Prupe.1G395000_v2.0.a1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000743
Physical Location & Seq
Reverse (-)
35086200 .. 35088105
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G395000.1

Sequence Viewer

Length: 1524 bp
ATGGCTCTTGTGACCTGCAACTACACTTGTCTCTCACCTTCGCATGATCTGCAAAGATGGAATAAAATTATAAAGGCTCAAGTGCTTAAGGGAAATGCAGAGCATGCAATTCAATCATACATAGACATGCAAAGACTTGGTTTCTGTGCTGATAACTACACATTTCCCATTTTGCTCAAAGCAGCAGGCAATGCTTCTTATTTGCGTATTGGGGTAACCCTCCACGGCCAGACTGTTAAAACTGGTTTCTGCGACCATCTTTTCGTCCAAACTGCTCTGCTGAAAATGTATTCGTCTCTCGGGCTCCTCGTTAATGCTCGTAAAGCGTTTGATAAAATGCCTGTGAGAGATGTGGTAGCCTGGAACTCCATGTTAGATGTGTATGCTTCTGGTGGCCAGATGGATAATGCAATCGAAATTTTCGATACAATGCCATTGCAGGACCTCTCATCCTTCAATATTATGATCTCCGGGTTTGCAGGCATGGGTAGCGTAACATCTGCGAGAAGTGTGTTTGATGGAATTCCTGAGAAAGACATCGTCTCATGGAACTCGATGATACTGGCATGCATGAACGCTGGAGATGTGGCTGAAGCACATACATTGTTTGAGGCAATGCCAGAAAGAAATGTCATAACCTGGAACACAATGATAATGGGTTATTTGAACAATCAACTTCCCACCAAAGCTATCGATCTCTTCTACAAAATGAAGGCTGGAAACACCAAACCTGATTATCTGACTGTGACTGGTGCTTTATCTGCCTGTGCTCACTTGGGTTCACTTGAAACAGGCATGGAGATACACACATATGCCAAAATGCTTGGGCAGGCCTCAAGTCCCCATGTAGTAACAGCACTGATAGATATGTATGCTAAGTGTGGAAGCATAGGGAGCTCCTTAGAGGTCTTTTATAAGTCGAAAGTTAAGGATATCTACTGTTGGAATGCCATACTTTCAGGTCTTGCTCTACATGGTTTCGGCTCGGCTGCTCTGAAATTCTTGGGCGAAATGAGAGAGAATCGTATAAAACCAGATGATATCACCTTCATTGCTTTGCTAAGTGCATGCAGTCATGCAGGGCTGGTGGAAGAAGGATGCCAGTTGTTTGCTTGCATGGGAAAGCAATTTGGGATCACTCCAAAGGCAGAGCATTATGGGTGCATGGTTGATCTTTTAAGCAAAGCCAGGTTTTTTGACTCTGCGCTGCAACTCATTGAGACGATGTCGTTTGAACCGGGCGAGTCGGTCTTGGGTGCCTTGCTTGGTGCTTGTGTCATTCATCAGGACCTTGAAAATGGGGAGAAAGCTATGAAGCTAATTATGGACAGGGCTTGTTCCTTGAGCGATGGTGAATATATGATGTTTGCTAACTTGTATGCATCCTGCGGTCAATGGGAGGAAGCACAAAGATGGAGAAATATGATGAATGATTCAGGCATTGTTAAGACTGCTGGCTGCAGTGAAATTCAGATCAATGGAAGGGTTCACAAGTTTTTGGCTGGAGAGATTGGCAGAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

508

Amino Acids

55.61

Weight (kDa)

5.92

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 71, 915
Acc36I ACCTGC 1 cut(s) 23
AccB1I GGYRCC 1 cut(s) 1256
AciI CCGC 1 cut(s) 1389
AclWI GGATC 1 cut(s) 1142
AcoI YGGCCR 2 cut(s) 226, 394
AcsI RAATTY 4 cut(s) 417, 522, 998, 1467
AcuI CTGAAG 1 cut(s) 612
AflII CTTAAG 1 cut(s) 86
AgsI TTSAA 6 cut(s) 113, 457, 667, 788, 1235, 1295
AjnI CCWGG 3 cut(s) 359, 638, 1187
AluBI AGCT 4 cut(s) 689, 897, 1310, 1318
AluI AGCT 4 cut(s) 689, 897, 1310, 1318
