RLG00000012581
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003940
Physical Location & Seq
Reverse (-)
20140583 .. 20141167
585 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012581

Sequence Viewer

Length: 486 bp
ATGGAAATCTTCAGCTGTGACCTTGAAAAAGCCAGTTACGGTTTCAACAGAAGGGGTTCATTTTGGACTAACGATGGCAGGGTGGTTTTCTCAGCATCTTCAGTTGGAGAGGAAGATGAGGAAGCTCTCAAATGGGCAGCTCTACAAAGACTTCCTACCTTTACTCGTTTGAGAAAAGGGTTGCTCACTACTCCACAAGGCCATGCCAACGAAGTCGATGTGCATCACCTTGAGCTGCAAGAAAAGAAAGACTTGATCGAGAGGCTAGTGGGAGTTGCTGAGGAGGATCATGAGAAATTTTTGTTGAGGCTCAAGAGCCGAATTGATAGAGTTGGAATTAGTCTTTCTACAATTGAAGTTAGGTTCGAGCATTTGAAAATTGCAGCTGAAACTCATGTTGGAGGCAGGGCTCTGCCTTCTGTCTTCAATTATTGTGTTAATGTAATGGAGGCACTAATAGACTACCACATTTCAAGTTTTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

162

Amino Acids

18.29

Weight (kDa)

5.8

Isoelectric Point (pI)

