Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003940

Physical Location & Seq

Genomic Coordinates Forward (+)

51974098 .. 51989149

Gene Structure 15052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG394300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2229 bp

ATGGCGGCGGCAGCAATGGCCGGAGAAGACTTAATAAGGCAGTCGAGCAGCCGGAGGAGCTCGCTGTCGAGCAGCCGGAGGAGCTGGCGGTCGACTAGTGTCCGAGAAATGTGGAACGCGCCGGACGTGTTCCAACGGAGCGTCCGGCAGCCGGCGCTGGACGAGGAGGAGGAGCTCAAGTGGGCCGCCATAGAGCGGTTGCCGACTTATGATAGGATGAGGAGAGGCATGTTGAGGAATGTGATGAGCAATGGAAGGGTTGTGGCTGAAGAAGTTGACGTTGCGCATCTTGGGGATCAAGATAAGAAGCAGTTGATGGAGAGCATACTCAAGGTTATTGAGGAGGATAATGAAAAGTTCTTGAAGAAGCTCAGGGCCAGAAATGACAGGGTTGGCATCGATATTCCTAAAGTTGAGGTTAGATTCCAGAATTTATCAATAGATGGAGATGCGTTTGTAGGCACCAGAGCACTTCCAACTCTATGGAATTCCACCTTGAACACAATAGAGGGACTGCTGGGACTTGTTGGTCTTTCACCATCCAAGAAAAGAGTTGTTAAGATACTACAAGATGTTAGTGGTATTGTCAAACCAGCAAGGATGACACTTCTTCTTGGACCTCCGGGATCAGGAAAAACAACATTGCTAAAAGCACTTTCTGGCAAACTAGATAGGGATCTTAGGTTATTGGCTTTCATTGGTATAAGTCAGATGGCACTCTCCCTCTTCCGTTTCATTGCAGCGCTTGGAAGATCAGATGTGGTTGCTAACACAATTGGTTCATTTACACTGTTATTGCTCCCCAGCAACACCTCCACTCAGCCTACTCTCGGAAAAGCCCTTCTCAGAGAAAGAGGCCTGTACACTGAAGAATATTGGTATTGGATTTGTGTTGGAGCGCTTTTTGGGTTTTCTTTTCTTTTCAATGGGCTGTTCATTGCAGCACTCACCTACTTGAACCCCCTTGGCGACAACAAAGGTCTAATTCTGGAGGATGATTCTGAAACCAAGAGGAGGCCACAATTGACAGAAGGTATTGATATGCAAGTGAGAAATGCAGAAGGAACTTCAAATGGACAAGCCAAGCGAGGAATGGTGTTGCCCTTCCAGCCCCTTTCACTCGCTTTCAGCCATGTGAACTACTATGTGGATATGCCTGCGGAGATGAAGACCCAAGGTATTGAAGAGAACCGACTGCAACTACTAAGAGATGTTAATGGGGCATTCAGGCCAGGAGTTCTCACTGCATTAGTTGGTGTTAGTGGTGCTGGAAAAACTACTTTGATGGATGTCTTAGCTGGAAGAAAGACTGGTGGATATATAGAAGGAAGTATTAGTATCTCAGGTTATCCAAAAAACCAAGCCACATTTGCTCGGGTTAGCGGTTATTGTGAACAGAACGACATTCATTCACCATATGTTACTGTTTATGAATCTCTGCTATACTCTGCCTGGCTACGTCTTTCTAAGGATGTCAACAAAAGCAAACGAAAGATGTTTGTTGATGAAGTTATGGACTTGGTGGAGCTTAACCCCTTGAGGAATGCTTTAGTTGGACTTCCAGGAGTTGATGGACTTTCAACTGAACAAAGAAAGAGGCTGACCATTGCTGTAGAATTGGTTGCAAATCCTTCCATTATCTTTATGGATGAGCCAACATCAGGGCTTGATGCTAGAGCAGCTGCCATTGTTATGCGTACTGTAAGAAACACCGTCGATACTGGACGAACTGTTGTCTGCACCATTCACCAACCTAGCATTGACATTTTCGAAGCTTTTGATGAGCTTTTCTTAATGAAAAGAGGAGGACAAGTGATTTATGCTGGACCTCTTGGTGATCGGTCTCACAAACTTGTTGAATATTTTGAGGCCATTCCAGGAGTTCCCAAGATAAAAGACGGCTACAACCCTGCTACATGGATGTTAGAGAGTTCTCACACATATGATTTGTCGACAGAGATAAACAACAAGATATTATTAACCTTCTGGGAGCAACCTATTCTGCTGTTCTTTTCCTTGGAGCGGGAAATGCTTCTGCTGTGCAATCTGTGGTTGCGATTGAGAGAACAGTTTTCTACCGAGAAAGAGCAGCAGGAATGTATTCAGAGTTGCCTTATGCATTTGCTCAGAACCACCAATCCATTGCACGAAGCCATCACATTCGTTATATTCTCGTCAGATGGAATGGCGAGATTTCTGACCAAAGAATTACCTGGCAAAAAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

742

Amino Acids

83.0

Weight (kDa)

8.63

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_trans_N	PF14510	115 - 163	4.2e-09	ABC-transporter N-terminal
ABC_tran	PF00005	189 - 224	1e-05	ABC transporter
PDR_assoc	PF08370	271 - 328	9.1e-26	Plant PDR ABC transporter associated
ABC_tran	PF00005	402 - 554	3.1e-20	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003940)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29821 FvH4_c11g00010
malus_domestica	MD02G1041000.v1.1 MD08G1141000.v1.1
pyrus_communis	pycom05g17200 pycom14g01660
rosa_chinensis	RchiOBHm_Chr6g0286311
rosa_laevigata	RLG00000012581 RLG00000034948 RLG00000034949
rosa_multiflora	Rmu_co8063796.1_g000001 Rmu_co8130532.1_g000001 Rmu_co8356055.1_g000001 Rmu_co8362065.1_g000001 Rmu_co8518233.1_g000001 Rmu_sc0010154.1_g000003 Rmu_sc0024937.1_g000002 Rmu_sc0041504.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042760 Rroxscaffold_7G00169260 Rroxscaffold_7G00182440
rosa_samantha	Rh2CG374800 Rh5BG371500 Rh5BG371800 Rh5BG372200 Rh5BG372300 Rh5BG372500 Rh5CG394100 Rh5CG394300 Rh6CG295300 Rh6CG408800 Rh6DG395700 Rh6DG396100 Rh7DG199400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	528
Acc16I	TGCGCA	1 cut(s)	285
AccB1I	GGYRCC	1 cut(s)	461
AccBSI	CCGCTC	2 cut(s)	196, 2023
AccI	GTMKAC	2 cut(s)	92, 1952
AccII	CGCG	1 cut(s)	119
AciI	CCGC	8 cut(s)	5, 8, 88, 186, 196, 1160, 1383, 2023
AclWI	GGATC	3 cut(s)	303, 634, 684
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	2 cut(s)	430, 487
AcuI	CTGAAG	2 cut(s)	288, 888
AfaI	GTAC	2 cut(s)	863, 1699
AfeI	AGCGCT	2 cut(s)	744, 900
AfiI	CCNNNNNNNGG	7 cut(s)	151, 195, 629, 830, 1014, 1661, 2022
AflIII	ACRYGT	1 cut(s)	126
