Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003940

Physical Location & Seq

Genomic Coordinates Reverse (-)

18775226 .. 18777455

Gene Structure 2230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG199400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGACGACATGGGGTGCCATTGAGAGACTGCCTACGTATTCACGCACAAGGAGAGGCATTCTACTCGGTCAAGGTCAAGAGGAGGACGGTGAAAGCAGAGAGATTGATATAAAGAAGAATCTTGGACTACCAGAGAGGAAGACTTTGTTGGAGAGGCTAGTGAAGATTGTTGAGCAAGACAATGACAAGTTCTTGCTCAAGATCAAGGACCGCATGAATAGAGTTGGACTTGAATTTCCAACAACTGAAGTGCGGTTCGAGAATTTAAATGTTGAAGCAGAAGCTTATGTAGGAAGCAGGGCATCATCTACAATGTTCAACTTCTCTATTAATATGTTAGAGGGGTTCCTGAATTATTTTCACATTCTTCCAAGTAGAAAGAGACCATTTACAATCCTCCATGATGTAAGAGGGATTATCAAGCCAAGAAGAATGACACTTCTTTTAGGCCCCCCTGGCTCTGGAAAGACGACGTTACTATTGGCCTTGGCTGGAAAACTCGGTAAAGCTAATCTAAAATTTTCGGGGAGAGTTACATACAATGGAATTGAGATGGATGAGTTTGTATCAGAGAGGACATCAGCTTATGTCAGTCAACATGATCTCCACATACCAGAATTGACAGTGAGAGAAACACTGGCTTTTGCAGCTAGATGTCAAGGTGTTGGACCGCGTTATGAAATGTTGGTGGAATTATTAAGGAGAGAAAAGGCTGCAAATATTATGCCAGATCTTGATCTTGATCTCTACATGAAGGCAGCAGCACTAGAAGGACAGGAAACTAATATTGTTACAGACTTTATTCTCAAGGTTTTGGGACTCGAAGATTGTGCTGACATTATGGTAGGAGATGAAATGACCAGAGGTATCTCTGGTGGACAAAAAAAGCGACTCACCACAGGGGAGATGCTGGTTGGACCAGAAAGAGTACTTCTTATGGATGAGATATCAAACGGGCTGGACAGTTCAACAACATTGCAAATAGTGAAATCACTACAACAATACGTCCACATTCTCAACGGAACTGCATTGATTGCTCTACTGCAGCCAGCACCAGAGACTTATGATCTCTTCGATGATATAATTCTCCTTTCGGATGGCTACATTGTGTATCAAGGTCCCCGTGAGAATGTTCTTGAGTTCTTTGAGTACATGGGCTTCAAATGTCCAGAGAGGAAAGGAGTTGCTGATTTCCTACAAGAGGTACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

403

Amino Acids

45.43

Weight (kDa)

5.44

Isoelectric Point (pI)

