Rh2DG382300

protein phosphatase 2C 60

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000743
Physical Location & Seq
Forward (+)
55118202 .. 55126567
8366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG382300.1

Sequence Viewer

Length: 945 bp
ATGATTTGGATTATTAGGCACGGCGGTTTGGATATGCTGGAGATGGGAATATATCTGAGCGCTCCGAAAACCGATAAGGTGTCAGAAGATGGTGAGAATCATAGACTGCGATTTGGGGCTTCCTCCATGCAGGGGTGGCGTTCAACCATGGAAGATGCTCATGCTGCTTTTCCAGATCTCGACAATTCAACATCTTTCTTTGGTGTTTATGATGGTCATGGAGGTAAAGCGGTGGCAAATTTCTGTGCCAAGTATCTCCACTTACAAGTGCTCAACCAGGAAGCATATCTAGCTGGTGATTTAGGCACTTCCCTGCAGAAAGCTTTTCTCAGGATGGATGAGATGATGCGTGGACAGAGAGGATGGAGAGAACTAGCTGTATTGGGAGATAAGATAGACAAAGTTTCAGGCCTTATTGAAGGGTTCATCTTTTCTCCTAAGAGTGTTGAAGCTAAGAGAAGTGCATTCAATGATCAAATTGATCAGTGGTCTTCTGAGGAGGGGCCTCACTCTGATTTTGATGGACCAAACTCTGGAAGCACAGCTTGTGTTGCTATCATCCGAAACAATCAACTTGTTGTTGCCAATGCTGGTGATTCGCGTTGTGTAATATCGAGGAAGGGTCAGGCATATCCTTTGTCTAAAGATCATAAGCCTGACATTGAGAATGAGAAGGATAGAATTCTGAAGGCCGGTGGATTTATCCAAGTTGGACGGGTCAATGGAAGTTTGAACTTGGCAAGAGCGATTGGAGATGTGGAATTCAAGCAAAACAAACAATTGCCTGTTGAAAAGCAGATTGTAACTGCCAATCCAGATGTAACAAGTGTTGAGATTTGTGATGATGATGAGTTTCTTGTCATCGCTTGTGATGGGATATGGGACTGCATGTCAAACCAACAACTTGTGGATTATGTTGGGGAACAATTGAAACATGTAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

314

Amino Acids

34.66

Weight (kDa)

5.15

Isoelectric Point (pI)

