Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000743

Physical Location & Seq

Genomic Coordinates Reverse (-)

27902892 .. 27909338

Gene Structure 6447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1226200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAGTTTGATAATGTGGTTGCAACTGGAGATGGGAATATATCTCAGCGCTCCAAAAACTGATAAGGTCTCAGAAGATGGTGAGAATGACAGACTTCGATACGGTCTCAGAAGATGGAAGATGCTAGCGAGAAGAGGATTTTACATGAGTAGCTGGAAGTCGCATGCTGCTTATCCAGATTTTGACGGTTCAACATCTTTCTTTGGTGTTTATGATGGACATGGAGGTAAAGCAGTGGCAAATTTCTGCGCCAAGTATCTCCATCAACAGGTACTCAAGGATGAAGCATATCTAGCTGGCGATTTAGGCAGTTCTCTGCAGAAAGCTTTTCTCAGGATGGATGAGATGATGCGCGGACAAAGAGGCTGGAGAGAATTAGCTGTACTGGGAGATAAGATAGACAAAGTTTCTGGTCTTATAGAAAGGTTCATTTTATCTCCGAAGAGTGTTGAAGCTAAGAGTAGTGCATTCAATGACCATGTTGGTCAGTGGTCTTCTGAGGAGGGGCCTCATTCTGATTTTGATGGACCAAATTCTGGAAGTACAGATTGTGTTGCTATTATCCGGAACAAACAACTTGTTGTTGCCAATGCTGGTGATTCTCGCTGCGTAATATCCAGGAAGGGTGAGTGTAAGAGTTTGAGATTTCTTGTCCGGTCCCTTCTAAATTTTAGGGTACTTTCAAATCGTCTTTATCAAATTATAGAAGTGCTTGGAACTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

242

Amino Acids

27.12

Weight (kDa)