Alw21I GWGCWC 2 cut(s) 772, 899
Alw26I GTCTC 4 cut(s) 35, 300, 547, 1214
AlwI GGATC 1 cut(s) 1142
Ama87I CYCGRG 1 cut(s) 299
AoxI GGCC 3 cut(s) 226, 394, 831
ApeKI GCWGC 4 cut(s) 182, 989, 1207, 1458
ApoI RAATTY 4 cut(s) 417, 522, 998, 1467
ArsI GACNNNNNNTTYG 2 cut(s) 245, 277
AspLEI GCGC 1 cut(s) 1207
AspS9I GGNCC 2 cut(s) 442, 1288
AsuC2I CCSGG 2 cut(s) 472, 1239
AsuHPI GGTGA 3 cut(s) 27, 1036, 1364
AvaI CYCGRG 1 cut(s) 299
AvaII GGWCC 2 cut(s) 442, 1288
BalI TGGCCA 1 cut(s) 396
BanI GGYRCC 1 cut(s) 1256
BanII GRGCYC 2 cut(s) 306, 899
Bbv12I GWGCWC 2 cut(s) 772, 899
BbvI GCAGC 4 cut(s) 194, 976, 1194, 1445
BccI CCATC 6 cut(s) 51, 264, 394, 512, 1343, 1407
BceAI ACGGC 1 cut(s) 241
BciT130I CCWGG 3 cut(s) 361, 640, 1189
BcnI CCSGG 2 cut(s) 472, 1239
BcoDI GTCTC 4 cut(s) 35, 300, 547, 1214
BfmI CTRYAG 1 cut(s) 1459
BfrI CTTAAG 1 cut(s) 86
BfuAI ACCTGC 1 cut(s) 23
BisI GCNGC 4 cut(s) 183, 990, 1208, 1459
BlsI GCNGC 4 cut(s) 184, 991, 1209, 1460
Bme1390I CCNGG 5 cut(s) 361, 472, 640, 1189, 1239
Bme18I GGWCC 2 cut(s) 442, 1288
BmeT110I CYCGRG 1 cut(s) 299
BmgT120I GGNCC 2 cut(s) 442, 1288
BmiI GGNNCC 2 cut(s) 305, 1258
BmrFI CCNGG 5 cut(s) 361, 472, 640, 1189, 1239
BmsI GCATC 2 cut(s) 1088, 1391
BpmI CTGGAG 2 cut(s) 600, 1524
BpuEI CTTGAG 3 cut(s) 63, 820, 1363
BpuMI CCSGG 2 cut(s) 472, 1239
Bsa29I ATCGAT 1 cut(s) 693
BsaJI CCNNGG 1 cut(s) 223
Bse1I ACTGG 4 cut(s) 247, 567, 754, 1102
Bse3DI GCAATG 4 cut(s) 196, 434, 621, 1050
BseBI CCWGG 3 cut(s) 361, 640, 1189
BseCI ATCGAT 1 cut(s) 693
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 3 cut(s) 449, 1103, 1382
BseMI GCAATG 4 cut(s) 196, 434, 621, 1050
BseMII CTCAG 1 cut(s) 519
BseNI ACTGG 4 cut(s) 247, 567, 754, 1102
BseRI GAGGAG 1 cut(s) 296
BseXI GCAGC 4 cut(s) 194, 976, 1194, 1445
BshFI GGCC 3 cut(s) 228, 396, 833
BshNI GGYRCC 1 cut(s) 1256
BshVI ATCGAT 1 cut(s) 693
BsiHKAI GWGCWC 2 cut(s) 772, 899
BsiHKCI CYCGRG 1 cut(s) 299
BsiSI CCGG 2 cut(s) 471, 1238
BslFI GGGAC 1 cut(s) 825
BsmAI GTCTC 4 cut(s) 35, 300, 547, 1214
BsmBI CGTCTC 3 cut(s) 300, 547, 1214
BsmFI GGGAC 1 cut(s) 825
BsmI GAATGC 1 cut(s) 952
BsnI GGCC 3 cut(s) 228, 396, 833
BsoBI CYCGRG 1 cut(s) 299
Bsp1286I GDGCHC 3 cut(s) 306, 772, 899
Bsp143I GATC 6 cut(s) 46, 465, 694, 1134, 1171, 1473
BspACI CCGC 1 cut(s) 1389
BspANI GGCC 3 cut(s) 228, 396, 833