39.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_trans_N	PF14510	58 - 108	4.2e-07	ABC-transporter N-terminal
ABC_tran	PF00005	133 - 316	2.8e-18	ABC transporter
ABC2_membrane_7	PF19055	349 - 398	4.6e-06	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003940)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29821 FvH4_c11g00010
malus_domestica	MD02G1041000.v1.1 MD08G1141000.v1.1
pyrus_communis	pycom05g17200 pycom14g01660
rosa_chinensis	RchiOBHm_Chr6g0286311
rosa_laevigata	RLG00000012581 RLG00000034948 RLG00000034949
rosa_multiflora	Rmu_co8063796.1_g000001 Rmu_co8130532.1_g000001 Rmu_co8356055.1_g000001 Rmu_co8362065.1_g000001 Rmu_co8518233.1_g000001 Rmu_sc0010154.1_g000003 Rmu_sc0024937.1_g000002 Rmu_sc0041504.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042760 Rroxscaffold_7G00169260 Rroxscaffold_7G00182440
rosa_samantha	Rh2CG374800 Rh5BG371500 Rh5BG371800 Rh5BG372200 Rh5BG372300 Rh5BG372500 Rh5CG394100 Rh5CG394300 Rh6CG295300 Rh6CG408800 Rh6DG395700 Rh6DG396100 Rh7DG199400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1204
AccB1I	GGYRCC	2 cut(s)	14, 1204
AccII	CGCG	1 cut(s)	673
AciI	CCGC	3 cut(s)	211, 253, 671
AcsI	RAATTY	3 cut(s)	233, 262, 518
AcuI	CTGAAG	1 cut(s)	267
AfaI	GTAC	3 cut(s)	930, 1151, 1206
AfiI	CCNNNNNNNGG	2 cut(s)	461, 1201
AgsI	TTSAA	5 cut(s)	233, 275, 319, 969, 1162
AjnI	CCWGG	1 cut(s)	454
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AluBI	AGCT	4 cut(s)	284, 509, 584, 650
AluI	AGCT	4 cut(s)	284, 509, 584, 650
Alw26I	GTCTC	3 cut(s)	19, 376, 1052
AoxI	GGCC	2 cut(s)	448, 483
ApeKI	GCWGC	5 cut(s)	647, 713, 758, 761, 1045
ApoI	RAATTY	3 cut(s)	233, 262, 518
AseI	ATTAAT	1 cut(s)	330
Asp718I	GGTACC	1 cut(s)	1204
AspS9I	GGNCC	5 cut(s)	208, 449, 668, 917, 1118
AsuHPI	GGTGA	2 cut(s)	101, 886
AvaII	GGWCC	4 cut(s)	208, 668, 917, 1118
BanI	GGYRCC	2 cut(s)	14, 1204
BarI	GAAGNNNNNNTAC	2 cut(s)	1142, 1174
BbsI	GAAGAC	1 cut(s)	146
BbvI	GCAGC	5 cut(s)	659, 700, 770, 773, 1057
BccI	CCATC	2 cut(s)	547, 1091
BcgI	CGANNNNNNTGC	4 cut(s)	46, 80, 812, 846
BciT130I	CCWGG	1 cut(s)	456
BcoDI	GTCTC	3 cut(s)	19, 376, 1052
BfaI	CTAG	3 cut(s)	158, 651, 767
BfmI	CTRYAG	1 cut(s)	1043
BglI	GCCNNNNNGGC	1 cut(s)	456
BglII	AGATCT	1 cut(s)	730
BisI	GCNGC	5 cut(s)	648, 714, 759, 762, 1046
BlsI	GCNGC	5 cut(s)	649, 715, 760, 763, 1047
BmcAI	AGTACT	1 cut(s)	930
Bme1390I	CCNGG	1 cut(s)	456
Bme18I	GGWCC	4 cut(s)	208, 668, 917, 1118
