCAGTTGCTTGGACCATCTATGGCATCTTCGGATCTCAAGTTGGTGACTTGAAGAAGGAGATCGACTTGCCTACCGGAGGAAAACAAGCAGTGAATGTTTTCCTCAAGGAGTATTTGGGTTATGACTATGACTTCCTCATTCCTGTAGTGGTTGCTCATGTTGGTTGGGTCCTCCTCTTCTTCTTTGTCTTTGCCTACGGTATCAAGTACCTTAACTTCCAAAGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

902

Amino Acids

101.84

Weight (kDa)

8.96

Isoelectric Point (pI)

43.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_trans_N	PF14510	109 - 157	5.3e-07	ABC-transporter N-terminal
ABC_tran	PF00005	329 - 481	4.5e-20	ABC transporter
ABC2_membrane	PF01061	626 - 838	2.4e-55	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003940)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29821 FvH4_c11g00010
malus_domestica	MD02G1041000.v1.1 MD08G1141000.v1.1
pyrus_communis	pycom05g17200 pycom14g01660
rosa_chinensis	RchiOBHm_Chr6g0286311
rosa_laevigata	RLG00000012581 RLG00000034948 RLG00000034949
rosa_multiflora	Rmu_co8063796.1_g000001 Rmu_co8130532.1_g000001 Rmu_co8356055.1_g000001 Rmu_co8362065.1_g000001 Rmu_co8518233.1_g000001 Rmu_sc0010154.1_g000003 Rmu_sc0024937.1_g000002 Rmu_sc0041504.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042760 Rroxscaffold_7G00169260 Rroxscaffold_7G00182440
rosa_samantha	Rh2CG374800 Rh5BG371500 Rh5BG371800 Rh5BG372200 Rh5BG372300 Rh5BG372500 Rh5CG394100 Rh5CG394300 Rh6CG295300 Rh6CG408800 Rh6DG395700 Rh6DG396100 Rh7DG199400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1046
AccB7I	CCANNNNNTGG	1 cut(s)	2454
AccBSI	CCGCTC	4 cut(s)	123, 178, 561, 758
AccII	CGCG	1 cut(s)	101
AccIII	TCCGGA	1 cut(s)	611
AclWI	GGATC	3 cut(s)	285, 813, 2518
AcoI	YGGCCR	2 cut(s)	15, 2359
AcsI	RAATTY	2 cut(s)	469, 2276
AfiI	CCNNNNNNNGG	8 cut(s)	177, 611, 762, 1442, 1804, 1826, 2454, 2555
AflIII	ACRYGT	2 cut(s)	108, 745
AgsI	TTSAA	8 cut(s)	398, 551, 785, 965, 1106, 1553, 1640, 2530
AjiI	CACGTC	1 cut(s)	109
AjnI	CCWGG	6 cut(s)	1012, 1232, 1342, 1657, 1825, 2356
Alw21I	GWGCWC	3 cut(s)	159, 454, 1311
Alw26I	GTCTC	5 cut(s)	343, 962, 1724, 1998, 2189
AlwI	GGATC	3 cut(s)	285, 813, 2518
Aor13HI	TCCGGA	1 cut(s)	611
AoxI	GGCC	5 cut(s)	15, 165, 1010, 1607, 2359