35.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 37 - 118 3e-12 Protein phosphatase 2C
PP2C PF00481 150 - 311 6.8e-57 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 533
AccII CGCG 1 cut(s) 601
AciI CCGC 2 cut(s) 24, 230
AcsI RAATTY 3 cut(s) 238, 681, 761
AcuI CTGAAG 1 cut(s) 707
AfeI AGCGCT 1 cut(s) 61
AfiI CCNNNNNNNGG 2 cut(s) 132, 533
AflIII ACRYGT 1 cut(s) 934
AgsI TTSAA 9 cut(s) 144, 189, 419, 449, 469, 733, 766, 791, 931
AhdI GACNNNNNGTC 1 cut(s) 889
AjnI CCWGG 1 cut(s) 276
AluBI AGCT 5 cut(s) 293, 323, 377, 452, 545
AluI AGCT 5 cut(s) 293, 323, 377, 452, 545
Alw21I GWGCWC 1 cut(s) 273
Aor51HI AGCGCT 1 cut(s) 61
AoxI GGCC 3 cut(s) 409, 503, 690
ApeKI GCWGC 1 cut(s) 164
ApoI RAATTY 3 cut(s) 238, 681, 761
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 2 cut(s) 503, 524
AsuHPI GGTGA 3 cut(s) 104, 308, 605
AvaII GGWCC 1 cut(s) 524
BbsI GAAGAC 1 cut(s) 483
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 1 cut(s) 151
BccI CCATC 7 cut(s) 37, 83, 206, 328, 357, 515, 866
BceAI ACGGC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 278
BclI TGATCA 2 cut(s) 472, 481
BfaI CTAG 2 cut(s) 290, 374
BfmI CTRYAG 1 cut(s) 314
BfoI RGCGCY 1 cut(s) 63
BglII AGATCT 1 cut(s) 175
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 1 cut(s) 524
BmeRI GACNNNNNGTC 1 cut(s) 889
BmgT120I GGNCC 2 cut(s) 503, 524
BmiI GGNNCC 1 cut(s) 504
BmrFI CCNGG 1 cut(s) 278
BmsI GCATC 2 cut(s) 145, 336
BpiI GAAGAC 1 cut(s) 483
BpmI CTGGAG 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 147
Bsc4I CCNNNNNNNGG 2 cut(s) 132, 533
Bse118I RCCGGY 1 cut(s) 692
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 4 cut(s) 339, 343, 368, 558
BseLI CCNNNNNNNGG 2 cut(s) 132, 533
BseMII CTCAG 3 cut(s) 47, 343, 486
BseRI GAGGAG 1 cut(s) 512
BseXI GCAGC 1 cut(s) 151
Bsh1236I CGCG 1 cut(s) 601
BshFI GGCC 3 cut(s) 411, 505, 692
BsiHKAI GWGCWC 1 cut(s) 273
BsiSI CCGG 1 cut(s) 693
BslFI GGGAC 1 cut(s) 896
BslI CCNNNNNNNGG 2 cut(s) 132, 533
BsmFI GGGAC 1 cut(s) 896
BsmI GAATGC 1 cut(s) 464
BsnI GGCC 3 cut(s) 411, 505, 692
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 4 cut(s) 175, 472, 481, 646
Bsp19I CCATGG 1 cut(s) 147
BspACI CCGC 2 cut(s) 24, 230
BspANI GGCC 3 cut(s) 411, 505, 692
BspCNI CTCAG 3 cut(s) 48, 342, 487
BspFNI CGCG 1 cut(s) 601
BspLI GGNNCC 1 cut(s) 504
BspMAI CTGCAG 1 cut(s) 318
BsrFI RCCGGY 1 cut(s) 692
BssAI RCCGGY 1 cut(s) 692
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 4 cut(s) 175, 472, 481, 646
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 278
BstDEI CTNAG 5 cut(s) 56, 329, 438, 453, 495
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 4 cut(s) 339, 343, 368, 558
BstFNI CGCG 1 cut(s) 601
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 4 cut(s) 178, 475, 484, 649
BstMBI GATC 4 cut(s) 175, 472, 481, 646
BstMWI GCNNNNNNNGC 4 cut(s) 136, 164, 290, 551
BstNI CCWGG 1 cut(s) 278
BstNSI RCATGY 2 cut(s) 892, 938
BstSCI CCNGG 1 cut(s) 276
BstSFI CTRYAG 1 cut(s) 314
BstUI CGCG 1 cut(s) 601
BstV1I GCAGC 1 cut(s) 151
BstV2I GAAGAC 1 cut(s) 483
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BsuRI GGCC 3 cut(s) 411, 505, 692
BtgI CCRYGG 1 cut(s) 147
BtgZI GCGATG 1 cut(s) 847
BtsCI GGATG 4 cut(s) 339, 343, 368, 558
BtsIMutI CAGTG 1 cut(s) 491
CfoI GCGC 1 cut(s) 62
Cfr10I RCCGGY 1 cut(s) 692
Cfr13I GGNCC 2 cut(s) 503, 524
CviAII CATG 6 cut(s) 127, 148, 161, 218, 889, 935
DdeI CTNAG 5 cut(s) 56, 329, 438, 453, 495
DpnI GATC 4 cut(s) 177, 474, 483, 648
DpnII GATC 4 cut(s) 175, 472, 481, 646
DriI GACNNNNNGTC 1 cut(s) 889
Eam1105I GACNNNNNGTC 1 cut(s) 889
