Rw6G034910

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000743
Physical Location & Seq
Forward (+)
59489413 .. 59493783
4371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G034910.1

Sequence Viewer

Length: 966 bp
ATGGGTATATATCTCAGCACCCCCAAAACTGACAAGTTCTCTGAAGATGGAGAGAATGGCTGGGTCAGATATGGTCTATCGTCCATGCAAGGATGGCGTGCAACTATGGAGGATGCTCATGCAGCATATCCCGATCTAGATGCATCCACCTCGTTCTTTGGTGTTTATGATGGCCATGGAGGAAAGGTAGTTGCTAAATTCTGTGCCAAATATCTTCACCGACAAATGCTCAAGAATGAAGCATATTCAGCTGGAGACATAGGAACTTCTGTTCAAAAAGCTTTTTTCAGGTTAATCTGGTCTCCGAGGAGCAGTGAGGGTAATGATCAAGCTGATGATTGGGCTTTTGAGGAGGGGCCTCACTCTGATTTCAGTGGTCCAACTTCTGGGAGCACAGCTTGTGTTGCAATTATTAGAAACAACCAACTTGTTGTTGCAAATGCTGGTGATTCTCGTTGTGTGATATCTAGGAAGGGTCAGGCATATAACCTGTCCAGAGATCACAAACCTGAACTTGAGCTTGAGAAGGAAAGGATTTTAAAAGCTGGTGGTTTTATCCATGCAGGACGAGTCAATGGCAGTTTGAATCTTGCAAGAGCTATAGGTGACATGGAATTCAAGCAGAATAAATTCCTGCCAGCGGAAAAGCAAATTGTCACTGCCAGTCCTGATATAAATGCTGTTGAACTTTGTGATGATGATGAGTTTATGGTCTTAGCATGTGATGGTATCTGGGATTGCATGTCAAGCCAGCAACTGGTAGATTTTGTGCATGAACACCTAAGCTCGGAAAGCAAACTGTCTGTGGTGGTTGAAAGAGTCCTTGACAAATGTTTGGCACCATCGACTGCTGGTGGGGAGGGATGCGATAACATGACCATGATCTTGGTGCAATTCAAGAAGCCTATTGTGCCAGTTGAATCTGCGGGTAAGCAGCAGGAATCCTCAACAACCGAAGAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0033993 GO:0042221 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

321

Amino Acids

35.11

Weight (kDa)

5.04

Isoelectric Point (pI)