BmgT120I	GGNCC	5 cut(s)	208, 449, 668, 917, 1118
BmiI	GGNNCC	5 cut(s)	16, 347, 451, 1120, 1206
BmrFI	CCNGG	1 cut(s)	456
BmsI	GCATC	2 cut(s)	311, 897
BpiI	GAAGAC	1 cut(s)	146
BpuEI	CTTGAG	3 cut(s)	182, 791, 1157
BsaAI	YACGTR	1 cut(s)	36
BsaBI	GATNNNNATC	2 cut(s)	735, 741
BsaI	GGTCTC	1 cut(s)	376
BsaJI	CCNNGG	2 cut(s)	454, 486
BsaXI	ACNNNNNCTCC	2 cut(s)	588, 618
Bsc4I	CCNNNNNNNGG	2 cut(s)	461, 1201
Bse1I	ACTGG	1 cut(s)	642
Bse3DI	GCAATG	1 cut(s)	974
Bse8I	GATNNNNATC	2 cut(s)	735, 741
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	2 cut(s)	454, 486
BseGI	GGATG	3 cut(s)	562, 946, 1102
BseJI	GATNNNNATC	2 cut(s)	735, 741
BseLI	CCNNNNNNNGG	2 cut(s)	461, 1201
BseMI	GCAATG	1 cut(s)	974
BseNI	ACTGG	1 cut(s)	642
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	5 cut(s)	659, 700, 770, 773, 1057
Bsh1236I	CGCG	1 cut(s)	673
BshFI	GGCC	2 cut(s)	450, 485
BshNI	GGYRCC	2 cut(s)	14, 1204
BslFI	GGGAC	2 cut(s)	831, 1104
BslI	CCNNNNNNNGG	2 cut(s)	461, 1201
BsmAI	GTCTC	3 cut(s)	19, 376, 1052
BsmFI	GGGAC	2 cut(s)	831, 1104
BsmI	GAATGC	1 cut(s)	57
BsnI	GGCC	2 cut(s)	450, 485
Bso31I	GGTCTC	1 cut(s)	376
Bsp143I	GATC	6 cut(s)	201, 601, 730, 736, 742, 1066
BspACI	CCGC	3 cut(s)	211, 253, 671
BspANI	GGCC	2 cut(s)	450, 485
BspFNI	CGCG	1 cut(s)	673
BspLI	GGNNCC	5 cut(s)	16, 347, 451, 1120, 1206
BspMAI	CTGCAG	1 cut(s)	1047
BspT107I	GGYRCC	2 cut(s)	14, 1204
BspTNI	GGTCTC	1 cut(s)	376
BsrDI	GCAATG	1 cut(s)	974
BsrI	ACTGG	1 cut(s)	642
BssECI	CCNNGG	2 cut(s)	454, 486
BssMI	GATC	6 cut(s)	201, 601, 730, 736, 742, 1066
BssT1I	CCWWGG	1 cut(s)	486
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	3 cut(s)	89, 625, 965
Bst6I	CTCTTC	1 cut(s)	1076
BstAPI	GCANNNNNTGC	1 cut(s)	1034
BstBAI	YACGTR	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	1050
BstENI	CCTNNNNNAGG	1 cut(s)	1199
BstF5I	GGATG	3 cut(s)	562, 946, 1102
BstFNI	CGCG	1 cut(s)	673
BstKTI	GATC	6 cut(s)	204, 604, 733, 739, 745, 1069
BstMAI	GTCTC	3 cut(s)	19, 376, 1052
BstMBI	GATC	6 cut(s)	201, 601, 730, 736, 742, 1066
BstMWI	GCNNNNNNNGC	3 cut(s)	456, 647, 1034
BstNI	CCWGG	1 cut(s)	456
BstSCI	CCNGG	1 cut(s)	454
BstSFI	CTRYAG	1 cut(s)	1043
BstSNI	TACGTA	1 cut(s)	36
BstUI	CGCG	1 cut(s)	673
BstV1I	GCAGC	5 cut(s)	659, 700, 770, 773, 1057
BstV2I	GAAGAC	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	730
BstYI	RGATCY	1 cut(s)	730
BsuRI	GGCC	2 cut(s)	450, 485
BtsCI	GGATG	3 cut(s)	562, 946, 1102
BtsIMutI	CAGTG	2 cut(s)	630, 635
