FvH4_2g41182

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000743
Physical Location & Seq
Reverse (-)
29184991 .. 29189039
4049 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g41182.t1

Sequence Viewer

Length: 807 bp
ATGGATGAAATGATGCGTGGACAAAGGGGTTGGAGAGAGTTAGCTGTTCTGGGAGATAAGATAAACAAATTTACTGGCATGATAGAAGGGTTAATCTGGTCCCCTCGAAGTAGTGAGGGTAATGATCAAGCTGATAATTGGGCTTTTGAGGAGGGGCCTCACTCTGATTTCAGTGGTCCAACTTCTGGGAGCACCGCTTGTGTTGCACTTATTAGAAATAACCAACTTATTGTTGCCAATGCTGGTGATTCTCGTTGTGTGATTTCTAGGAAGGGTCAGGCATATAACCTGTCCAGAGATCACAAACCCGATCTTGAGCTTGAGAAAGAAAGGATATTAAAAGCCGGTGGTTTTATCCATGCAGGACGAGTCAATGGCAGTTTGAATCTTGCAAGAGCTATAGGTGACATGGAATTCAAACAGAATAAATTCTTGCCGGTTGAAAAGCAAATTGTAACTGCCAGTCCAGATATAAATACTGTTGAACTTTGTGATGATGACGAGTTTATGGTGTTAGCATGTGATGGTATCTGGGATTGCATGTCAAGCCAGCAAGTGGTAGATTTTGTGCATGAACAGCTAAGCTCGGAGAGCAAACTGTCTGTGGTGGTTGAAAGAGTCCTTGACAAGTGTTTGGCACCGTCGACTGCTGGCGGAGAGGGATGTGATAACATGACCATGATCTTGGTGCAGTTCAAGAAGCCCATTGTGCCAGTTGAATCTGCGGGTAAGCAGCAGGAATCCTCAACAACCGAAGCACCAACACCTGAAACAGATGCAAGTCCAACTGAAAGTGAATCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0033993 GO:0042221 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

269

Amino Acids

29.27

Weight (kDa)