ApoI	RAATTY	2 cut(s)	469, 2276
Asp700I	GAANNNNTTC	2 cut(s)	2411, 2576
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	9 cut(s)	165, 599, 857, 1607, 1795, 1830, 1837, 2490, 2647
AsuC2I	CCSGG	1 cut(s)	86
AsuHPI	GGTGA	5 cut(s)	510, 1185, 1375, 1520, 2534
AsuNHI	GCTAGC	1 cut(s)	2078
AvaII	GGWCC	7 cut(s)	599, 857, 1795, 1830, 1837, 2490, 2647
AxyI	CCTNAGG	1 cut(s)	1441
BaeI	ACNNNNGTAYC	2 cut(s)	659, 692
BalI	TGGCCA	1 cut(s)	2361
BanI	GGYRCC	1 cut(s)	1046
BanII	GRGCYC	3 cut(s)	159, 1311, 1359
BarI	GAAGNNNNNNTAC	1 cut(s)	2678
BbsI	GAAGAC	3 cut(s)	30, 956, 2228
Bbv12I	GWGCWC	3 cut(s)	159, 454, 1311
BccI	CCATC	9 cut(s)	179, 292, 583, 1346, 1424, 2332, 2370, 2456, 2501
BceAI	ACGGC	1 cut(s)	2078
BcgI	CGANNNNNNTGC	2 cut(s)	1960, 1994
BciT130I	CCWGG	6 cut(s)	1014, 1234, 1344, 1659, 1827, 2358
BciVI	GTATCC	2 cut(s)	660, 760
BclI	TGATCA	1 cut(s)	2031
BcnI	CCSGG	1 cut(s)	86
BcoDI	GTCTC	5 cut(s)	343, 962, 1724, 1998, 2189
BfaI	CTAG	8 cut(s)	390, 488, 1155, 1455, 1536, 1613, 2079, 2433
BfmI	CTRYAG	3 cut(s)	2103, 2145, 2622
BfuI	GTATCC	2 cut(s)	660, 760
BglII	AGATCT	1 cut(s)	658
BmcAI	AGTACT	1 cut(s)	1859
Bme1390I	CCNGG	7 cut(s)	86, 1014, 1234, 1344, 1659, 1827, 2358
Bme18I	GGWCC	7 cut(s)	599, 857, 1795, 1830, 1837, 2490, 2647
BmgBI	CACGTC	1 cut(s)	109
BmgT120I	GGNCC	9 cut(s)	165, 599, 857, 1607, 1795, 1830, 1837, 2490, 2647
BmiI	GGNNCC	5 cut(s)	445, 1048, 1665, 1831, 2648
BmrFI	CCNGG	7 cut(s)	86, 1014, 1234, 1344, 1659, 1827, 2358
BmrI	ACTGGG	2 cut(s)	1849, 2479
BmsI	GCATC	4 cut(s)	421, 617, 1441, 2511
BmtI	GCTAGC	1 cut(s)	2082
BmuI	ACTGGG	2 cut(s)	1849, 2479
BpiI	GAAGAC	3 cut(s)	30, 956, 2228
BplI	GAGNNNNNCTC	4 cut(s)	1424, 1456, 1700, 1732
BpmI	CTGGAG	3 cut(s)	1939, 2014, 2463
Bpu10I	CCTNAGC	1 cut(s)	2181
BpuEI	CTTGAG	5 cut(s)	143, 296, 939, 2499, 2567
BpuMI	CCSGG	1 cut(s)	86
BsaAI	YACGTR	2 cut(s)	928, 989
BsaBI	GATNNNNATC	1 cut(s)	657
BsaI	GGTCTC	3 cut(s)	962, 1724, 1998
BsaJI	CCNNGG	4 cut(s)	1658, 1826, 1833, 2071
BsaWI	WCCGGW	2 cut(s)	611, 2552
BsaXI	ACNNNNNCTCC	6 cut(s)	146, 176, 966, 996, 1578, 1608
Bsc4I	CCNNNNNNNGG	8 cut(s)	177, 611, 762, 1442, 1804, 1826, 2454, 2555
