Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003940

Physical Location & Seq

Genomic Coordinates Reverse (-)

3351417 .. 3352976

Gene Structure 1560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1041000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTGGAACTCGGCGGAGAACGTGTTCGCGAGATCGGGGTCGTTTCAGGAGGGAGGGGACGATGAGGAGGCGCTGCGGTGGGCCGCGCTGGAGCGGCTCCCGACCTACGCCCGAGTACGGCGCGGCATTTTCAGAAACGTCGTCGGAGACACTATGGAGATCGACGTCGGCGAGCTCGAGGCTAAGGAGCAGAAGCCCAATCTCGACCGGCTTGTTAGCTCCGCCGCCGACGACCCCGAACAATTCTTCGATCGCATGCGCCGCAGATTTGACGCAGTAGCATTGAATTTTCCGAAGATCGAGGTCCGATTTCAGAACTTGAAGGTTGAAGCTTTCGTCCATGTCGGAAGCAGAGCGCTGCCGACTATTCCCAATTTTGTTTTTAATATGACGGAGGCAATTGGTATATACAGGGGGCAGAGAAGCAAATTAATTATTTTAGACAACATTAGCGGGATTATAAGACCTTCAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0042221 GO:0042335 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

159

Amino Acids

18.06

Weight (kDa)

6.62

Isoelectric Point (pI)