4.68

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 58 - 216 3.1e-61 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 637
AccB7I CCANNNNNTGG 2 cut(s) 185, 556
AccI GTMKAC 1 cut(s) 644
AciI CCGC 3 cut(s) 195, 654, 725
AcsI RAATTY 3 cut(s) 68, 413, 428
AfiI CCNNNNNNNGG 2 cut(s) 185, 556
AgsI TTSAA 7 cut(s) 385, 418, 443, 485, 614, 697, 719
AluBI AGCT 6 cut(s) 44, 131, 319, 398, 580, 585
AluI AGCT 6 cut(s) 44, 131, 319, 398, 580, 585
Alw21I GWGCWC 1 cut(s) 194
AoxI GGCC 1 cut(s) 155
ApeKI GCWGC 1 cut(s) 733
ApoI RAATTY 3 cut(s) 68, 413, 428
Asp700I GAANNNNTTC 1 cut(s) 428
AspS9I GGNCC 3 cut(s) 99, 155, 176
AsuHPI GGTGA 2 cut(s) 257, 416
AvaII GGWCC 2 cut(s) 99, 176
BanI GGYRCC 1 cut(s) 637
Bbv12I GWGCWC 1 cut(s) 194
BbvI GCAGC 1 cut(s) 745
BccI CCATC 1 cut(s) 518
BclI TGATCA 1 cut(s) 124
BfaI CTAG 1 cut(s) 267
BfmI CTRYAG 1 cut(s) 399
BisI GCNGC 1 cut(s) 734
BlpI GCTNAGC 1 cut(s) 581
BlsI GCNGC 1 cut(s) 735
Bme18I GGWCC 2 cut(s) 99, 176
BmgT120I GGNCC 3 cut(s) 99, 155, 176
BmiI GGNNCC 3 cut(s) 101, 156, 639
BmsI GCATC 2 cut(s) 3, 766
Bpu1102I GCTNAGC 1 cut(s) 581
BpuEI CTTGAG 2 cut(s) 335, 341
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 556
Bse118I RCCGGY 2 cut(s) 344, 436
Bse1I ACTGG 3 cut(s) 79, 462, 713
BseGI GGATG 2 cut(s) 10, 668
BseLI CCNNNNNNNGG 2 cut(s) 185, 556
BseNI ACTGG 3 cut(s) 79, 462, 713
BseRI GAGGAG 1 cut(s) 164
BseXI GCAGC 1 cut(s) 745
BsgI GTGCAG 1 cut(s) 710
BshFI GGCC 1 cut(s) 157
BshNI GGYRCC 1 cut(s) 637
BsiHKAI GWGCWC 1 cut(s) 194
BsiSI CCGG 2 cut(s) 345, 437
BslFI GGGAC 1 cut(s) 85
BslI CCNNNNNNNGG 2 cut(s) 185, 556
BsmFI GGGAC 1 cut(s) 85
BsnI GGCC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 194
Bsp143I GATC 4 cut(s) 124, 298, 310, 681
Bsp1720I GCTNAGC 1 cut(s) 581
BspACI CCGC 3 cut(s) 195, 654, 725
BspANI GGCC 1 cut(s) 157
BspLI GGNNCC 3 cut(s) 101, 156, 639
BspT107I GGYRCC 1 cut(s) 637
BsrFI RCCGGY 2 cut(s) 344, 436
BsrI ACTGG 3 cut(s) 79, 462, 713
BssAI RCCGGY 2 cut(s) 344, 436
BssMI GATC 4 cut(s) 124, 298, 310, 681
Bst4CI ACNGT 3 cut(s) 481, 600, 642
BstC8I GCNNGC 2 cut(s) 551, 652
BstDEI CTNAG 1 cut(s) 581
BstF5I GGATG 2 cut(s) 10, 668
BstKTI GATC 4 cut(s) 127, 301, 313, 684
BstMBI GATC 4 cut(s) 124, 298, 310, 681
BstMWI GCNNNNNNNGC 5 cut(s) 203, 546, 577, 591, 709
BstNSI RCATGY 2 cut(s) 522, 544
BstSFI CTRYAG 1 cut(s) 399
BstV1I GCAGC 1 cut(s) 745
BstXI CCANNNNNNTGG 1 cut(s) 685
BsuRI GGCC 1 cut(s) 157
BtsCI GGATG 2 cut(s) 10, 668
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 2 cut(s) 551, 652
Cfr10I RCCGGY 2 cut(s) 344, 436
Cfr13I GGNCC 3 cut(s) 99, 155, 176
CviAII CATG 8 cut(s) 79, 359, 409, 519, 541, 572, 673, 679
DdeI CTNAG 1 cut(s) 581
DpnI GATC 4 cut(s) 126, 300, 312, 683
DpnII GATC 4 cut(s) 124, 298, 310, 681
EciI GGCGGA 1 cut(s) 669
Eco47I GGWCC 2 cut(s) 99, 176
EcoO109I RGGNCCY 1 cut(s) 155
EcoRI GAATTC 1 cut(s) 413
FaeI CATG 8 cut(s) 82, 362, 412, 522, 544, 575, 676, 682
FaqI GGGAC 1 cut(s) 85
FatI CATG 8 cut(s) 78, 358, 408, 518, 540, 571, 672, 678
FauI CCCGC 1 cut(s) 718
FbaI TGATCA 1 cut(s) 124
FblI GTMKAC 1 cut(s) 644
Fnu4HI GCNGC 1 cut(s) 734
FokI GGATG 2 cut(s) 17, 675