Bse1I	ACTGG	6 cut(s)	1855, 1913, 1922, 2267, 2474, 2480
Bse21I	CCTNAGG	1 cut(s)	1441
Bse3DI	GCAATG	3 cut(s)	238, 1386, 2089
Bse8I	GATNNNNATC	1 cut(s)	657
BseAI	TCCGGA	1 cut(s)	611
BseBI	CCWGG	6 cut(s)	1014, 1234, 1344, 1659, 1827, 2358
BseDI	CCNNGG	4 cut(s)	1658, 1826, 1833, 2071
BseJI	GATNNNNATC	1 cut(s)	657
BseLI	CCNNNNNNNGG	8 cut(s)	177, 611, 762, 1442, 1804, 1826, 2454, 2555
BseMI	GCAATG	3 cut(s)	238, 1386, 2089
BseMII	CTCAG	8 cut(s)	367, 1242, 1356, 1455, 1785, 1892, 2172, 2195
BseNI	ACTGG	6 cut(s)	1855, 1913, 1922, 2267, 2474, 2480
BseRI	GAGGAG	7 cut(s)	161, 164, 167, 217, 730, 1599, 2642
BseYI	CCCAGC	1 cut(s)	1604
Bsh1236I	CGCG	1 cut(s)	101
Bsh1285I	CGRYCG	1 cut(s)	74
BshFI	GGCC	5 cut(s)	17, 167, 1012, 1609, 2361
BshNI	GGYRCC	1 cut(s)	1046
BsiEI	CGRYCG	1 cut(s)	74
BsiHKAI	GWGCWC	3 cut(s)	159, 454, 1311
BsiSI	CCGG	7 cut(s)	18, 58, 85, 104, 612, 1050, 2553
BslFI	GGGAC	1 cut(s)	1843
BslI	CCNNNNNNNGG	8 cut(s)	177, 611, 762, 1442, 1804, 1826, 2454, 2555
BsmAI	GTCTC	5 cut(s)	343, 962, 1724, 1998, 2189
BsmBI	CGTCTC	1 cut(s)	2189
BsmFI	GGGAC	1 cut(s)	1843
BsmI	GAATGC	1 cut(s)	1330
BsnI	GGCC	5 cut(s)	17, 167, 1012, 1609, 2361
Bso31I	GGTCTC	3 cut(s)	962, 1724, 1998
Bsp1286I	GDGCHC	4 cut(s)	159, 454, 1311, 1359
Bsp13I	TCCGGA	1 cut(s)	611
Bsp143I	GATC	9 cut(s)	277, 658, 818, 1671, 1986, 2031, 2250, 2510, 2538
BspANI	GGCC	5 cut(s)	17, 167, 1012, 1609, 2361
BspCNI	CTCAG	8 cut(s)	366, 1241, 1357, 1454, 1784, 1891, 2171, 2194
BspEI	TCCGGA	1 cut(s)	611
BspFNI	CGCG	1 cut(s)	101
BspHI	TCATGA	2 cut(s)	1953, 2394
BspLI	GGNNCC	5 cut(s)	445, 1048, 1665, 1831, 2648
BspMAI	CTGCAG	1 cut(s)	2149
BspOI	GCTAGC	1 cut(s)	2082
BspPI	GGATC	3 cut(s)	285, 813, 2518
BspT107I	GGYRCC	1 cut(s)	1046
BspTNI	GGTCTC	3 cut(s)	962, 1724, 1998
BsrBI	CCGCTC	4 cut(s)	123, 178, 561, 758
BsrDI	GCAATG	3 cut(s)	238, 1386, 2089
BsrI	ACTGG	6 cut(s)	1855, 1913, 1922, 2267, 2474, 2480
BssECI	CCNNGG	4 cut(s)	1658, 1826, 1833, 2071
BssMI	GATC	9 cut(s)	277, 658, 818, 1671, 1986, 2031, 2250, 2510, 2538
BssT1I	CCWWGG	1 cut(s)	1833
Bst2UI	CCWGG	6 cut(s)	1014, 1234, 1344, 1659, 1827, 2358
