Rh6DG395700
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0003940
Physical Location & Seq
Forward (+)
58684434 .. 58688652
4219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG395700.1

Sequence Viewer

Length: 795 bp
ATGGAGAGTAGTAGTGGAGATGTATATAGAGTGAGCAGTGCTCGTCTGAGCAGTTCAAACATTTGGAGGAACAGTACCATGGATGTTTTCTCCAAGTCTTCACACGATGAAGACGATGAAGAAGCGCTGAAATGGGCCGCCATTGAAAAACTGCCAACTTACTTGCGTATAAGGAGAGGCATTCTCACCGAGGAAGAAGGCGAAGCGAGAGAGATTGACATCAAGAATCTTGGATTGTTGGAAAGGAAGAATGTGTTGGAGAGGCTGGTGAAAGTTGCAGATGAAGATAATGAGAGGTTCTTGATGAAGCTCAAGGACCGGATTGATAGGGTTGGACTTGATATTCCGACGATTGAAGTCCGGTTTGAGCATTTGAATGTTGAAGCAGAAGCTTATGTAGGAGGGAGGGCGCTGCCTACACTCTATAACTTTTCTGTTAATATCTTGGAGGGATTCCTGAGTTTCTGTCGCATTATTCCAACTAGAAAGCATCCATTACCAATCCTTGATGATGTTAGTGGAATTATCAAACCAAAAAGAATGACACTGCTTTTAGGCCCCCCAAACTCTGGAAAAACCACATTGCTTTTGGCTTTGGCTGGTAAACTTGCTAAAGATCTAAAGGCTGCATCATTAGAAGGGCAGGAGGCCAATGTAGTTACAGATTACATACTCAAGGCTGTACTCTCCAAAGAAGCTTTAGCTGATAAAAACGCTGCTAGAGCTGGAGGAAACATAGAGCTATCATCAAGAGGAAAGAACTCTTCAGGTGGCCGTGGCTCCAAAAGCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

264

Amino Acids

29.13

Weight (kDa)

7.77

Isoelectric Point (pI)