AgsI	TTSAA	8 cut(s)	364, 499, 925, 958, 1071, 1184, 1581, 1859
AhlI	ACTAGT	1 cut(s)	95
AjiI	CACGTC	1 cut(s)	127
AjnI	CCWGG	5 cut(s)	1231, 1451, 1561, 1876, 2212
AloI	GAACNNNNNNTCC	2 cut(s)	2122, 2154
AluBI	AGCT	9 cut(s)	60, 84, 175, 370, 1298, 1528, 1682, 1775, 1786
AluI	AGCT	9 cut(s)	60, 84, 175, 370, 1298, 1528, 1682, 1775, 1786
Alw21I	GWGCWC	3 cut(s)	62, 177, 472
Alw26I	GTCTC	1 cut(s)	1848
AlwI	GGATC	3 cut(s)	303, 634, 684
Ama87I	CYCGRG	1 cut(s)	1374
Aor51HI	AGCGCT	2 cut(s)	744, 900
AoxI	GGCC	7 cut(s)	18, 183, 375, 856, 1016, 1229, 1869
ApeKI	GCWGC	9 cut(s)	11, 48, 72, 148, 740, 941, 1679, 1682, 2089
ApoI	RAATTY	2 cut(s)	430, 487
Asp700I	GAANNNNTTC	2 cut(s)	2031, 2100
AspLEI	GCGC	5 cut(s)	121, 157, 286, 745, 901
AspS9I	GGNCC	4 cut(s)	183, 375, 617, 1826
AsuC2I	CCSGG	1 cut(s)	624
AsuHPI	GGTGA	5 cut(s)	528, 940, 1404, 1739, 1847
AsuII	TTCGAA	1 cut(s)	1770
AvaI	CYCGRG	1 cut(s)	1374
AvaII	GGWCC	2 cut(s)	617, 1826
BanI	GGYRCC	1 cut(s)	461
BanII	GRGCYC	2 cut(s)	62, 177
BbsI	GAAGAC	2 cut(s)	33, 1175
Bbv12I	GWGCWC	3 cut(s)	62, 177, 472
BbvI	GCAGC	9 cut(s)	23, 60, 84, 160, 752, 953, 1669, 1691, 2101
BccI	CCATC	8 cut(s)	310, 437, 547, 706, 1279, 1565, 2162, 2174
BceAI	ACGGC	1 cut(s)	1915
BciT130I	CCWGG	5 cut(s)	1233, 1453, 1563, 1878, 2214
BcnI	CCSGG	1 cut(s)	624
BcoDI	GTCTC	1 cut(s)	1848
BcuI	ACTAGT	1 cut(s)	95
BfaI	CTAG	4 cut(s)	96, 668, 1674, 1755
BfmI	CTRYAG	1 cut(s)	1611
BfoI	RGCGCY	3 cut(s)	158, 746, 902
Bme1390I	CCNGG	6 cut(s)	624, 1233, 1453, 1563, 1878, 2214
Bme18I	GGWCC	2 cut(s)	617, 1826
BmeT110I	CYCGRG	1 cut(s)	1374
BmgBI	CACGTC	1 cut(s)	127
BmgT120I	GGNCC	4 cut(s)	183, 375, 617, 1826
BmiI	GGNNCC	1 cut(s)	463
BmrFI	CCNGG	6 cut(s)	624, 1233, 1453, 1563, 1878, 2214
BmsI	GCATC	4 cut(s)	295, 405, 439, 1660
BoxI	GACNNNNGTC	1 cut(s)	98
BpiI	GAAGAC	2 cut(s)	33, 1175
BpmI	CTGGAG	1 cut(s)	1010
Bpu10I	CCTNAGC	1 cut(s)	371
Bpu14I	TTCGAA	1 cut(s)	1770
BpuEI	CTTGAG	3 cut(s)	161, 314, 1558
BpuMI	CCSGG	1 cut(s)	624
Bsa29I	ATCGAT	1 cut(s)	399
BsaBI	GATNNNNATC	1 cut(s)	675
BsaI	GGTCTC	1 cut(s)	1848
BsaJI	CCNNGG	3 cut(s)	964, 1174, 2016
BsaXI	ACNNNNNCTCC	4 cut(s)	164, 194, 1797, 1827