Bst6I	CTCTTC	2 cut(s)	960, 2660
BstAPI	GCANNNNNTGC	1 cut(s)	1890
BstBAI	YACGTR	2 cut(s)	928, 989
BstC8I	GCNNGC	7 cut(s)	68, 125, 643, 939, 1817, 1891, 2080
BstEII	GGTNACC	1 cut(s)	1127
BstENI	CCTNNNNNAGG	3 cut(s)	1802, 1824, 2553
BstFNI	CGCG	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	9 cut(s)	280, 661, 821, 1674, 1989, 2034, 2253, 2513, 2541
BstMAI	GTCTC	5 cut(s)	343, 962, 1724, 1998, 2189
BstMBI	GATC	9 cut(s)	277, 658, 818, 1671, 1986, 2031, 2250, 2510, 2538
BstMCI	CGRYCG	1 cut(s)	74
BstNI	CCWGG	6 cut(s)	1014, 1234, 1344, 1659, 1827, 2358
BstNSI	RCATGY	1 cut(s)	214
BstPI	GGTNACC	1 cut(s)	1127
BstSCI	CCNGG	7 cut(s)	84, 1012, 1232, 1342, 1657, 1825, 2356
BstSFI	CTRYAG	3 cut(s)	2103, 2145, 2622
BstUI	CGCG	1 cut(s)	101
BstV2I	GAAGAC	3 cut(s)	30, 956, 2228
BstX2I	RGATCY	2 cut(s)	658, 2510
BstXI	CCANNNNNNTGG	3 cut(s)	465, 1393, 2487
BstYI	RGATCY	2 cut(s)	658, 2510
Bsu36I	CCTNAGG	1 cut(s)	1441
BsuI	GTATCC	2 cut(s)	660, 760
BsuRI	GGCC	5 cut(s)	17, 167, 1012, 1609, 2361
BtrI	CACGTC	1 cut(s)	109
BtsI	GCAGTG	2 cut(s)	623, 2574
BtsIMutI	CAGTG	5 cut(s)	623, 1048, 1886, 1906, 2574
Cac8I	GCNNGC	7 cut(s)	68, 125, 643, 939, 1817, 1891, 2080
CciI	TCATGA	2 cut(s)	1953, 2394
CfoI	GCGC	1 cut(s)	103
Cfr13I	GGNCC	9 cut(s)	165, 599, 857, 1607, 1795, 1830, 1837, 2490, 2647
CseI	GACGC	1 cut(s)	1229
CviAII	CATG	9 cut(s)	211, 712, 914, 1698, 1954, 2305, 2383, 2395, 2636
DpnI	GATC	9 cut(s)	279, 660, 820, 1673, 1988, 2033, 2252, 2512, 2540
DpnII	GATC	9 cut(s)	277, 658, 818, 1671, 1986, 2031, 2250, 2510, 2538
EaeI	YGGCCR	2 cut(s)	15, 2359
Eam1104I	CTCTTC	2 cut(s)	960, 2660
EarI	CTCTTC	2 cut(s)	960, 2660
Ecl136II	GAGCTC	2 cut(s)	157, 1309
Eco130I	CCWWGG	1 cut(s)	1833
Eco24I	GRGCYC	3 cut(s)	159, 1311, 1359
Eco31I	GGTCTC	3 cut(s)	962, 1724, 1998
Eco32I	GATATC	1 cut(s)	682
Eco47I	GGWCC	7 cut(s)	599, 857, 1795, 1830, 1837, 2490, 2647
Eco53kI	GAGCTC	2 cut(s)	157, 1309
Eco81I	CCTNAGG	1 cut(s)	1441
Eco91I	GGTNACC	1 cut(s)	1127
EcoICRI	GAGCTC	2 cut(s)	157, 1309
EcoNI	CCTNNNNNAGG	3 cut(s)	1802, 1824, 2553
EcoO109I	RGGNCCY	3 cut(s)	1795, 1837, 2647
EcoO65I	GGTNACC	1 cut(s)	1127
EcoRI	GAATTC	1 cut(s)	469