40.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 94 - 143 2.6e-06 ABC-transporter N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 294
AcsI RAATTY 1 cut(s) 296
AcuI CTGAAG 1 cut(s) 84
AgsI TTSAA 6 cut(s) 26, 46, 356, 376, 427, 474
AjuI GAANNNNNNNTTGG 2 cut(s) 381, 413
AluBI AGCT 5 cut(s) 15, 125, 140, 235, 386
AluI AGCT 5 cut(s) 15, 125, 140, 235, 386
AlwI GGATC 1 cut(s) 294
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 3 cut(s) 137, 235, 383
ApoI RAATTY 1 cut(s) 296
Asp700I GAANNNNTTC 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 218
BanII GRGCYC 1 cut(s) 412
BbsI GAAGAC 1 cut(s) 415
BbvCI CCTCAGC 1 cut(s) 279
BbvI GCAGC 3 cut(s) 149, 222, 395
BccI CCATC 1 cut(s) 68
BfaI CTAG 1 cut(s) 266
BisI GCNGC 3 cut(s) 138, 236, 384
BlsI GCNGC 3 cut(s) 139, 237, 385
BmsI GCATC 2 cut(s) 104, 232
BpiI GAAGAC 1 cut(s) 415
Bpu10I CCTNAGC 1 cut(s) 279
BpuEI CTTGAG 2 cut(s) 251, 296
BsaBI GATNNNNATC 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 33
Bse8I GATNNNNATC 1 cut(s) 222
BseJI GATNNNNATC 1 cut(s) 222
BseMII CTCAG 2 cut(s) 105, 270
BseNI ACTGG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 296
BseXI GCAGC 3 cut(s) 149, 222, 395
BshFI GGCC 1 cut(s) 201
BsnI GGCC 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 412
Bsp143I GATC 2 cut(s) 255, 286
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 2 cut(s) 104, 271
BspHI TCATGA 1 cut(s) 289
BspPI GGATC 1 cut(s) 294
BsrI ACTGG 1 cut(s) 33
BssMI GATC 2 cut(s) 255, 286
Bst4CI ACNGT 1 cut(s) 41
BstDEI CTNAG 2 cut(s) 91, 279
BstKTI GATC 2 cut(s) 258, 289
BstMBI GATC 2 cut(s) 255, 286
BstV1I GCAGC 3 cut(s) 149, 222, 395
BstV2I GAAGAC 1 cut(s) 415
BsuRI GGCC 1 cut(s) 201
CciI TCATGA 1 cut(s) 289
CviAII CATG 3 cut(s) 203, 290, 395
DdeI CTNAG 2 cut(s) 91, 279
DpnI GATC 2 cut(s) 257, 288
DpnII GATC 2 cut(s) 255, 286
Eco24I GRGCYC 1 cut(s) 412
Eco57I CTGAAG 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 412
FaeI CATG 3 cut(s) 206, 293, 398
FaiI YATR 3 cut(s) 204, 291, 396
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FatI CATG 3 cut(s) 202, 289, 394
Fnu4HI GCNGC 3 cut(s) 138, 236, 384
FriOI GRGCYC 1 cut(s) 412
Fsp4HI GCNGC 3 cut(s) 138, 236, 384
FspBI CTAG 1 cut(s) 266
GluI GCNGC 3 cut(s) 138, 236, 384
HaeIII GGCC 1 cut(s) 201
Hin1II CATG 3 cut(s) 206, 293, 398
HphI GGTGA 1 cut(s) 218
Hpy188III TCNNGA 3 cut(s) 259, 290, 313
HpyAV CCTTC 2 cut(s) 45, 426
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4V TGCA 3 cut(s) 223, 238, 383
HpyF3I CTNAG 2 cut(s) 91, 279
Hsp92II CATG 3 cut(s) 206, 293, 398
Kzo9I GATC 2 cut(s) 255, 286
LpnPI CCDG 3 cut(s) 46, 64, 391
Lsp1109I GCAGC 3 cut(s) 149, 222, 395
LweI GCATC 2 cut(s) 104, 232
MaeI CTAG 1 cut(s) 266
MaeIII GTNAC 2 cut(s) 17, 35
MalI GATC 2 cut(s) 257, 288
MboI GATC 2 cut(s) 255, 286
MboII GAAGA 3 cut(s) 90, 125, 415
MfeI CAATTG 1 cut(s) 351
MhlI GDGCHC 1 cut(s) 412
MluCI AATT 6 cut(s) 296, 321, 336, 351, 378, 427
MmeI TCCRAC 3 cut(s) 85, 313, 379
MnlI CCTC 8 cut(s) 103, 112, 255, 274, 277, 300, 395, 442
MroXI GAANNNNTTC 1 cut(s) 55
MseI TTAA 1 cut(s) 438
MspA1I CMGCKG 2 cut(s) 15, 386
MunI CAATTG 1 cut(s) 351
NdeII GATC 2 cut(s) 255, 286
NlaIII CATG 3 cut(s) 206, 293, 398
NmuCI GTSAC 1 cut(s) 17
PagI TCATGA 1 cut(s) 289
PdmI GAANNNNTTC 1 cut(s) 55
PkrI GCNGC 3 cut(s) 139, 237, 385
PvuII CAGCTG 2 cut(s) 15, 386
SaqAI TTAA 1 cut(s) 438
SatI GCNGC 3 cut(s) 138, 236, 384
Sau3AI GATC 2 cut(s) 255, 286
SduI GDGCHC 1 cut(s) 412
SetI ASST 9 cut(s) 17, 24, 127, 142, 161, 231, 237, 365, 388
SfaNI GCATC 2 cut(s) 104, 232
SmlI CTYRAG 2 cut(s) 230, 311
SmoI CTYRAG 2 cut(s) 230, 311
Sse9I AATT 6 cut(s) 296, 321, 336, 351, 378, 427
SspMI CTAG 1 cut(s) 266
TaaI ACNGT 1 cut(s) 41
TaqI TCGA 3 cut(s) 216, 258, 366
TasI AATT 6 cut(s) 296, 321, 336, 351, 378, 427
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TseFI GTSAC 1 cut(s) 17
TseI GCWGC 3 cut(s) 137, 235, 383
Tsp45I GTSAC 1 cut(s) 17
TspDTI ATGAA 1 cut(s) 48
XapI RAATTY 1 cut(s) 296
XmnI GAANNNNTTC 1 cut(s) 55
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.