Bsc4I	CCNNNNNNNGG	7 cut(s)	151, 195, 629, 830, 1014, 1661, 2022
Bse118I	RCCGGY	1 cut(s)	151
Bse1I	ACTGG	2 cut(s)	1315, 1726
Bse3DI	GCAATG	7 cut(s)	21, 256, 641, 735, 936, 1605, 2141
Bse8I	GATNNNNATC	1 cut(s)	675
BseBI	CCWGG	5 cut(s)	1233, 1453, 1563, 1878, 2214
BseCI	ATCGAT	1 cut(s)	399
BseDI	CCNNGG	3 cut(s)	964, 1174, 2016
BseGI	GGATG	8 cut(s)	222, 539, 606, 1000, 1294, 1477, 1654, 1926
BseJI	GATNNNNATC	1 cut(s)	675
BseLI	CCNNNNNNNGG	7 cut(s)	151, 195, 629, 830, 1014, 1661, 2022
BseMI	GCAATG	7 cut(s)	21, 256, 641, 735, 936, 1605, 2141
BseMII	CTCAG	5 cut(s)	385, 833, 859, 1356, 2140
BseNI	ACTGG	2 cut(s)	1315, 1726
BseRI	GAGGAG	9 cut(s)	70, 94, 179, 182, 185, 235, 356, 1027, 1818
BseXI	GCAGC	9 cut(s)	23, 60, 84, 160, 752, 953, 1669, 1691, 2101
BseYI	CCCAGC	2 cut(s)	517, 803
BsgI	GTGCAG	1 cut(s)	1723
Bsh1236I	CGCG	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	92
BshFI	GGCC	7 cut(s)	20, 185, 377, 858, 1018, 1231, 1871
BshNI	GGYRCC	1 cut(s)	461
BshVI	ATCGAT	1 cut(s)	399
BsiEI	CGRYCG	1 cut(s)	92
BsiHKAI	GWGCWC	3 cut(s)	62, 177, 472
BsiHKCI	CYCGRG	1 cut(s)	1374
BsiSI	CCGG	7 cut(s)	21, 52, 76, 122, 145, 152, 623
BslFI	GGGAC	2 cut(s)	525, 534
BslI	CCNNNNNNNGG	7 cut(s)	151, 195, 629, 830, 1014, 1661, 2022
BsmAI	GTCTC	1 cut(s)	1848
BsmFI	GGGAC	2 cut(s)	525, 534
BsmI	GAATGC	2 cut(s)	1223, 1549
BsnI	GGCC	7 cut(s)	20, 185, 377, 858, 1018, 1231, 1871
Bso31I	GGTCTC	1 cut(s)	1848
BsoBI	CYCGRG	1 cut(s)	1374
Bsp119I	TTCGAA	1 cut(s)	1770
Bsp1286I	GDGCHC	3 cut(s)	62, 177, 472
Bsp1407I	TGTACA	1 cut(s)	861
Bsp143I	GATC	5 cut(s)	295, 626, 676, 752, 1837
BspACI	CCGC	8 cut(s)	5, 8, 88, 186, 196, 1160, 1383, 2023
BspANI	GGCC	7 cut(s)	20, 185, 377, 858, 1018, 1231, 1871
BspCNI	CTCAG	5 cut(s)	384, 832, 858, 1355, 2139
BspDI	ATCGAT	1 cut(s)	399
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	1 cut(s)	463
BspPI	GGATC	3 cut(s)	303, 634, 684
BspT104I	TTCGAA	1 cut(s)	1770
BspT107I	GGYRCC	1 cut(s)	461
BspTNI	GGTCTC	1 cut(s)	1848
BsrBI	CCGCTC	2 cut(s)	196, 2023
BsrDI	GCAATG	7 cut(s)	21, 256, 641, 735, 936, 1605, 2141
BsrFI	RCCGGY	1 cut(s)	151
BsrGI	TGTACA	1 cut(s)	861
BsrI	ACTGG	2 cut(s)	1315, 1726
BssAI	RCCGGY	1 cut(s)	151