Cac8I	GCNNGC	1 cut(s)	1050
Cfr13I	GGNCC	5 cut(s)	208, 449, 668, 917, 1118
Csp6I	GTAC	3 cut(s)	929, 1150, 1205
CviAII	CATG	6 cut(s)	9, 214, 401, 599, 751, 1153
CviQI	GTAC	3 cut(s)	929, 1150, 1205
DpnI	GATC	6 cut(s)	203, 603, 732, 738, 744, 1068
DpnII	GATC	6 cut(s)	201, 601, 730, 736, 742, 1066
DraI	TTTAAA	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	1076
EarI	CTCTTC	1 cut(s)	1076
Eco105I	TACGTA	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	486
Eco31I	GGTCTC	1 cut(s)	376
Eco32I	GATATC	1 cut(s)	948
Eco47I	GGWCC	4 cut(s)	208, 668, 917, 1118
Eco57I	CTGAAG	1 cut(s)	267
EcoNI	CCTNNNNNAGG	1 cut(s)	1199
EcoO109I	RGGNCCY	2 cut(s)	449, 1118
EcoRII	CCWGG	1 cut(s)	454
EcoRV	GATATC	1 cut(s)	948
EcoT14I	CCWWGG	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	6 cut(s)	12, 217, 404, 602, 754, 1156
FaqI	GGGAC	2 cut(s)	831, 1104
FatI	CATG	6 cut(s)	8, 213, 400, 598, 750, 1152
Fnu4HI	GCNGC	5 cut(s)	648, 714, 759, 762, 1046
FokI	GGATG	3 cut(s)	569, 953, 1109
Fsp4HI	GCNGC	5 cut(s)	648, 714, 759, 762, 1046
FspBI	CTAG	3 cut(s)	158, 651, 767
GluI	GCNGC	5 cut(s)	648, 714, 759, 762, 1046
HaeIII	GGCC	2 cut(s)	450, 485
Hin1II	CATG	6 cut(s)	12, 217, 404, 602, 754, 1156
HincII	GTYRAC	1 cut(s)	596
HindII	GTYRAC	1 cut(s)	596
HindIII	AAGCTT	1 cut(s)	282
HinfI	GANTC	3 cut(s)	118, 819, 891
HphI	GGTGA	2 cut(s)	101, 886
Hpy166II	GTNNAC	3 cut(s)	596, 878, 1009
Hpy188I	TCNGA	2 cut(s)	571, 1096
Hpy188III	TCNNGA	9 cut(s)	77, 199, 259, 349, 462, 734, 740, 1136, 1169
Hpy8I	GTNNAC	3 cut(s)	596, 878, 1009
Hpy99I	CGWCG	1 cut(s)	475
HpyAV	CCTTC	2 cut(s)	748, 764
HpyCH4III	ACNGT	3 cut(s)	89, 625, 965
HpyCH4IV	ACGT	3 cut(s)	35, 473, 1005
HpyCH4V	TGCA	5 cut(s)	647, 716, 979, 1028, 1045
HpyF10VI	GCNNNNNNNGC	3 cut(s)	456, 647, 1034
HpySE526I	ACGT	3 cut(s)	35, 473, 1005
Hsp92II	CATG	6 cut(s)	12, 217, 404, 602, 754, 1156
KpnI	GGTACC	1 cut(s)	1208
Kzo9I	GATC	6 cut(s)	201, 601, 730, 736, 742, 1066
Lsp1109I	GCAGC	5 cut(s)	659, 700, 770, 773, 1057
LweI	GCATC	2 cut(s)	311, 897
MaeI	CTAG	3 cut(s)	158, 651, 767
MaeII	ACGT	3 cut(s)	35, 473, 1005
MaeIII	GTNAC	3 cut(s)	474, 532, 790
MalI	GATC	6 cut(s)	203, 603, 732, 738, 744, 1068
MboI	GATC	6 cut(s)	201, 601, 730, 736, 742, 1066
MboII	GAAGA	7 cut(s)	127, 151, 175, 359, 441, 836, 1063
MflI	RGATCY	1 cut(s)	730
MluCI	AATT	8 cut(s)	233, 262, 352, 518, 546, 617, 692, 1083
MlyI	GAGTC	2 cut(s)	813, 885
MmeI	TCCRAC	5 cut(s)	129, 205, 263, 646, 895