47.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_trans_N	PF14510	60 - 126	9.8e-10	ABC-transporter N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003940)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29821 FvH4_c11g00010
malus_domestica	MD02G1041000.v1.1 MD08G1141000.v1.1
pyrus_communis	pycom05g17200 pycom14g01660
rosa_chinensis	RchiOBHm_Chr6g0286311
rosa_laevigata	RLG00000012581 RLG00000034948 RLG00000034949
rosa_multiflora	Rmu_co8063796.1_g000001 Rmu_co8130532.1_g000001 Rmu_co8356055.1_g000001 Rmu_co8362065.1_g000001 Rmu_co8518233.1_g000001 Rmu_sc0010154.1_g000003 Rmu_sc0024937.1_g000002 Rmu_sc0041504.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042760 Rroxscaffold_7G00169260 Rroxscaffold_7G00182440
rosa_samantha	Rh2CG374800 Rh5BG371500 Rh5BG371800 Rh5BG372200 Rh5BG372300 Rh5BG372500 Rh5CG394100 Rh5CG394300 Rh6CG295300 Rh6CG408800 Rh6DG395700 Rh6DG396100 Rh7DG199400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	461
AatII	GACGTC	1 cut(s)	168
AccBSI	CCGCTC	1 cut(s)	94
AccII	CGCG	3 cut(s)	29, 86, 123
AciI	CCGC	9 cut(s)	14, 76, 84, 94, 123, 222, 225, 262, 453
AcsI	RAATTY	1 cut(s)	286
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	1 cut(s)	117
AfeI	AGCGCT	1 cut(s)	357
AfiI	CCNNNNNNNGG	1 cut(s)	117
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	4 cut(s)	286, 322, 329, 471
AloI	GAACNNNNNNTCC	2 cut(s)	8, 40
AluBI	AGCT	3 cut(s)	175, 219, 332
AluI	AGCT	3 cut(s)	175, 219, 332
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	141
Ama87I	CYCGRG	2 cut(s)	111, 176
Aor51HI	AGCGCT	1 cut(s)	357
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	2 cut(s)	73, 358
ApoI	RAATTY	1 cut(s)	286
AseI	ATTAAT	1 cut(s)	431
Asp700I	GAANNNNTTC	1 cut(s)	23
AspLEI	GCGC	5 cut(s)	73, 88, 123, 261, 358
AspS9I	GGNCC	2 cut(s)	81, 304
AvaI	CYCGRG	2 cut(s)	111, 176
AvaII	GGWCC	1 cut(s)	304
BanII	GRGCYC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	60, 345
BceAI	ACGGC	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	141
BfoI	RGCGCY	2 cut(s)	74, 359
BisI	GCNGC	7 cut(s)	74, 84, 95, 124, 225, 262, 359
BlsI	GCNGC	7 cut(s)	75, 85, 96, 125, 226, 263, 360
Bme18I	GGWCC	1 cut(s)	304
BmeT110I	CYCGRG	2 cut(s)	111, 176
BmgT120I	GGNCC	2 cut(s)	81, 304
BmiI	GGNNCC	1 cut(s)	98
BpmI	CTGGAG	1 cut(s)	110
Bpu10I	CCTNAGC	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	165
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse118I	RCCGGY	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	2 cut(s)	60, 345
Bsh1236I	CGCG	3 cut(s)	29, 86, 123
Bsh1285I	CGRYCG	2 cut(s)	208, 253
BshFI	GGCC	1 cut(s)	83
BsiEI	CGRYCG	2 cut(s)	208, 253
BsiHKAI	GWGCWC	1 cut(s)	177
BsiHKCI	CYCGRG	2 cut(s)	111, 176
BsiSI	CCGG	1 cut(s)	208
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmAI	GTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	83
BsoBI	CYCGRG	2 cut(s)	111, 176
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	4 cut(s)	32, 159, 250, 297
Bsp68I	TCGCGA	1 cut(s)	29
BspACI	CCGC	9 cut(s)	14, 76, 84, 94, 123, 222, 225, 262, 453
BspANI	GGCC	1 cut(s)	83
BspFNI	CGCG	3 cut(s)	29, 86, 123
BspLI	GGNNCC	1 cut(s)	98
BsrBI	CCGCTC	1 cut(s)	94
BsrFI	RCCGGY	1 cut(s)	207
BssAI	RCCGGY	1 cut(s)	207
BssMI	GATC	4 cut(s)	32, 159, 250, 297
BssNI	GRCGYC	1 cut(s)	165
BstACI	GRCGYC	1 cut(s)	165
BstC8I	GCNNGC	2 cut(s)	173, 257
BstDEI	CTNAG	1 cut(s)	183
BstFNI	CGCG	3 cut(s)	29, 86, 123
BstH2I	RGCGCY	2 cut(s)	74, 359
BstHHI	GCGC	5 cut(s)	73, 88, 123, 261, 358
BstKTI	GATC	4 cut(s)	35, 162, 253, 300
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	4 cut(s)	32, 159, 250, 297
BstMCI	CGRYCG	2 cut(s)	208, 253
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 261
BstNSI	RCATGY	1 cut(s)	259
BstUI	CGCG	3 cut(s)	29, 86, 123
BstV1I	GCAGC	2 cut(s)	60, 345
BsuRI	GGCC	1 cut(s)	83
BtuMI	TCGCGA	1 cut(s)	29
Cac8I	GCNNGC	2 cut(s)	173, 257
CfoI	GCGC	5 cut(s)	73, 88, 123, 261, 358
Cfr10I	RCCGGY	1 cut(s)	207
Cfr13I	GGNCC	2 cut(s)	81, 304
CseI	GACGC	1 cut(s)	281
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	2 cut(s)	256, 341