Eco130I CCWWGG 1 cut(s) 147
Eco147I AGGCCT 1 cut(s) 411
Eco47I GGWCC 1 cut(s) 524
Eco47III AGCGCT 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 707
EcoO109I RGGNCCY 1 cut(s) 503
EcoRI GAATTC 2 cut(s) 681, 761
EcoRII CCWGG 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 6 cut(s) 130, 151, 164, 221, 892, 938
FalI AAGNNNNNCTT 2 cut(s) 529, 561
FaqI GGGAC 1 cut(s) 896
FatI CATG 6 cut(s) 126, 147, 160, 217, 888, 934
FbaI TGATCA 2 cut(s) 472, 481
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 4 cut(s) 346, 350, 375, 545
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 2 cut(s) 290, 374
GlaI GCGC 1 cut(s) 61
GluI GCNGC 1 cut(s) 165
GsuI CTGGAG 1 cut(s) 59
HaeII RGCGCY 1 cut(s) 63
HaeIII GGCC 3 cut(s) 411, 505, 692
HapII CCGG 1 cut(s) 693
HhaI GCGC 1 cut(s) 62
Hin1II CATG 6 cut(s) 130, 151, 164, 221, 892, 938
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 321
HinfI GANTC 2 cut(s) 97, 596
HpaII CCGG 1 cut(s) 693
HphI GGTGA 3 cut(s) 104, 308, 605
Hpy166II GTNNAC 1 cut(s) 353
Hpy188I TCNGA 7 cut(s) 57, 66, 85, 496, 514, 563, 687
Hpy188III TCNNGA 5 cut(s) 173, 179, 331, 534, 815
Hpy8I GTNNAC 1 cut(s) 353
HpyAV CCTTC 4 cut(s) 413, 613, 667, 682
HpyCH4V TGCA 4 cut(s) 130, 316, 464, 888
HpyF10VI GCNNNNNNNGC 4 cut(s) 136, 164, 290, 551
HpyF3I CTNAG 5 cut(s) 56, 329, 438, 453, 495
Hsp92II CATG 6 cut(s) 130, 151, 164, 221, 892, 938
HspAI GCGC 1 cut(s) 60
Ksp22I TGATCA 2 cut(s) 472, 481
Kzo9I GATC 4 cut(s) 175, 472, 481, 646
LmnI GCTCC 1 cut(s) 67
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 2 cut(s) 145, 336
MaeI CTAG 2 cut(s) 290, 374
MaeIII GTNAC 2 cut(s) 802, 820
MalI GATC 4 cut(s) 177, 474, 483, 648
MboI GATC 4 cut(s) 175, 472, 481, 646
MboII GAAGA 3 cut(s) 98, 164, 483
MfeI CAATTG 2 cut(s) 779, 926
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 7 cut(s) 184, 238, 477, 681, 761, 779, 926
MmeI TCCRAC 1 cut(s) 691
MnlI CCTC 7 cut(s) 133, 215, 353, 490, 493, 516, 609
MspI CCGG 1 cut(s) 693
MspR9I CCNGG 1 cut(s) 278
MunI CAATTG 2 cut(s) 779, 926
Mva1269I GAATGC 1 cut(s) 464
MvaI CCWGG 1 cut(s) 278
MvnI CGCG 1 cut(s) 601
MwoI GCNNNNNNNGC 4 cut(s) 136, 164, 290, 551
NcoI CCATGG 1 cut(s) 147
NdeII GATC 4 cut(s) 175, 472, 481, 646
NlaIII CATG 6 cut(s) 130, 151, 164, 221, 892, 938
NlaIV GGNNCC 1 cut(s) 504
NspI RCATGY 2 cut(s) 892, 938
PceI AGGCCT 1 cut(s) 411
PciI ACATGT 1 cut(s) 934
PctI GAATGC 1 cut(s) 464
PfeI GAWTC 2 cut(s) 97, 596
PflMI CCANNNNNTGG 1 cut(s) 533
PkrI GCNGC 1 cut(s) 166
PscI ACATGT 1 cut(s) 934
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 1 cut(s) 504
PspPI GGNCC 2 cut(s) 503, 524
PstI CTGCAG 1 cut(s) 318
PsuI RGATCY 1 cut(s) 175
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 4 cut(s) 175, 472, 481, 646
Sau96I GGNCC 2 cut(s) 503, 524
ScrFI CCNGG 1 cut(s) 278
SduI GDGCHC 1 cut(s) 273
SetI ASST 7 cut(s) 81, 226, 295, 325, 379, 454, 547
SfaNI GCATC 2 cut(s) 145, 336
SfcI CTRYAG 1 cut(s) 314
SinI GGWCC 1 cut(s) 524
Sse9I AATT 7 cut(s) 184, 238, 477, 681, 761, 779, 926
SseBI AGGCCT 1 cut(s) 411
SsiI CCGC 2 cut(s) 24, 230
SspMI CTAG 2 cut(s) 290, 374
StuI AGGCCT 1 cut(s) 411
StyD4I CCNGG 1 cut(s) 276
StyI CCWWGG 1 cut(s) 147
TaqI TCGA 2 cut(s) 180, 614
TasI AATT 7 cut(s) 184, 238, 477, 681, 761, 779, 926
TfiI GAWTC 2 cut(s) 97, 596
TscAI CASTG 1 cut(s) 491
TseI GCWGC 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 415
TspRI CASTG 1 cut(s) 491
Van91I CCANNNNNTGG 1 cut(s) 533
VpaK11BI GGWCC 1 cut(s) 524
XapI RAATTY 3 cut(s) 238, 681, 761
XceI RCATGY 2 cut(s) 892, 938
XspI CTAG 2 cut(s) 290, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.