BssECI	CCNNGG	3 cut(s)	964, 1174, 2016
BssMI	GATC	5 cut(s)	295, 626, 676, 752, 1837
BssT1I	CCWWGG	3 cut(s)	964, 1174, 2016
Bst2UI	CCWGG	5 cut(s)	1233, 1453, 1563, 1878, 2214
Bst4CI	ACNGT	6 cut(s)	792, 1426, 1702, 1714, 1732, 2070
Bst6I	CTCTTC	2 cut(s)	731, 1179
BstAUI	TGTACA	1 cut(s)	861
BstBI	TTCGAA	1 cut(s)	1770
BstC8I	GCNNGC	4 cut(s)	62, 86, 153, 1158
BstDEI	CTNAG	9 cut(s)	371, 680, 819, 845, 1205, 1294, 1342, 1467, 2126
BstF5I	GGATG	8 cut(s)	222, 539, 606, 1000, 1294, 1477, 1654, 1926
BstFNI	CGCG	1 cut(s)	119
BstH2I	RGCGCY	3 cut(s)	158, 746, 902
BstHHI	GCGC	5 cut(s)	121, 157, 286, 745, 901
BstKTI	GATC	5 cut(s)	298, 629, 679, 755, 1840
BstMAI	GTCTC	1 cut(s)	1848
BstMBI	GATC	5 cut(s)	295, 626, 676, 752, 1837
BstMCI	CGRYCG	1 cut(s)	92
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 17, 57, 81, 154, 1108, 1370, 1679, 2029
BstNI	CCWGG	5 cut(s)	1233, 1453, 1563, 1878, 2214
BstNSI	RCATGY	1 cut(s)	232
BstPAI	GACNNNNGTC	1 cut(s)	98
BstSCI	CCNGG	6 cut(s)	622, 1231, 1451, 1561, 1876, 2212
BstSFI	CTRYAG	1 cut(s)	1611
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	9 cut(s)	23, 60, 84, 160, 752, 953, 1669, 1691, 2101
BstV2I	GAAGAC	2 cut(s)	33, 1175
BstX2I	RGATCY	1 cut(s)	676
BstXI	CCANNNNNNTGG	1 cut(s)	483
BstYI	RGATCY	1 cut(s)	676
Bsu15I	ATCGAT	1 cut(s)	399
BsuRI	GGCC	7 cut(s)	20, 185, 377, 858, 1018, 1231, 1871
BsuTUI	ATCGAT	1 cut(s)	399
BtrI	CACGTC	1 cut(s)	127
BtsCI	GGATG	8 cut(s)	222, 539, 606, 1000, 1294, 1477, 1654, 1926
BtsI	GCAGTG	1 cut(s)	1242
BtsIMutI	CAGTG	3 cut(s)	788, 864, 1242
Cac8I	GCNNGC	4 cut(s)	62, 86, 153, 1158
CfoI	GCGC	5 cut(s)	121, 157, 286, 745, 901
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	4 cut(s)	183, 375, 617, 1826
ClaI	ATCGAT	1 cut(s)	399
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	862, 1698
CviAII	CATG	3 cut(s)	229, 1133, 1917
CviQI	GTAC	2 cut(s)	862, 1698
DdeI	CTNAG	9 cut(s)	371, 680, 819, 845, 1205, 1294, 1342, 1467, 2126
DpnI	GATC	5 cut(s)	297, 628, 678, 754, 1839
DpnII	GATC	5 cut(s)	295, 626, 676, 752, 1837
DrdI	GACNNNNNNGTC	1 cut(s)	528
DseDI	GACNNNNNNGTC	1 cut(s)	528
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	2 cut(s)	731, 1179