EcoRII	CCWGG	6 cut(s)	1012, 1232, 1342, 1657, 1825, 2356
EcoRV	GATATC	1 cut(s)	682
EcoT14I	CCWWGG	1 cut(s)	1833
EcoT22I	ATGCAT	1 cut(s)	2176
EcoT38I	GRGCYC	3 cut(s)	159, 1311, 1359
ErhI	CCWWGG	1 cut(s)	1833
Esp3I	CGTCTC	1 cut(s)	2189
FaeI	CATG	9 cut(s)	214, 715, 917, 1701, 1957, 2308, 2386, 2398, 2639
FalI	AAGNNNNNCTT	2 cut(s)	1877, 1909
FaqI	GGGAC	1 cut(s)	1843
FatI	CATG	9 cut(s)	210, 711, 913, 1697, 1953, 2304, 2382, 2394, 2635
FauI	CCCGC	2 cut(s)	116, 1088
FauNDI	CATATG	1 cut(s)	1198
FbaI	TGATCA	1 cut(s)	2031
FriOI	GRGCYC	3 cut(s)	159, 1311, 1359
FspBI	CTAG	8 cut(s)	390, 488, 1155, 1455, 1536, 1613, 2079, 2433
GlaI	GCGC	1 cut(s)	102
GsaI	CCCAGC	1 cut(s)	1608
GsuI	CTGGAG	3 cut(s)	1939, 2014, 2463
HaeIII	GGCC	5 cut(s)	17, 167, 1012, 1609, 2361
HapII	CCGG	7 cut(s)	18, 58, 85, 104, 612, 1050, 2553
HgaI	GACGC	1 cut(s)	1229
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	9 cut(s)	214, 715, 917, 1701, 1957, 2308, 2386, 2398, 2639
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HindIII	AAGCTT	2 cut(s)	1554, 1631
HinfI	GANTC	7 cut(s)	268, 351, 513, 794, 952, 1138, 1214
HpaII	CCGG	7 cut(s)	18, 58, 85, 104, 612, 1050, 2553
HphI	GGTGA	5 cut(s)	510, 1185, 1375, 1520, 2534
Hpy166II	GTNNAC	3 cut(s)	734, 919, 1175
Hpy188I	TCNGA	5 cut(s)	356, 1774, 2075, 2161, 2510
Hpy8I	GTNNAC	3 cut(s)	734, 919, 1175
Hpy99I	CGWCG	3 cut(s)	79, 526, 819
HpyAV	CCTTC	5 cut(s)	824, 1100, 1422, 2260, 2527
HpyCH4IV	ACGT	5 cut(s)	108, 745, 927, 988, 2205
HpySE526I	ACGT	5 cut(s)	108, 745, 927, 988, 2205
Hsp92II	CATG	9 cut(s)	214, 715, 917, 1701, 1957, 2308, 2386, 2398, 2639
HspAI	GCGC	1 cut(s)	101
Kpn2I	TCCGGA	1 cut(s)	611
Ksp22I	TGATCA	1 cut(s)	2031
Kzo9I	GATC	9 cut(s)	277, 658, 818, 1671, 1986, 2031, 2250, 2510, 2538
LmnI	GCTCC	6 cut(s)	60, 120, 154, 1995, 2045, 2075
LweI	GCATC	4 cut(s)	421, 617, 1441, 2511
MaeI	CTAG	8 cut(s)	390, 488, 1155, 1455, 1536, 1613, 2079, 2433
MaeII	ACGT	5 cut(s)	108, 745, 927, 988, 2205
MaeIII	GTNAC	8 cut(s)	748, 897, 1127, 1166, 1201, 1594, 1682, 2522
MalI	GATC	9 cut(s)	279, 660, 820, 1673, 1988, 2033, 2252, 2512, 2540
MbiI	CCGCTC	4 cut(s)	123, 178, 561, 758