Fsp4HI GCNGC 1 cut(s) 734
FspBI CTAG 1 cut(s) 267
GluI GCNGC 1 cut(s) 734
HaeIII GGCC 1 cut(s) 157
HapII CCGG 2 cut(s) 345, 437
Hin1II CATG 8 cut(s) 82, 362, 412, 522, 544, 575, 676, 682
HincII GTYRAC 1 cut(s) 645
HindII GTYRAC 1 cut(s) 645
HinfI GANTC 7 cut(s) 248, 369, 385, 618, 719, 740, 797
HpaII CCGG 2 cut(s) 345, 437
HphI GGTGA 2 cut(s) 257, 416
Hpy166II GTNNAC 2 cut(s) 20, 645
Hpy188I TCNGA 2 cut(s) 166, 589
Hpy188III TCNNGA 4 cut(s) 294, 314, 467, 697
Hpy8I GTNNAC 2 cut(s) 20, 645
Hpy99I CGWCG 1 cut(s) 646
HpyAV CCTTC 2 cut(s) 80, 265
HpyCH4III ACNGT 3 cut(s) 481, 600, 642
HpyCH4V TGCA 7 cut(s) 206, 362, 392, 540, 571, 691, 779
HpyF10VI GCNNNNNNNGC 5 cut(s) 203, 546, 577, 591, 709
HpyF3I CTNAG 1 cut(s) 581
Hsp92II CATG 8 cut(s) 82, 362, 412, 522, 544, 575, 676, 682
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 4 cut(s) 124, 298, 310, 681
LmnI GCTCC 1 cut(s) 189
Lsp1109I GCAGC 1 cut(s) 745
LweI GCATC 2 cut(s) 3, 766
MaeI CTAG 1 cut(s) 267
MaeIII GTNAC 2 cut(s) 404, 454
MalI GATC 4 cut(s) 126, 300, 312, 683
MboI GATC 4 cut(s) 124, 298, 310, 681
MhlI GDGCHC 1 cut(s) 194
MluCI AATT 6 cut(s) 68, 136, 413, 428, 450, 802
MlyI GAGTC 2 cut(s) 378, 627
MmeI TCCRAC 2 cut(s) 11, 203
MnlI CCTC 7 cut(s) 109, 114, 142, 145, 168, 652, 754
MroXI GAANNNNTTC 1 cut(s) 428
MseI TTAA 2 cut(s) 92, 338
MslI CAYNNNNRTG 1 cut(s) 677
MspI CCGG 2 cut(s) 345, 437
MwoI GCNNNNNNNGC 5 cut(s) 203, 546, 577, 591, 709
NdeII GATC 4 cut(s) 124, 298, 310, 681
NlaIII CATG 8 cut(s) 82, 362, 412, 522, 544, 575, 676, 682
NlaIV GGNNCC 3 cut(s) 101, 156, 639
NmuCI GTSAC 1 cut(s) 404
NspI RCATGY 2 cut(s) 522, 544
PdmI GAANNNNTTC 1 cut(s) 428
PfeI GAWTC 5 cut(s) 248, 385, 719, 740, 797
PflMI CCANNNNNTGG 2 cut(s) 185, 556
PkrI GCNGC 1 cut(s) 735
PleI GAGTC 2 cut(s) 377, 626
PpsI GAGTC 2 cut(s) 377, 626
PspN4I GGNNCC 3 cut(s) 101, 156, 639
PspPI GGNCC 3 cut(s) 99, 155, 176
RseI CAYNNNNRTG 1 cut(s) 677
SalI GTCGAC 1 cut(s) 643
SaqAI TTAA 2 cut(s) 92, 338
SatI GCNGC 1 cut(s) 734
Sau3AI GATC 4 cut(s) 124, 298, 310, 681
Sau96I GGNCC 3 cut(s) 99, 155, 176
SchI GAGTC 2 cut(s) 378, 627
SduI GDGCHC 1 cut(s) 194
SetI ASST 9 cut(s) 46, 133, 291, 321, 400, 406, 582, 587, 769
SfaNI GCATC 2 cut(s) 3, 766
SfcI CTRYAG 1 cut(s) 399
SinI GGWCC 2 cut(s) 99, 176
SmiMI CAYNNNNRTG 1 cut(s) 677
SmlI CTYRAG 2 cut(s) 314, 320
SmoI CTYRAG 2 cut(s) 314, 320
Sse9I AATT 6 cut(s) 68, 136, 413, 428, 450, 802
SsiI CCGC 3 cut(s) 195, 654, 725
SspMI CTAG 1 cut(s) 267
TaaI ACNGT 3 cut(s) 481, 600, 642
TaqI TCGA 2 cut(s) 106, 644
TasI AATT 6 cut(s) 68, 136, 413, 428, 450, 802
TfiI GAWTC 5 cut(s) 248, 385, 719, 740, 797
Tru1I TTAA 2 cut(s) 92, 338
Tru9I TTAA 2 cut(s) 92, 338
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 1 cut(s) 404
TseI GCWGC 1 cut(s) 733
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 2 cut(s) 21, 588
TspRI CASTG 1 cut(s) 178
Van91I CCANNNNNTGG 2 cut(s) 185, 556
VpaK11BI GGWCC 2 cut(s) 99, 176
XapI RAATTY 3 cut(s) 68, 413, 428
XceI RCATGY 2 cut(s) 522, 544
XmiI GTMKAC 1 cut(s) 644
XmnI GAANNNNTTC 1 cut(s) 428
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.