EarI	CTCTTC	2 cut(s)	731, 1179
Ecl136II	GAGCTC	2 cut(s)	60, 175
Eco130I	CCWWGG	3 cut(s)	964, 1174, 2016
Eco147I	AGGCCT	1 cut(s)	858
Eco24I	GRGCYC	2 cut(s)	62, 177
Eco31I	GGTCTC	1 cut(s)	1848
Eco47I	GGWCC	2 cut(s)	617, 1826
Eco47III	AGCGCT	2 cut(s)	744, 900
Eco53kI	GAGCTC	2 cut(s)	60, 175
Eco57I	CTGAAG	2 cut(s)	288, 888
Eco88I	CYCGRG	1 cut(s)	1374
EcoICRI	GAGCTC	2 cut(s)	60, 175
EcoRI	GAATTC	1 cut(s)	487
EcoRII	CCWGG	5 cut(s)	1231, 1451, 1561, 1876, 2212
EcoT14I	CCWWGG	3 cut(s)	964, 1174, 2016
EcoT22I	ATGCAT	1 cut(s)	2121
EcoT38I	GRGCYC	2 cut(s)	62, 177
ErhI	CCWWGG	3 cut(s)	964, 1174, 2016
FaeI	CATG	3 cut(s)	232, 1136, 1920
FaqI	GGGAC	2 cut(s)	525, 534
FatI	CATG	3 cut(s)	228, 1132, 1916
FauI	CCCGC	1 cut(s)	2016
FauNDI	CATATG	2 cut(s)	1417, 1942
FblI	GTMKAC	2 cut(s)	92, 1952
FokI	GGATG	8 cut(s)	229, 526, 613, 1007, 1301, 1484, 1661, 1933
FriOI	GRGCYC	2 cut(s)	62, 177
FspBI	CTAG	4 cut(s)	96, 668, 1674, 1755
FspI	TGCGCA	1 cut(s)	285
GlaI	GCGC	5 cut(s)	120, 156, 285, 744, 900
GsaI	CCCAGC	2 cut(s)	521, 807
GsuI	CTGGAG	1 cut(s)	1010
HaeII	RGCGCY	3 cut(s)	158, 746, 902
HaeIII	GGCC	7 cut(s)	20, 185, 377, 858, 1018, 1231, 1871
HapII	CCGG	7 cut(s)	21, 52, 76, 122, 145, 152, 623
HgaI	GACGC	1 cut(s)	130
HhaI	GCGC	5 cut(s)	121, 157, 286, 745, 901
Hin1II	CATG	3 cut(s)	232, 1136, 1920
Hin6I	GCGC	5 cut(s)	119, 155, 284, 743, 899
HinP1I	GCGC	5 cut(s)	119, 155, 284, 743, 899
HincII	GTYRAC	4 cut(s)	93, 277, 1477, 1953
HindII	GTYRAC	4 cut(s)	93, 277, 1477, 1953
HindIII	AAGCTT	1 cut(s)	1773
HinfI	GANTC	3 cut(s)	423, 998, 1433
HpaII	CCGG	7 cut(s)	21, 52, 76, 122, 145, 152, 623
HphI	GGTGA	5 cut(s)	528, 940, 1404, 1739, 1847
Hpy166II	GTNNAC	7 cut(s)	93, 277, 864, 1138, 1394, 1477, 1953
Hpy188III	TCNNGA	5 cut(s)	299, 361, 427, 630, 989
Hpy8I	GTNNAC	7 cut(s)	93, 277, 864, 1138, 1394, 1477, 1953
Hpy99I	CGWCG	1 cut(s)	1718
HpyAV	CCTTC	8 cut(s)	249, 851, 1025, 1055, 1114, 1319, 1641, 1993
HpyCH4III	ACNGT	6 cut(s)	792, 1426, 1702, 1714, 1732, 2070
HpyCH4IV	ACGT	3 cut(s)	126, 279, 1459
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 17, 57, 81, 154, 1108, 1370, 1679, 2029