BspCNI CTCAG 1 cut(s) 520
BspDI ATCGAT 1 cut(s) 693
BspLI GGNNCC 2 cut(s) 305, 1258
BspMAI CTGCAG 1 cut(s) 1463
BspMI ACCTGC 1 cut(s) 23
BspPI GGATC 1 cut(s) 1142
BspT107I GGYRCC 1 cut(s) 1256
BspTI CTTAAG 1 cut(s) 86
BsrDI GCAATG 4 cut(s) 196, 434, 621, 1050
BsrI ACTGG 4 cut(s) 247, 567, 754, 1102
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 6 cut(s) 46, 465, 694, 1134, 1171, 1473
Bst2UI CCWGG 3 cut(s) 361, 640, 1189
Bst4CI ACNGT 3 cut(s) 235, 745, 941
Bst6I CTCTTC 1 cut(s) 704
BstAFI CTTAAG 1 cut(s) 86
BstAPI GCANNNNNTGC 3 cut(s) 49, 104, 191
BstC8I GCNNGC 8 cut(s) 105, 187, 481, 568, 831, 1069, 1114, 1456
BstDEI CTNAG 4 cut(s) 528, 876, 901, 1061
BstDSI CCRYGG 1 cut(s) 223
BstEII GGTNACC 1 cut(s) 214
BstF5I GGATG 3 cut(s) 449, 1103, 1382
BstHHI GCGC 1 cut(s) 1207
BstKTI GATC 6 cut(s) 49, 468, 697, 1137, 1174, 1476
BstMAI GTCTC 4 cut(s) 35, 300, 547, 1214
BstMBI GATC 6 cut(s) 46, 465, 694, 1134, 1171, 1473
BstMWI GCNNNNNNNGC 7 cut(s) 49, 104, 191, 323, 489, 761, 894
BstNI CCWGG 3 cut(s) 361, 640, 1189
BstNSI RCATGY 4 cut(s) 107, 130, 570, 1071
BstPI GGTNACC 1 cut(s) 214
BstSCI CCNGG 5 cut(s) 359, 470, 638, 1187, 1237
BstSFI CTRYAG 1 cut(s) 1459
BstV1I GCAGC 4 cut(s) 194, 976, 1194, 1445
Bsu15I ATCGAT 1 cut(s) 693
BsuRI GGCC 3 cut(s) 228, 396, 833
BsuTUI ATCGAT 1 cut(s) 693
BtgI CCRYGG 1 cut(s) 223
BtgZI GCGATG 1 cut(s) 1362
BtsCI GGATG 3 cut(s) 449, 1103, 1382
BtsI GCAGTG 1 cut(s) 1468
BtsIMutI CAGTG 2 cut(s) 857, 1468
BveI ACCTGC 1 cut(s) 23
Cac8I GCNNGC 8 cut(s) 105, 187, 481, 568, 831, 1069, 1114, 1456
CfoI GCGC 1 cut(s) 1207
Cfr13I GGNCC 2 cut(s) 442, 1288
ClaI ATCGAT 1 cut(s) 693
DdeI CTNAG 4 cut(s) 528, 876, 901, 1061
DpnI GATC 6 cut(s) 48, 467, 696, 1136, 1173, 1475
DpnII GATC 6 cut(s) 46, 465, 694, 1134, 1171, 1473
EaeI YGGCCR 2 cut(s) 226, 394
Eam1104I CTCTTC 1 cut(s) 704
EarI CTCTTC 1 cut(s) 704
Ecl136II GAGCTC 1 cut(s) 897
Eco147I AGGCCT 1 cut(s) 833
Eco24I GRGCYC 2 cut(s) 306, 899
Eco32I GATATC 2 cut(s) 934, 1042
Eco47I GGWCC 2 cut(s) 442, 1288
Eco53kI GAGCTC 1 cut(s) 897
Eco57I CTGAAG 1 cut(s) 612
Eco88I CYCGRG 1 cut(s) 299
Eco91I GGTNACC 1 cut(s) 214
EcoICRI GAGCTC 1 cut(s) 897
EcoO109I RGGNCCY 2 cut(s) 442, 1288
EcoO65I GGTNACC 1 cut(s) 214
EcoRI GAATTC 1 cut(s) 522
EcoRII CCWGG 3 cut(s) 359, 638, 1187
EcoRV GATATC 2 cut(s) 934, 1042