35.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 94 - 144 6.6e-08 ABC-transporter N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 569
AciI CCGC 1 cut(s) 138
AcoI YGGCCR 1 cut(s) 772
AcuI CTGAAG 1 cut(s) 750
AfaI GTAC 2 cut(s) 76, 684
AfeI AGCGCT 1 cut(s) 126
AfiI CCNNNNNNNGG 1 cut(s) 569
AgsI TTSAA 5 cut(s) 57, 146, 356, 376, 383
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AluBI AGCT 7 cut(s) 310, 392, 698, 704, 725, 742, 789
AluI AGCT 7 cut(s) 310, 392, 698, 704, 725, 742, 789
Alw21I GWGCWC 1 cut(s) 43
Aor51HI AGCGCT 1 cut(s) 126
AoxI GGCC 4 cut(s) 135, 556, 648, 772
ApeKI GCWGC 3 cut(s) 412, 626, 716
AspLEI GCGC 2 cut(s) 127, 412
AspS9I GGNCC 3 cut(s) 135, 316, 557
AsuHPI GGTGA 2 cut(s) 178, 280
AvaII GGWCC 1 cut(s) 316
BbsI GAAGAC 2 cut(s) 90, 117
Bbv12I GWGCWC 1 cut(s) 43
BbvI GCAGC 3 cut(s) 399, 613, 703
BceAI ACGGC 1 cut(s) 759
BfaI CTAG 2 cut(s) 483, 720
BfoI RGCGCY 2 cut(s) 128, 413
BglII AGATCT 1 cut(s) 616
BisI GCNGC 4 cut(s) 138, 413, 627, 717
BlsI GCNGC 4 cut(s) 139, 414, 628, 718
Bme18I GGWCC 1 cut(s) 316
BmgT120I GGNCC 3 cut(s) 135, 316, 557
BmiI GGNNCC 2 cut(s) 559, 781
BmsI GCATC 2 cut(s) 499, 638
BpiI GAAGAC 2 cut(s) 90, 117
BplI GAGNNNNNCTC 4 cut(s) 25, 57, 168, 200
BpmI CTGGAG 1 cut(s) 747
BpuEI CTTGAG 2 cut(s) 296, 659
BsaBI GATNNNNATC 1 cut(s) 218
BsaJI CCNNGG 3 cut(s) 78, 189, 775
BsaWI WCCGGW 2 cut(s) 318, 360
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 1 cut(s) 569
Bse3DI GCAATG 1 cut(s) 581
Bse8I GATNNNNATC 1 cut(s) 218
BseDI CCNNGG 3 cut(s) 78, 189, 775
BseGI GGATG 2 cut(s) 88, 490
BseJI GATNNNNATC 1 cut(s) 218
BseLI CCNNNNNNNGG 1 cut(s) 569
BseMI GCAATG 1 cut(s) 581
BseMII CTCAG 2 cut(s) 38, 449
BseXI GCAGC 3 cut(s) 399, 613, 703
BshFI GGCC 4 cut(s) 137, 558, 650, 774
BsiHKAI GWGCWC 1 cut(s) 43
BsiSI CCGG 2 cut(s) 319, 361
BslI CCNNNNNNNGG 1 cut(s) 569
BsmI GAATGC 1 cut(s) 180
BsnI GGCC 4 cut(s) 137, 558, 650, 774
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 1 cut(s) 616
Bsp19I CCATGG 1 cut(s) 78
BspACI CCGC 1 cut(s) 138
BspANI GGCC 4 cut(s) 137, 558, 650, 774
BspCNI CTCAG 2 cut(s) 39, 450
BspLI GGNNCC 2 cut(s) 559, 781
BsrDI GCAATG 1 cut(s) 581
BssECI CCNNGG 3 cut(s) 78, 189, 775
BssMI GATC 1 cut(s) 616
BssT1I CCWWGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 74
Bst6I CTCTTC 1 cut(s) 769
BstDEI CTNAG 2 cut(s) 47, 458
BstDSI CCRYGG 2 cut(s) 78, 775
BstF5I GGATG 2 cut(s) 88, 490
BstH2I RGCGCY 2 cut(s) 128, 413
BstHHI GCGC 2 cut(s) 127, 412
BstKTI GATC 1 cut(s) 619
BstMBI GATC 1 cut(s) 616
BstMWI GCNNNNNNNGC 2 cut(s) 722, 786
BstV1I GCAGC 3 cut(s) 399, 613, 703
BstV2I GAAGAC 2 cut(s) 90, 117
BstX2I RGATCY 1 cut(s) 616
BstYI RGATCY 1 cut(s) 616
BsuRI GGCC 4 cut(s) 137, 558, 650, 774
BtgI CCRYGG 2 cut(s) 78, 775
BtsCI GGATG 2 cut(s) 88, 490
BtsI GCAGTG 2 cut(s) 43, 545
BtsIMutI CAGTG 2 cut(s) 43, 545
CfoI GCGC 2 cut(s) 127, 412
Cfr13I GGNCC 3 cut(s) 135, 316, 557
Csp6I GTAC 2 cut(s) 75, 683
CviAII CATG 1 cut(s) 79
CviQI GTAC 2 cut(s) 75, 683
DdeI CTNAG 2 cut(s) 47, 458
DpnI GATC 1 cut(s) 618
DpnII GATC 1 cut(s) 616
EaeI YGGCCR 1 cut(s) 772
Eam1104I CTCTTC 1 cut(s) 769
EarI CTCTTC 1 cut(s) 769
Eco130I CCWWGG 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 316
Eco47III AGCGCT 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 750