MboI	GATC	9 cut(s)	277, 658, 818, 1671, 1986, 2031, 2250, 2510, 2538
MfeI	CAATTG	2 cut(s)	1467, 2376
MflI	RGATCY	2 cut(s)	658, 2510
MhlI	GDGCHC	4 cut(s)	159, 454, 1311, 1359
MlsI	TGGCCA	1 cut(s)	2361
MluNI	TGGCCA	1 cut(s)	2361
MlyI	GAGTC	4 cut(s)	345, 507, 788, 946
MmeI	TCCRAC	4 cut(s)	482, 490, 1315, 1686
Mox20I	TGGCCA	1 cut(s)	2361
Mph1103I	ATGCAT	1 cut(s)	2176
MroI	TCCGGA	1 cut(s)	611
MroXI	GAANNNNTTC	2 cut(s)	2411, 2576
MscI	TGGCCA	1 cut(s)	2361
MseI	TTAA	8 cut(s)	29, 479, 497, 909, 1574, 1739, 1874, 2691
MslI	CAYNNNNRTG	3 cut(s)	1391, 1424, 2303
Msp20I	TGGCCA	1 cut(s)	2361
MspA1I	CMGCKG	3 cut(s)	66, 118, 1164
MspI	CCGG	7 cut(s)	18, 58, 85, 104, 612, 1050, 2553
MspR9I	CCNGG	7 cut(s)	86, 1014, 1234, 1344, 1659, 1827, 2358
MunI	CAATTG	2 cut(s)	1467, 2376
Mva1269I	GAATGC	1 cut(s)	1330
MvaI	CCWGG	6 cut(s)	1014, 1234, 1344, 1659, 1827, 2358
MvnI	CGCG	1 cut(s)	101
NciI	CCSGG	1 cut(s)	86
NdeI	CATATG	1 cut(s)	1198
NdeII	GATC	9 cut(s)	277, 658, 818, 1671, 1986, 2031, 2250, 2510, 2538
NheI	GCTAGC	1 cut(s)	2078
NlaIII	CATG	9 cut(s)	214, 715, 917, 1701, 1957, 2308, 2386, 2398, 2639
NlaIV	GGNNCC	5 cut(s)	445, 1048, 1665, 1831, 2648
NmuCI	GTSAC	3 cut(s)	897, 1594, 2522
NsiI	ATGCAT	1 cut(s)	2176
NspI	RCATGY	1 cut(s)	214
PagI	TCATGA	2 cut(s)	1953, 2394
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PctI	GAATGC	1 cut(s)	1330
PdmI	GAANNNNTTC	2 cut(s)	2411, 2576
PfeI	GAWTC	3 cut(s)	268, 1138, 1214
PflMI	CCANNNNNTGG	1 cut(s)	2454
PfoI	TCCNGGA	2 cut(s)	84, 1342
PleI	GAGTC	4 cut(s)	345, 507, 788, 946
PpsI	GAGTC	4 cut(s)	345, 507, 788, 946
Ppu21I	YACGTR	2 cut(s)	928, 989
PpuMI	RGGWCCY	3 cut(s)	1795, 1837, 2647
Psp124BI	GAGCTC	2 cut(s)	159, 1311
Psp5II	RGGWCCY	3 cut(s)	1795, 1837, 2647
Psp6I	CCWGG	6 cut(s)	1012, 1232, 1342, 1657, 1825, 2356
PspEI	GGTNACC	1 cut(s)	1127
PspFI	CCCAGC	1 cut(s)	1604
PspGI	CCWGG	6 cut(s)	1012, 1232, 1342, 1657, 1825, 2356
PspN4I	GGNNCC	5 cut(s)	445, 1048, 1665, 1831, 2648
PspPI	GGNCC	9 cut(s)	165, 599, 857, 1607, 1795, 1830, 1837, 2490, 2647
PspPPI	RGGWCCY	3 cut(s)	1795, 1837, 2647
PsrI	GAACNNNNNNTAC	2 cut(s)	1916, 1948