EcoT22I ATGCAT 2 cut(s) 572, 1384
EcoT38I GRGCYC 2 cut(s) 306, 899
Esp3I CGTCTC 3 cut(s) 300, 547, 1214
FaqI GGGAC 1 cut(s) 825
FauNDI CATATG 1 cut(s) 811
Fnu4HI GCNGC 4 cut(s) 183, 990, 1208, 1459
FokI GGATG 3 cut(s) 436, 1110, 1369
FriOI GRGCYC 2 cut(s) 306, 899
Fsp4HI GCNGC 4 cut(s) 183, 990, 1208, 1459
GlaI GCGC 1 cut(s) 1206
GluI GCNGC 4 cut(s) 183, 990, 1208, 1459
GsuI CTGGAG 2 cut(s) 600, 1524
HaeIII GGCC 3 cut(s) 228, 396, 833
HapII CCGG 2 cut(s) 471, 1238
HhaI GCGC 1 cut(s) 1207
Hin6I GCGC 1 cut(s) 1205
HinP1I GCGC 1 cut(s) 1205
HinfI GANTC 4 cut(s) 1021, 1199, 1244, 1433
HpaII CCGG 2 cut(s) 471, 1238
HphI GGTGA 3 cut(s) 27, 1036, 1364
Hpy166II GTNNAC 2 cut(s) 782, 1489
Hpy188I TCNGA 3 cut(s) 741, 996, 1473
Hpy188III TCNNGA 2 cut(s) 527, 1286
Hpy8I GTNNAC 2 cut(s) 782, 1489
HpyAV CCTTC 6 cut(s) 48, 463, 706, 1057, 1088, 1476
HpyCH4III ACNGT 3 cut(s) 235, 745, 941
HpyF10VI GCNNNNNNNGC 7 cut(s) 49, 104, 191, 323, 489, 761, 894
HpyF3I CTNAG 4 cut(s) 528, 876, 901, 1061
HspAI GCGC 1 cut(s) 1205
Kzo9I GATC 6 cut(s) 46, 465, 694, 1134, 1171, 1473
LmnI GCTCC 3 cut(s) 309, 894, 902
Lsp1109I GCAGC 4 cut(s) 194, 976, 1194, 1445
LweI GCATC 2 cut(s) 1088, 1391
MaeIII GTNAC 5 cut(s) 10, 214, 493, 745, 850
MalI GATC 6 cut(s) 48, 467, 696, 1136, 1173, 1475
MboI GATC 6 cut(s) 46, 465, 694, 1134, 1171, 1473
MboII GAAGA 2 cut(s) 691, 1103
MhlI GDGCHC 3 cut(s) 306, 772, 899
MlsI TGGCCA 1 cut(s) 396
MluCI AATT 8 cut(s) 66, 108, 417, 522, 998, 1127, 1320, 1467
MluNI TGGCCA 1 cut(s) 396
MlyI GAGTC 2 cut(s) 1193, 1253
MmeI TCCRAC 1 cut(s) 923
MnlI CCTC 7 cut(s) 230, 317, 455, 604, 844, 898, 1393
Mox20I TGGCCA 1 cut(s) 396
Mph1103I ATGCAT 2 cut(s) 572, 1384
MscI TGGCCA 1 cut(s) 396
MseI TTAA 7 cut(s) 87, 237, 312, 927, 1178, 1446, 1522
MslI CAYNNNNRTG 3 cut(s) 125, 810, 1411
Msp20I TGGCCA 1 cut(s) 396
MspCI CTTAAG 1 cut(s) 86
MspI CCGG 2 cut(s) 471, 1238
MspR9I CCNGG 5 cut(s) 361, 472, 640, 1189, 1239
Mva1269I GAATGC 1 cut(s) 952
MvaI CCWGG 3 cut(s) 361, 640, 1189
MwoI GCNNNNNNNGC 7 cut(s) 49, 104, 191, 323, 489, 761, 894
NciI CCSGG 2 cut(s) 472, 1239
NdeI CATATG 1 cut(s) 811
NdeII GATC 6 cut(s) 46, 465, 694, 1134, 1171, 1473
NlaIV GGNNCC 2 cut(s) 305, 1258
NmeAIII GCCGAG 1 cut(s) 965
NmuCI GTSAC 2 cut(s) 10, 745
NsiI ATGCAT 2 cut(s) 572, 1384
NspI RCATGY 4 cut(s) 107, 130, 570, 1071