37.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 23 - 283 1.3e-73 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 838
AccB7I CCANNNNNTGG 2 cut(s) 386, 757
AciI CCGC 2 cut(s) 641, 926
AcoI YGGCCR 1 cut(s) 172
AcsI RAATTY 3 cut(s) 197, 614, 629
AcuI CTGAAG 1 cut(s) 63
AfiI CCNNNNNNNGG 5 cut(s) 386, 640, 757, 787, 960
AgsI TTSAA 7 cut(s) 275, 586, 619, 686, 815, 898, 920
AloI GAACNNNNNNTCC 2 cut(s) 255, 287
AluBI AGCT 8 cut(s) 251, 281, 332, 398, 520, 545, 599, 786
AluI AGCT 8 cut(s) 251, 281, 332, 398, 520, 545, 599, 786
Alw21I GWGCWC 1 cut(s) 395
Alw26I GTCTC 2 cut(s) 249, 306
AlwNI CAGNNNCTG 1 cut(s) 757
AoxI GGCC 2 cut(s) 172, 356
ApeKI GCWGC 2 cut(s) 122, 934
ApoI RAATTY 3 cut(s) 197, 614, 629
Asp700I GAANNNNTTC 1 cut(s) 629
AspS9I GGNCC 2 cut(s) 356, 377
AsuHPI GGTGA 3 cut(s) 209, 458, 617
AvaII GGWCC 1 cut(s) 377
BalI TGGCCA 1 cut(s) 174
BanI GGYRCC 1 cut(s) 838
Bbv12I GWGCWC 1 cut(s) 395
BbvI GCAGC 2 cut(s) 134, 946
BccI CCATC 5 cut(s) 41, 87, 164, 719, 850
BcgI CGANNNNNNTGC 4 cut(s) 122, 132, 156, 166
BclI TGATCA 1 cut(s) 325
BcoDI GTCTC 2 cut(s) 249, 306
BfaI CTAG 2 cut(s) 137, 468
BfmI CTRYAG 1 cut(s) 600
BisI GCNGC 2 cut(s) 123, 935
BlsI GCNGC 2 cut(s) 124, 936
Bme18I GGWCC 1 cut(s) 377
BmgT120I GGNCC 2 cut(s) 356, 377
BmiI GGNNCC 2 cut(s) 357, 840
BmsI GCATC 4 cut(s) 103, 130, 152, 854
BpmI CTGGAG 1 cut(s) 273
Bpu10I CCTNAGC 1 cut(s) 782
BpuEI CTTGAG 3 cut(s) 215, 536, 542
BsaI GGTCTC 1 cut(s) 306
BsaJI CCNNGG 2 cut(s) 175, 305
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 5 cut(s) 386, 640, 757, 787, 960
Bse1I ACTGG 3 cut(s) 663, 762, 914
BseDI CCNNGG 2 cut(s) 175, 305
BseGI GGATG 4 cut(s) 98, 118, 143, 869
BseLI CCNNNNNNNGG 5 cut(s) 386, 640, 757, 787, 960
BseMII CTCAG 1 cut(s) 28
BseNI ACTGG 3 cut(s) 663, 762, 914
BseRI GAGGAG 2 cut(s) 322, 365
BseXI GCAGC 2 cut(s) 134, 946
BseYI CCCAGC 1 cut(s) 60
BshFI GGCC 2 cut(s) 174, 358
BshNI GGYRCC 1 cut(s) 838
BsiHKAI GWGCWC 1 cut(s) 395
BslI CCNNNNNNNGG 5 cut(s) 386, 640, 757, 787, 960
BsmAI GTCTC 2 cut(s) 249, 306
BsnI GGCC 2 cut(s) 174, 358
Bso31I GGTCTC 1 cut(s) 306
Bsp1286I GDGCHC 1 cut(s) 395
Bsp143I GATC 4 cut(s) 133, 325, 499, 882
Bsp19I CCATGG 1 cut(s) 175
BspACI CCGC 2 cut(s) 641, 926
BspANI GGCC 2 cut(s) 174, 358
BspCNI CTCAG 1 cut(s) 27
BspLI GGNNCC 2 cut(s) 357, 840
BspT107I GGYRCC 1 cut(s) 838
BspTNI GGTCTC 1 cut(s) 306
BsrI ACTGG 3 cut(s) 663, 762, 914
BssECI CCNNGG 2 cut(s) 175, 305
BssMI GATC 4 cut(s) 133, 325, 499, 882
BssT1I CCWWGG 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 801
BstC8I GCNNGC 3 cut(s) 99, 639, 752
BstDEI CTNAG 3 cut(s) 14, 715, 782
BstDSI CCRYGG 1 cut(s) 175
BstF5I GGATG 4 cut(s) 98, 118, 143, 869
BstKTI GATC 4 cut(s) 136, 328, 502, 885
BstMAI GTCTC 2 cut(s) 249, 306
BstMBI GATC 4 cut(s) 133, 325, 499, 882
BstMWI GCNNNNNNNGC 7 cut(s) 94, 122, 248, 404, 747, 792, 910
BstNSI RCATGY 2 cut(s) 723, 745
BstSFI CTRYAG 1 cut(s) 600
BstV1I GCAGC 2 cut(s) 134, 946
BstXI CCANNNNNNTGG 1 cut(s) 886
BsuRI GGCC 2 cut(s) 174, 358
BtgI CCRYGG 1 cut(s) 175
BtsCI GGATG 4 cut(s) 98, 118, 143, 869
BtsI GCAGTG 2 cut(s) 319, 657
BtsIMutI CAGTG 3 cut(s) 319, 379, 657
Cac8I GCNNGC 3 cut(s) 99, 639, 752
CaiI CAGNNNCTG 1 cut(s) 757
Cfr13I GGNCC 2 cut(s) 356, 377
DdeI CTNAG 3 cut(s) 14, 715, 782
DpnI GATC 4 cut(s) 135, 327, 501, 884
DpnII GATC 4 cut(s) 133, 325, 499, 882
DraI TTTAAA 1 cut(s) 540
EaeI YGGCCR 1 cut(s) 172
Eco130I CCWWGG 1 cut(s) 175
Eco31I GGTCTC 1 cut(s) 306