CviJI	RGCY	8 cut(s)	83, 97, 175, 182, 196, 211, 219, 332
CviKI_1	RGCY	8 cut(s)	83, 97, 175, 182, 196, 211, 219, 332
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	4 cut(s)	34, 161, 252, 299
DpnII	GATC	4 cut(s)	32, 159, 250, 297
EciI	GGCGGA	2 cut(s)	29, 211
Ecl136II	GAGCTC	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	304
Eco47III	AGCGCT	1 cut(s)	357
Eco53kI	GAGCTC	1 cut(s)	175
Eco88I	CYCGRG	2 cut(s)	111, 176
EcoICRI	GAGCTC	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	177
FaeI	CATG	2 cut(s)	259, 344
FaiI	YATR	7 cut(s)	155, 257, 342, 389, 407, 409, 461
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	2 cut(s)	255, 340
FauI	CCCGC	1 cut(s)	446
Fnu4HI	GCNGC	7 cut(s)	74, 84, 95, 124, 225, 262, 359
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	7 cut(s)	74, 84, 95, 124, 225, 262, 359
GlaI	GCGC	5 cut(s)	72, 87, 122, 260, 357
GluI	GCNGC	7 cut(s)	74, 84, 95, 124, 225, 262, 359
GsuI	CTGGAG	1 cut(s)	110
HaeII	RGCGCY	2 cut(s)	74, 359
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	208
HgaI	GACGC	1 cut(s)	281
HhaI	GCGC	5 cut(s)	73, 88, 123, 261, 358
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	2 cut(s)	259, 344
Hin6I	GCGC	5 cut(s)	71, 86, 121, 259, 356
HinP1I	GCGC	5 cut(s)	71, 86, 121, 259, 356
HindIII	AAGCTT	1 cut(s)	330
HpaII	CCGG	1 cut(s)	208
Hpy188I	TCNGA	6 cut(s)	134, 146, 294, 308, 315, 347
Hpy188III	TCNNGA	4 cut(s)	28, 47, 100, 203
Hpy99I	CGWCG	5 cut(s)	143, 146, 167, 170, 233
HpyAV	CCTTC	2 cut(s)	316, 477
HpyCH4IV	ACGT	3 cut(s)	21, 138, 165
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 261
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	3 cut(s)	21, 138, 165
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	2 cut(s)	259, 344
HspAI	GCGC	5 cut(s)	71, 86, 121, 259, 356
Kzo9I	GATC	4 cut(s)	32, 159, 250, 297
LmnI	GCTCC	4 cut(s)	91, 102, 187, 224
LpnPI	CCDG	4 cut(s)	32, 74, 221, 397
Lsp1109I	GCAGC	2 cut(s)	60, 345
MaeII	ACGT	3 cut(s)	21, 138, 165
MalI	GATC	4 cut(s)	34, 161, 252, 299
MbiI	CCGCTC	1 cut(s)	94
MboI	GATC	4 cut(s)	32, 159, 250, 297
MboII	GAAGA	2 cut(s)	238, 307
MfeI	CAATTG	1 cut(s)	399
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	6 cut(s)	242, 286, 373, 399, 428, 432
MmeI	TCCRAC	2 cut(s)	124, 325
MnlI	CCTC	7 cut(s)	43, 47, 58, 61, 172, 295, 388
MroXI	GAANNNNTTC	1 cut(s)	23
MseI	TTAA	2 cut(s)	384, 431
MspI	CCGG	1 cut(s)	208
MunI	CAATTG	1 cut(s)	399
MvnI	CGCG	3 cut(s)	29, 86, 123
MwoI	GCNNNNNNNGC	2 cut(s)	94, 261
NdeII	GATC	4 cut(s)	32, 159, 250, 297
NlaIII	CATG	2 cut(s)	259, 344
NlaIV	GGNNCC	1 cut(s)	98
NruI	TCGCGA	1 cut(s)	29
NspI	RCATGY	1 cut(s)	259
PaeI	GCATGC	1 cut(s)	259
PaeR7I	CTCGAG	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	2 cut(s)	168, 174
PdmI	GAANNNNTTC	1 cut(s)	23
PkrI	GCNGC	7 cut(s)	75, 85, 96, 125, 226, 263, 360
Ple19I	CGATCG	1 cut(s)	253
PshBI	ATTAAT	1 cut(s)	431
PsiI	TTATAA	1 cut(s)	461
Psp124BI	GAGCTC	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	98
PspPI	GGNCC	2 cut(s)	81, 304
PspXI	VCTCGAGB	1 cut(s)	176
PvuI	CGATCG	1 cut(s)	253
RruI	TCGCGA	1 cut(s)	29
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	384, 431
SatI	GCNGC	7 cut(s)	74, 84, 95, 124, 225, 262, 359
Sau3AI	GATC	4 cut(s)	32, 159, 250, 297
Sau96I	GGNCC	2 cut(s)	81, 304
SduI	GDGCHC	1 cut(s)	177
Sfr274I	CTCGAG	1 cut(s)	176
SinI	GGWCC	1 cut(s)	304
SlaI	CTCGAG	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SphI	GCATGC	1 cut(s)	259
Sse9I	AATT	6 cut(s)	242, 286, 373, 399, 428, 432
SsiI	CCGC	9 cut(s)	14, 76, 84, 94, 123, 222, 225, 262, 453
SstI	GAGCTC	1 cut(s)	177
TaiI	ACGT	3 cut(s)	24, 141, 168
TaqI	TCGA	5 cut(s)	162, 177, 204, 249, 300
TasI	AATT	6 cut(s)	242, 286, 373, 399, 428, 432
TauI	GCSGC	5 cut(s)	86, 97, 126, 227, 264
Tru1I	TTAA	2 cut(s)	384, 431
Tru9I	TTAA	2 cut(s)	384, 431
TseI	GCWGC	2 cut(s)	73, 358
TspGWI	ACGGA	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	304
VspI	ATTAAT	1 cut(s)	431
XapI	RAATTY	1 cut(s)	286
XceI	RCATGY	1 cut(s)	259
XhoI	CTCGAG	1 cut(s)	176
XmnI	GAANNNNTTC	1 cut(s)	23
ZraI	GACGTC	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.