PaeI GCATGC 3 cut(s) 107, 570, 1071
PceI AGGCCT 1 cut(s) 833
PcsI WCGNNNNNNNCGW 2 cut(s) 306, 420
PctI GAATGC 1 cut(s) 952
PfeI GAWTC 2 cut(s) 1021, 1433
PflFI GACNNNGTC 2 cut(s) 539, 1225
PkrI GCNGC 4 cut(s) 184, 991, 1209, 1460
PleI GAGTC 2 cut(s) 1193, 1252
PpsI GAGTC 2 cut(s) 1193, 1252
PpuMI RGGWCCY 2 cut(s) 442, 1288
PsiI TTATAA 2 cut(s) 71, 915
Psp124BI GAGCTC 1 cut(s) 899
Psp5II RGGWCCY 2 cut(s) 442, 1288
Psp6I CCWGG 3 cut(s) 359, 638, 1187
PspEI GGTNACC 1 cut(s) 214
PspGI CCWGG 3 cut(s) 359, 638, 1187
PspN4I GGNNCC 2 cut(s) 305, 1258
PspPI GGNCC 2 cut(s) 442, 1288
PspPPI RGGWCCY 2 cut(s) 442, 1288
PstI CTGCAG 1 cut(s) 1463
PsyI GACNNNGTC 2 cut(s) 539, 1225
RseI CAYNNNNRTG 3 cut(s) 125, 810, 1411
SacI GAGCTC 1 cut(s) 899
SaqAI TTAA 7 cut(s) 87, 237, 312, 927, 1178, 1446, 1522
SatI GCNGC 4 cut(s) 183, 990, 1208, 1459
Sau3AI GATC 6 cut(s) 46, 465, 694, 1134, 1171, 1473
Sau96I GGNCC 2 cut(s) 442, 1288
SchI GAGTC 2 cut(s) 1193, 1253
ScrFI CCNGG 5 cut(s) 361, 472, 640, 1189, 1239
SduI GDGCHC 3 cut(s) 306, 772, 899
SfaNI GCATC 2 cut(s) 1088, 1391
SfcI CTRYAG 1 cut(s) 1459
SinI GGWCC 2 cut(s) 442, 1288
SmiMI CAYNNNNRTG 3 cut(s) 125, 810, 1411
SmlI CTYRAG 4 cut(s) 78, 86, 835, 1342
SmoI CTYRAG 4 cut(s) 78, 86, 835, 1342
SphI GCATGC 3 cut(s) 107, 570, 1071
Sse9I AATT 8 cut(s) 66, 108, 417, 522, 998, 1127, 1320, 1467
SseBI AGGCCT 1 cut(s) 833
SsiI CCGC 1 cut(s) 1389
SspI AATATT 1 cut(s) 460
SstI GAGCTC 1 cut(s) 899
StuI AGGCCT 1 cut(s) 833
StyD4I CCNGG 5 cut(s) 359, 470, 638, 1187, 1237
TaaI ACNGT 3 cut(s) 235, 745, 941
TaqI TCGA 5 cut(s) 414, 423, 554, 693, 920
TaqII GACCGA 1 cut(s) 1237
TasI AATT 8 cut(s) 66, 108, 417, 522, 998, 1127, 1320, 1467
TfiI GAWTC 2 cut(s) 1021, 1433
Tru1I TTAA 7 cut(s) 87, 237, 312, 927, 1178, 1446, 1522
Tru9I TTAA 7 cut(s) 87, 237, 312, 927, 1178, 1446, 1522
TscAI CASTG 2 cut(s) 864, 1468
TseFI GTSAC 2 cut(s) 10, 745
TseI GCWGC 4 cut(s) 182, 989, 1207, 1458
Tsp45I GTSAC 2 cut(s) 10, 745
TspDTI ATGAA 6 cut(s) 587, 725, 1039, 1271, 1328, 1442
TspRI CASTG 2 cut(s) 864, 1468
Tth111I GACNNNGTC 2 cut(s) 539, 1225
Vha464I CTTAAG 1 cut(s) 86
VpaK11BI GGWCC 2 cut(s) 442, 1288
XapI RAATTY 4 cut(s) 417, 522, 998, 1467
XceI RCATGY 4 cut(s) 107, 130, 570, 1071
Zsp2I ATGCAT 2 cut(s) 572, 1384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.