Eco32I GATATC 1 cut(s) 465
Eco47I GGWCC 1 cut(s) 377
Eco57I CTGAAG 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 356
EcoRI GAATTC 1 cut(s) 614
EcoRV GATATC 1 cut(s) 465
EcoT14I CCWWGG 1 cut(s) 175
EcoT22I ATGCAT 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 175
FauI CCCGC 1 cut(s) 919
FbaI TGATCA 1 cut(s) 325
Fnu4HI GCNGC 2 cut(s) 123, 935
FokI GGATG 4 cut(s) 105, 125, 130, 876
Fsp4HI GCNGC 2 cut(s) 123, 935
FspBI CTAG 2 cut(s) 137, 468
GluI GCNGC 2 cut(s) 123, 935
GsaI CCCAGC 1 cut(s) 64
GsuI CTGGAG 1 cut(s) 273
HaeIII GGCC 2 cut(s) 174, 358
HindIII AAGCTT 1 cut(s) 279
HinfI GANTC 6 cut(s) 449, 570, 586, 819, 920, 941
HphI GGTGA 3 cut(s) 209, 458, 617
Hpy188I TCNGA 5 cut(s) 43, 68, 306, 367, 790
Hpy188III TCNNGA 6 cut(s) 131, 137, 232, 495, 668, 898
HpyAV CCTTC 3 cut(s) 466, 520, 953
HpyCH4III ACNGT 1 cut(s) 801
HpyF10VI GCNNNNNNNGC 7 cut(s) 94, 122, 248, 404, 747, 792, 910
HpyF3I CTNAG 3 cut(s) 14, 715, 782
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 4 cut(s) 133, 325, 499, 882
LmnI GCTCC 2 cut(s) 309, 390
Lsp1109I GCAGC 2 cut(s) 134, 946
LweI GCATC 4 cut(s) 103, 130, 152, 854
MaeI CTAG 2 cut(s) 137, 468
MaeIII GTNAC 2 cut(s) 605, 655
MalI GATC 4 cut(s) 135, 327, 501, 884
MboI GATC 4 cut(s) 133, 325, 499, 882
MboII GAAGA 2 cut(s) 56, 206
MhlI GDGCHC 1 cut(s) 395
MlsI TGGCCA 1 cut(s) 174
MluCI AATT 6 cut(s) 197, 408, 614, 629, 651, 893
MluNI TGGCCA 1 cut(s) 174
MlyI GAGTC 2 cut(s) 579, 828
MmeI TCCRAC 1 cut(s) 404
Mox20I TGGCCA 1 cut(s) 174
Mph1103I ATGCAT 1 cut(s) 145
MroXI GAANNNNTTC 1 cut(s) 629
MscI TGGCCA 1 cut(s) 174
MseI TTAA 2 cut(s) 293, 539
MslI CAYNNNNRTG 1 cut(s) 878
Msp20I TGGCCA 1 cut(s) 174
MspA1I CMGCKG 2 cut(s) 251, 641
MwoI GCNNNNNNNGC 7 cut(s) 94, 122, 248, 404, 747, 792, 910
NcoI CCATGG 1 cut(s) 175
NdeII GATC 4 cut(s) 133, 325, 499, 882
NlaIV GGNNCC 2 cut(s) 357, 840
NmuCI GTSAC 2 cut(s) 605, 655
NsiI ATGCAT 1 cut(s) 145
NspI RCATGY 2 cut(s) 723, 745
PdmI GAANNNNTTC 1 cut(s) 629
PfeI GAWTC 4 cut(s) 449, 586, 920, 941
PflMI CCANNNNNTGG 2 cut(s) 386, 757
PkrI GCNGC 2 cut(s) 124, 936
PleI GAGTC 2 cut(s) 578, 827
PpsI GAGTC 2 cut(s) 578, 827
PspFI CCCAGC 1 cut(s) 60
PspN4I GGNNCC 2 cut(s) 357, 840
PspPI GGNCC 2 cut(s) 356, 377
PstNI CAGNNNCTG 1 cut(s) 757
PvuII CAGCTG 1 cut(s) 251
RseI CAYNNNNRTG 1 cut(s) 878
SaqAI TTAA 2 cut(s) 293, 539
SatI GCNGC 2 cut(s) 123, 935
Sau3AI GATC 4 cut(s) 133, 325, 499, 882
Sau96I GGNCC 2 cut(s) 356, 377
SchI GAGTC 2 cut(s) 579, 828
SduI GDGCHC 1 cut(s) 395
SfaNI GCATC 4 cut(s) 103, 130, 152, 854
SfcI CTRYAG 1 cut(s) 600
SinI GGWCC 1 cut(s) 377
SmiMI CAYNNNNRTG 1 cut(s) 878
SmlI CTYRAG 3 cut(s) 230, 515, 521
SmoI CTYRAG 3 cut(s) 230, 515, 521
Sse9I AATT 6 cut(s) 197, 408, 614, 629, 651, 893
SsiI CCGC 2 cut(s) 641, 926
SspMI CTAG 2 cut(s) 137, 468
StyI CCWWGG 1 cut(s) 175
TaaI ACNGT 1 cut(s) 801
TaqI TCGA 1 cut(s) 845
TasI AATT 6 cut(s) 197, 408, 614, 629, 651, 893
TfiI GAWTC 4 cut(s) 449, 586, 920, 941
Tru1I TTAA 2 cut(s) 293, 539
Tru9I TTAA 2 cut(s) 293, 539
TscAI CASTG 3 cut(s) 319, 379, 664
TseFI GTSAC 2 cut(s) 605, 655
TseI GCWGC 2 cut(s) 122, 934
Tsp45I GTSAC 2 cut(s) 605, 655
TspDTI ATGAA 2 cut(s) 252, 789
TspRI CASTG 3 cut(s) 319, 379, 664
Van91I CCANNNNNTGG 2 cut(s) 386, 757
VpaK11BI GGWCC 1 cut(s) 377
XapI RAATTY 3 cut(s) 197, 614, 629
XbaI TCTAGA 1 cut(s) 136
XceI RCATGY 2 cut(s) 723, 745
XmnI GAANNNNTTC 1 cut(s) 629
XspI CTAG 2 cut(s) 137, 468
Zsp2I ATGCAT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.