HpyF3I	CTNAG	9 cut(s)	371, 680, 819, 845, 1205, 1294, 1342, 1467, 2126
HpySE526I	ACGT	3 cut(s)	126, 279, 1459
Hsp92II	CATG	3 cut(s)	232, 1136, 1920
HspAI	GCGC	5 cut(s)	119, 155, 284, 743, 899
KroI	GCCGGC	1 cut(s)	151
KroNI	GCCGGC	1 cut(s)	153
Kzo9I	GATC	5 cut(s)	295, 626, 676, 752, 1837
LmnI	GCTCC	9 cut(s)	57, 81, 138, 172, 804, 896, 1525, 1990, 2020
Lsp1109I	GCAGC	9 cut(s)	23, 60, 84, 160, 752, 953, 1669, 1691, 2101
LweI	GCATC	4 cut(s)	295, 405, 439, 1660
MaeI	CTAG	4 cut(s)	96, 668, 1674, 1755
MaeII	ACGT	3 cut(s)	126, 279, 1459
MaeIII	GTNAC	1 cut(s)	1420
MalI	GATC	5 cut(s)	297, 628, 678, 754, 1839
MbiI	CCGCTC	2 cut(s)	196, 2023
MboI	GATC	5 cut(s)	295, 626, 676, 752, 1837
MfeI	CAATTG	2 cut(s)	774, 1022
MflI	RGATCY	1 cut(s)	676
MhlI	GDGCHC	3 cut(s)	62, 177, 472
MluCI	AATT	7 cut(s)	430, 487, 774, 984, 1022, 1616, 2207
MmeI	TCCRAC	4 cut(s)	157, 500, 874, 1534
Mph1103I	ATGCAT	1 cut(s)	2121
MroNI	GCCGGC	1 cut(s)	151
MroXI	GAANNNNTTC	2 cut(s)	2031, 2100
MseI	TTAA	7 cut(s)	32, 558, 1215, 1530, 1793, 1979, 2227
MslI	CAYNNNNRTG	2 cut(s)	1691, 1941
MspA1I	CMGCKG	1 cut(s)	1682
MspI	CCGG	7 cut(s)	21, 52, 76, 122, 145, 152, 623
MspR9I	CCNGG	6 cut(s)	624, 1233, 1453, 1563, 1878, 2214
MunI	CAATTG	2 cut(s)	774, 1022
Mva1269I	GAATGC	2 cut(s)	1223, 1549
MvaI	CCWGG	5 cut(s)	1233, 1453, 1563, 1878, 2214
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	9 cut(s)	11, 17, 57, 81, 154, 1108, 1370, 1679, 2029
NaeI	GCCGGC	1 cut(s)	153
NciI	CCSGG	1 cut(s)	624
NdeI	CATATG	2 cut(s)	1417, 1942
NdeII	GATC	5 cut(s)	295, 626, 676, 752, 1837
NgoMIV	GCCGGC	1 cut(s)	151
NlaIII	CATG	3 cut(s)	232, 1136, 1920
NlaIV	GGNNCC	1 cut(s)	463
NsbI	TGCGCA	1 cut(s)	285
NsiI	ATGCAT	1 cut(s)	2121
NspI	RCATGY	1 cut(s)	232
NspV	TTCGAA	1 cut(s)	1770
PceI	AGGCCT	1 cut(s)	858
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PctI	GAATGC	2 cut(s)	1223, 1549
PdiI	GCCGGC	1 cut(s)	153
PdmI	GAANNNNTTC	2 cut(s)	2031, 2100
PfeI	GAWTC	3 cut(s)	423, 998, 1433
PfoI	TCCNGGA	3 cut(s)	622, 1561, 1876
PshAI	GACNNNNGTC	1 cut(s)	98
Psp124BI	GAGCTC	2 cut(s)	62, 177
Psp6I	CCWGG	5 cut(s)	1231, 1451, 1561, 1876, 2212
PspFI	CCCAGC	2 cut(s)	517, 803