PstI	CTGCAG	1 cut(s)	2149
PsuI	RGATCY	2 cut(s)	658, 2510
PvuII	CAGCTG	1 cut(s)	66
RseI	CAYNNNNRTG	3 cut(s)	1391, 1424, 2303
SacI	GAGCTC	2 cut(s)	159, 1311
SaqAI	TTAA	8 cut(s)	29, 479, 497, 909, 1574, 1739, 1874, 2691
Sau3AI	GATC	9 cut(s)	277, 658, 818, 1671, 1986, 2031, 2250, 2510, 2538
Sau96I	GGNCC	9 cut(s)	165, 599, 857, 1607, 1795, 1830, 1837, 2490, 2647
ScaI	AGTACT	1 cut(s)	1859
SchI	GAGTC	4 cut(s)	345, 507, 788, 946
ScrFI	CCNGG	7 cut(s)	86, 1014, 1234, 1344, 1659, 1827, 2358
SduI	GDGCHC	4 cut(s)	159, 454, 1311, 1359
SfaNI	GCATC	4 cut(s)	421, 617, 1441, 2511
SfcI	CTRYAG	3 cut(s)	2103, 2145, 2622
SinI	GGWCC	7 cut(s)	599, 857, 1795, 1830, 1837, 2490, 2647
SmiMI	CAYNNNNRTG	3 cut(s)	1391, 1424, 2303
SmlI	CTYRAG	5 cut(s)	158, 311, 954, 2514, 2582
SmoI	CTYRAG	5 cut(s)	158, 311, 954, 2514, 2582
SspI	AATATT	1 cut(s)	1643
SspMI	CTAG	8 cut(s)	390, 488, 1155, 1455, 1536, 1613, 2079, 2433
SstI	GAGCTC	2 cut(s)	159, 1311
StyD4I	CCNGG	7 cut(s)	84, 1012, 1232, 1342, 1657, 1825, 2356
StyI	CCWWGG	1 cut(s)	1833
TaiI	ACGT	5 cut(s)	111, 748, 930, 991, 2208
TaqI	TCGA	8 cut(s)	41, 77, 174, 524, 578, 1284, 1746, 2541
TatI	WGTACW	3 cut(s)	1857, 2154, 2283
TauI	GCSGC	5 cut(s)	8, 11, 130, 170, 1466
TfiI	GAWTC	3 cut(s)	268, 1138, 1214
Tru1I	TTAA	8 cut(s)	29, 479, 497, 909, 1574, 1739, 1874, 2691
Tru9I	TTAA	8 cut(s)	29, 479, 497, 909, 1574, 1739, 1874, 2691
TscAI	CASTG	5 cut(s)	630, 1048, 1886, 1913, 2574
TseFI	GTSAC	3 cut(s)	897, 1594, 2522
Tsp45I	GTSAC	3 cut(s)	897, 1594, 2522
TspDTI	ATGAA	9 cut(s)	264, 962, 1178, 1227, 1592, 1942, 2287, 2293, 2383
TspGWI	ACGGA	1 cut(s)	1285
TspRI	CASTG	5 cut(s)	630, 1048, 1886, 1913, 2574
Van91I	CCANNNNNTGG	1 cut(s)	2454
VpaK11BI	GGWCC	7 cut(s)	599, 857, 1795, 1830, 1837, 2490, 2647
XagI	CCTNNNNNAGG	3 cut(s)	1802, 1824, 2553
XapI	RAATTY	2 cut(s)	469, 2276
XceI	RCATGY	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	2 cut(s)	871, 1423
XmnI	GAANNNNTTC	2 cut(s)	2411, 2576
XspI	CTAG	8 cut(s)	390, 488, 1155, 1455, 1536, 1613, 2079, 2433
ZrmI	AGTACT	1 cut(s)	1859
Zsp2I	ATGCAT	1 cut(s)	2176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.