MseI	TTAA	4 cut(s)	266, 330, 698, 1210
MspR9I	CCNGG	1 cut(s)	456
Mva1269I	GAATGC	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	456
MvnI	CGCG	1 cut(s)	673
MwoI	GCNNNNNNNGC	3 cut(s)	456, 647, 1034
NdeII	GATC	6 cut(s)	201, 601, 730, 736, 742, 1066
NlaIII	CATG	6 cut(s)	12, 217, 404, 602, 754, 1156
NlaIV	GGNNCC	5 cut(s)	16, 347, 451, 1120, 1206
PctI	GAATGC	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	118
PkrI	GCNGC	5 cut(s)	649, 715, 760, 763, 1047
PleI	GAGTC	2 cut(s)	813, 885
PpsI	GAGTC	2 cut(s)	813, 885
Ppu21I	YACGTR	1 cut(s)	36
PpuMI	RGGWCCY	1 cut(s)	1118
PshBI	ATTAAT	1 cut(s)	330
Psp5II	RGGWCCY	1 cut(s)	1118
Psp6I	CCWGG	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	5 cut(s)	16, 347, 451, 1120, 1206
PspPI	GGNCC	5 cut(s)	208, 449, 668, 917, 1118
PspPPI	RGGWCCY	1 cut(s)	1118
PstI	CTGCAG	1 cut(s)	1047
PsuI	RGATCY	1 cut(s)	730
RsaI	GTAC	3 cut(s)	930, 1151, 1206
RsaNI	GTAC	3 cut(s)	929, 1150, 1205
SaqAI	TTAA	4 cut(s)	266, 330, 698, 1210
SatI	GCNGC	5 cut(s)	648, 714, 759, 762, 1046
Sau3AI	GATC	6 cut(s)	201, 601, 730, 736, 742, 1066
Sau96I	GGNCC	5 cut(s)	208, 449, 668, 917, 1118
ScaI	AGTACT	1 cut(s)	930
SchI	GAGTC	2 cut(s)	813, 885
ScrFI	CCNGG	1 cut(s)	456
SfaNI	GCATC	2 cut(s)	311, 897
SfcI	CTRYAG	1 cut(s)	1043
SinI	GGWCC	4 cut(s)	208, 668, 917, 1118
SmiI	ATTTAAAT	1 cut(s)	267
SmlI	CTYRAG	3 cut(s)	197, 806, 1136
SmoI	CTYRAG	3 cut(s)	197, 806, 1136
SnaBI	TACGTA	1 cut(s)	36
Sse9I	AATT	8 cut(s)	233, 262, 352, 518, 546, 617, 692, 1083
SsiI	CCGC	3 cut(s)	211, 253, 671
SspI	AATATT	2 cut(s)	721, 787
SspMI	CTAG	3 cut(s)	158, 651, 767
StyD4I	CCNGG	1 cut(s)	454
StyI	CCWWGG	1 cut(s)	486
SwaI	ATTTAAAT	1 cut(s)	267
TaaI	ACNGT	3 cut(s)	89, 625, 965
TaiI	ACGT	3 cut(s)	38, 476, 1008
TaqI	TCGA	3 cut(s)	258, 822, 1074
TaqII	GACCGA	1 cut(s)	56
TasI	AATT	8 cut(s)	233, 262, 352, 518, 546, 617, 692, 1083
TatI	WGTACW	2 cut(s)	928, 1149
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	4 cut(s)	266, 330, 698, 1210
Tru9I	TTAA	4 cut(s)	266, 330, 698, 1210
TscAI	CASTG	2 cut(s)	630, 642
TseI	GCWGC	5 cut(s)	647, 713, 758, 761, 1045
TspDTI	ATGAA	4 cut(s)	230, 693, 767, 867
TspGWI	ACGGA	1 cut(s)	1035
TspRI	CASTG	2 cut(s)	630, 642
VpaK11BI	GGWCC	4 cut(s)	208, 668, 917, 1118
VspI	ATTAAT	1 cut(s)	330
XagI	CCTNNNNNAGG	1 cut(s)	1199
XapI	RAATTY	3 cut(s)	233, 262, 518
XspI	CTAG	3 cut(s)	158, 651, 767
ZrmI	AGTACT	1 cut(s)	930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.