EcoO109I RGGNCCY 1 cut(s) 557
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 1 cut(s) 82
FaiI YATR 8 cut(s) 25, 27, 80, 170, 396, 426, 671, 737
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 4 cut(s) 138, 413, 627, 717
FokI GGATG 2 cut(s) 95, 477
Fsp4HI GCNGC 4 cut(s) 138, 413, 627, 717
FspBI CTAG 2 cut(s) 483, 720
GlaI GCGC 2 cut(s) 126, 411
GluI GCNGC 4 cut(s) 138, 413, 627, 717
GsuI CTGGAG 1 cut(s) 747
HaeII RGCGCY 2 cut(s) 128, 413
HaeIII GGCC 4 cut(s) 137, 558, 650, 774
HapII CCGG 2 cut(s) 319, 361
HhaI GCGC 2 cut(s) 127, 412
Hin1II CATG 1 cut(s) 82
Hin6I GCGC 2 cut(s) 125, 410
HinP1I GCGC 2 cut(s) 125, 410
HindIII AAGCTT 2 cut(s) 390, 696
HinfI GANTC 2 cut(s) 226, 453
HpaII CCGG 2 cut(s) 319, 361
HphI GGTGA 2 cut(s) 178, 280
Hpy166II GTNNAC 1 cut(s) 605
Hpy188I TCNGA 2 cut(s) 48, 348
Hpy188III TCNNGA 5 cut(s) 223, 301, 457, 570, 750
Hpy8I GTNNAC 1 cut(s) 605
Hpy99I CGWCG 1 cut(s) 352
HpyAV CCTTC 2 cut(s) 191, 632
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4V TGCA 2 cut(s) 278, 629
HpyF10VI GCNNNNNNNGC 2 cut(s) 722, 786
HpyF3I CTNAG 2 cut(s) 47, 458
Hsp92II CATG 1 cut(s) 82
HspAI GCGC 2 cut(s) 125, 410
Kzo9I GATC 1 cut(s) 616
LmnI GCTCC 2 cut(s) 785, 794
LpnPI CCDG 9 cut(s) 251, 332, 374, 470, 555, 585, 629, 711, 753
Lsp1109I GCAGC 3 cut(s) 399, 613, 703
LweI GCATC 2 cut(s) 499, 638
MaeI CTAG 2 cut(s) 483, 720
MaeIII GTNAC 1 cut(s) 658
MalI GATC 1 cut(s) 618
MboI GATC 1 cut(s) 616
MboII GAAGA 7 cut(s) 90, 122, 131, 206, 259, 296, 756
MflI RGATCY 1 cut(s) 616
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 1 cut(s) 522
MmeI TCCRAC 5 cut(s) 219, 237, 313, 371, 503
MseI TTAA 1 cut(s) 438
MslI CAYNNNNRTG 1 cut(s) 375
MspI CCGG 2 cut(s) 319, 361
Mva1269I GAATGC 1 cut(s) 180
MwoI GCNNNNNNNGC 2 cut(s) 722, 786
NcoI CCATGG 1 cut(s) 78
NdeII GATC 1 cut(s) 616
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 2 cut(s) 559, 781
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PctI GAATGC 1 cut(s) 180
PfeI GAWTC 2 cut(s) 226, 453
PflMI CCANNNNNTGG 1 cut(s) 569
PkrI GCNGC 4 cut(s) 139, 414, 628, 718
PspN4I GGNNCC 2 cut(s) 559, 781
PspPI GGNCC 3 cut(s) 135, 316, 557
PsuI RGATCY 1 cut(s) 616
RsaI GTAC 2 cut(s) 76, 684
RsaNI GTAC 2 cut(s) 75, 683
RseI CAYNNNNRTG 1 cut(s) 375
SaqAI TTAA 1 cut(s) 438
SatI GCNGC 4 cut(s) 138, 413, 627, 717
Sau3AI GATC 1 cut(s) 616
Sau96I GGNCC 3 cut(s) 135, 316, 557
SduI GDGCHC 1 cut(s) 43
SetI ASST 9 cut(s) 299, 312, 394, 700, 706, 727, 744, 772, 791
SfaNI GCATC 2 cut(s) 499, 638
SinI GGWCC 1 cut(s) 316
SmiMI CAYNNNNRTG 1 cut(s) 375
SmlI CTYRAG 2 cut(s) 311, 674
SmoI CTYRAG 2 cut(s) 311, 674
Sse9I AATT 1 cut(s) 522
SsiI CCGC 1 cut(s) 138
SspMI CTAG 2 cut(s) 483, 720
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 1 cut(s) 74
TasI AATT 1 cut(s) 522
TatI WGTACW 1 cut(s) 682
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 2 cut(s) 226, 453
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 2 cut(s) 43, 552
TseI GCWGC 3 cut(s) 412, 626, 716
TspDTI ATGAA 4 cut(s) 123, 132, 297, 320
TspRI CASTG 2 cut(s) 43, 552
Van91I CCANNNNNTGG 1 cut(s) 569
VpaK11BI GGWCC 1 cut(s) 316
XcmI CCANNNNNNNNNTGG 1 cut(s) 586
XspI CTAG 2 cut(s) 483, 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.