PspGI	CCWGG	5 cut(s)	1231, 1451, 1561, 1876, 2212
PspN4I	GGNNCC	1 cut(s)	463
PspPI	GGNCC	4 cut(s)	183, 375, 617, 1826
PsuI	RGATCY	1 cut(s)	676
PvuII	CAGCTG	1 cut(s)	1682
RsaI	GTAC	2 cut(s)	863, 1699
RsaNI	GTAC	2 cut(s)	862, 1698
RseI	CAYNNNNRTG	2 cut(s)	1691, 1941
SacI	GAGCTC	2 cut(s)	62, 177
SalI	GTCGAC	2 cut(s)	91, 1951
SaqAI	TTAA	7 cut(s)	32, 558, 1215, 1530, 1793, 1979, 2227
Sau3AI	GATC	5 cut(s)	295, 626, 676, 752, 1837
Sau96I	GGNCC	4 cut(s)	183, 375, 617, 1826
ScrFI	CCNGG	6 cut(s)	624, 1233, 1453, 1563, 1878, 2214
SduI	GDGCHC	3 cut(s)	62, 177, 472
SfaNI	GCATC	4 cut(s)	295, 405, 439, 1660
SfcI	CTRYAG	1 cut(s)	1611
SfuI	TTCGAA	1 cut(s)	1770
SinI	GGWCC	2 cut(s)	617, 1826
SmiMI	CAYNNNNRTG	2 cut(s)	1691, 1941
SmlI	CTYRAG	3 cut(s)	176, 329, 1537
SmoI	CTYRAG	3 cut(s)	176, 329, 1537
SpeI	ACTAGT	1 cut(s)	95
Sse9I	AATT	7 cut(s)	430, 487, 774, 984, 1022, 1616, 2207
SseBI	AGGCCT	1 cut(s)	858
SsiI	CCGC	8 cut(s)	5, 8, 88, 186, 196, 1160, 1383, 2023
SspI	AATATT	2 cut(s)	875, 1862
SspMI	CTAG	4 cut(s)	96, 668, 1674, 1755
SstI	GAGCTC	2 cut(s)	62, 177
StuI	AGGCCT	1 cut(s)	858
StyD4I	CCNGG	6 cut(s)	622, 1231, 1451, 1561, 1876, 2212
StyI	CCWWGG	3 cut(s)	964, 1174, 2016
TaaI	ACNGT	6 cut(s)	792, 1426, 1702, 1714, 1732, 2070
TaiI	ACGT	3 cut(s)	129, 282, 1462
TaqI	TCGA	7 cut(s)	44, 68, 92, 399, 1716, 1770, 1952
TaqII	GACCGA	1 cut(s)	1830
TasI	AATT	7 cut(s)	430, 487, 774, 984, 1022, 1616, 2207
TatI	WGTACW	1 cut(s)	861
TauI	GCSGC	3 cut(s)	8, 11, 188
TfiI	GAWTC	3 cut(s)	423, 998, 1433
Tru1I	TTAA	7 cut(s)	32, 558, 1215, 1530, 1793, 1979, 2227
Tru9I	TTAA	7 cut(s)	32, 558, 1215, 1530, 1793, 1979, 2227
TscAI	CASTG	3 cut(s)	795, 871, 1249
TseI	GCWGC	9 cut(s)	11, 48, 72, 148, 740, 941, 1679, 1682, 2089
TspGWI	ACGGA	2 cut(s)	151, 719
TspRI	CASTG	3 cut(s)	795, 871, 1249
VpaK11BI	GGWCC	2 cut(s)	617, 1826
XapI	RAATTY	2 cut(s)	430, 487
XceI	RCATGY	1 cut(s)	232
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1090, 1642
XmiI	GTMKAC	2 cut(s)	92, 1952
XmnI	GAANNNNTTC	2 cut(s)	2031, 2100
XspI	CTAG	4 cut(s)	96, 668, 1674, 1755
Zsp2I	ATGCAT	1 cut(s)	2121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.