8.99

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	45 - 119	1e-06	Protein phosphatase 2C
PP2C	PF00481	176 - 212	2.8e-09	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25070 AT2G25070 AT4G31860 AT4G31860 AT4G31860
fragaria_vesca	FvH4_2g41182 FvH4_2g41201 FvH4_6g28470 FvH4_6g28470 FvH4_6g28470 FvH4_6g28470 FvH4_6g28470 FvH4_6g28470 FvH4_6g28470 FvH4_6g28470 FvH4_6g28470 FvH4_6g28470 FvH4_6g28470 FvH4_6g28470 FvH4_6g28470 FvH4_6g28470 FvH4_6g28470 FvH4_6g28470 FvH4_6g28470 FvH4_6g28470 FvH4_6g28470 FvH4_6g33081
malus_domestica	MD08G1055500.v1.1 MD08G1055600.v1.1 MD09G1226200.v1.1 MD15G1041900.v1.1 MD15G1042000.v1.1 MD17G1224700.v1.1
prunus_persica	Prupe.1G394800_v2.0.a1 Prupe.1G394800_v2.0.a1 Prupe.1G395000_v2.0.a1 Prupe.3G100500_v2.0.a1 Prupe.3G100500_v2.0.a1 Prupe.3G100500_v2.0.a1
pyrus_communis	pycom08g04560 pycom09g14540 pycom15g03860 pycom17g22840
rosa_chinensis	RchiOBHm_Chr2g0132691 RchiOBHm_Chr6g0299321 RchiOBHm_Chr6g0299331
rosa_laevigata	RLG00000011442 RLG00000019272
rosa_multiflora	Rmu_sc0011092.1_g000006 Rmu_ssc0000074.1_g000015
rosa_roxburghii	Rroxscaffold_2G00111730 Rroxscaffold_7G00168780 Rroxscaffold_7G00168800
rosa_rugosa	Rorug02G0306100 Rorug02G0306200 Rorug06G0287200 Rorug06G0287300 Rorug06G0287300
rosa_samantha	Rh2AG359100 Rh2CG342300 Rh2DG382300 Rh6AG398700 Rh6AG398800 Rh6BG407100 Rh6BG407200 Rh6CG413100 Rh6DG399900 Rh6DG400000
rosa_wichuraiana	Rw2G029230 Rw6G034900 Rw6G034910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	536
AccII	CGCG	1 cut(s)	354
AccIII	TCCGGA	1 cut(s)	564
AciI	CCGC	1 cut(s)	354
AcsI	RAATTY	3 cut(s)	241, 532, 667
AfaI	GTAC	4 cut(s)	273, 384, 544, 678
AfeI	AGCGCT	1 cut(s)	49
AfiI	CCNNNNNNNGG	2 cut(s)	268, 536
AgsI	TTSAA	4 cut(s)	192, 452, 472, 684
AjnI	CCWGG	1 cut(s)	617
AluBI	AGCT	5 cut(s)	153, 296, 326, 380, 455
AluI	AGCT	5 cut(s)	153, 296, 326, 380, 455
Alw26I	GTCTC	2 cut(s)	73, 110
Aor13HI	TCCGGA	1 cut(s)	564
Aor51HI	AGCGCT	1 cut(s)	49
AoxI	GGCC	1 cut(s)	506
ApeKI	GCWGC	2 cut(s)	167, 606
ApoI	RAATTY	3 cut(s)	241, 532, 667
AspLEI	GCGC	3 cut(s)	50, 251, 354
AspS9I	GGNCC	3 cut(s)	506, 527, 657
AsuHPI	GGTGA	3 cut(s)	92, 608, 638
AsuNHI	GCTAGC	1 cut(s)	124
AvaII	GGWCC	2 cut(s)	527, 657
BbsI	GAAGAC	1 cut(s)	486
BbvI	GCAGC	2 cut(s)	154, 593
BccI	CCATC	7 cut(s)	25, 71, 108, 209, 270, 331, 518
BciT130I	CCWGG	1 cut(s)	619
BcoDI	GTCTC	2 cut(s)	73, 110
BfaI	CTAG	2 cut(s)	125, 293
BfmI	CTRYAG	1 cut(s)	317
BfoI	RGCGCY	1 cut(s)	51
BisI	GCNGC	2 cut(s)	168, 607
BlsI	GCNGC	2 cut(s)	169, 608
Bme1390I	CCNGG	1 cut(s)	619
Bme18I	GGWCC	2 cut(s)	527, 657
BmgT120I	GGNCC	3 cut(s)	506, 527, 657
BmiI	GGNNCC	2 cut(s)	507, 659
BmrFI	CCNGG	1 cut(s)	619
BmrI	ACTGGG	1 cut(s)	395
BmsI	GCATC	2 cut(s)	111, 339
BmtI	GCTAGC	1 cut(s)	128
BmuI	ACTGGG	1 cut(s)	395
BpiI	GAAGAC	1 cut(s)	486
BpmI	CTGGAG	2 cut(s)	47, 388
BpuEI	CTTGAG	1 cut(s)	260
BsaI	GGTCTC	2 cut(s)	73, 110
BsaWI	WCCGGW	2 cut(s)	564, 654
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 536
Bse1I	ACTGG	2 cut(s)	30, 390
BseAI	TCCGGA	1 cut(s)	564
BseBI	CCWGG	1 cut(s)	619
BseGI	GGATG	3 cut(s)	286, 342, 346
BseLI	CCNNNNNNNGG	2 cut(s)	268, 536
BseMII	CTCAG	5 cut(s)	58, 84, 121, 346, 489
BseNI	ACTGG	2 cut(s)	30, 390
BseRI	GAGGAG	1 cut(s)	515
BseXI	GCAGC	2 cut(s)	154, 593
Bsh1236I	CGCG	1 cut(s)	354
BshFI	GGCC	1 cut(s)	508
BsiSI	CCGG	2 cut(s)	565, 655
BslFI	GGGAC	1 cut(s)	643
BslI	CCNNNNNNNGG	2 cut(s)	268, 536
BsmAI	GTCTC	2 cut(s)	73, 110
BsmFI	GGGAC	1 cut(s)	643
BsmI	GAATGC	1 cut(s)	467
BsnI	GGCC	1 cut(s)	508
Bso31I	GGTCTC	2 cut(s)	73, 110
Bsp13I	TCCGGA	1 cut(s)	564
BspACI	CCGC	1 cut(s)	354
BspANI	GGCC	1 cut(s)	508
BspCNI	CTCAG	5 cut(s)	57, 83, 120, 345, 490
BspEI	TCCGGA	1 cut(s)	564
BspFNI	CGCG	1 cut(s)	354
BspLI	GGNNCC	2 cut(s)	507, 659
BspMAI	CTGCAG	1 cut(s)	321
BspOI	GCTAGC	1 cut(s)	128
BspTNI	GGTCTC	2 cut(s)	73, 110
BsrI	ACTGG	2 cut(s)	30, 390
Bst2UI	CCWGG	1 cut(s)	619
Bst4CI	ACNGT	2 cut(s)	104, 188
Bst6I	CTCTTC	2 cut(s)	127, 437
BstC8I	GCNNGC	3 cut(s)	126, 165, 298
BstDEI	CTNAG	6 cut(s)	44, 70, 107, 332, 456, 498
BstF5I	GGATG	3 cut(s)	286, 342, 346
BstFNI	CGCG	1 cut(s)	354
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	3 cut(s)	50, 251, 354
BstMAI	GTCTC	2 cut(s)	73, 110
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 306
BstNI	CCWGG	1 cut(s)	619
BstNSI	RCATGY	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	617
BstSFI	CTRYAG	1 cut(s)	317
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	2 cut(s)	154, 593
BstV2I	GAAGAC	1 cut(s)	486
BsuRI	GGCC	1 cut(s)	508
BtsCI	GGATG	3 cut(s)	286, 342, 346
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	2 cut(s)	240, 494
Cac8I	GCNNGC	3 cut(s)	126, 165, 298
CfoI	GCGC	3 cut(s)	50, 251, 354
Cfr13I	GGNCC	3 cut(s)	506, 527, 657
Csp6I	GTAC	4 cut(s)	272, 383, 543, 677
CviAII	CATG	4 cut(s)	145, 164, 221, 479
CviJI	RGCY	7 cut(s)	153, 296, 326, 366, 380, 455, 508
CviKI_1	RGCY	7 cut(s)	153, 296, 326, 366, 380, 455, 508
CviQI	GTAC	4 cut(s)	272, 383, 543, 677
DdeI	CTNAG	6 cut(s)	44, 70, 107, 332, 456, 498
Eam1104I	CTCTTC	2 cut(s)	127, 437
EarI	CTCTTC	2 cut(s)	127, 437
Eco31I	GGTCTC	2 cut(s)	73, 110
Eco47I	GGWCC	2 cut(s)	527, 657
Eco47III	AGCGCT	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	506
EcoRII	CCWGG	1 cut(s)	617
FaeI	CATG	4 cut(s)	148, 167, 224, 482
FaqI	GGGAC	1 cut(s)	643
FatI	CATG	4 cut(s)	144, 163, 220, 478
Fnu4HI	GCNGC	2 cut(s)	168, 607
FokI	GGATG	3 cut(s)	293, 349, 353
Fsp4HI	GCNGC	2 cut(s)	168, 607
FspBI	CTAG	2 cut(s)	125, 293
GlaI	GCGC	3 cut(s)	49, 250, 353
GluI	GCNGC	2 cut(s)	168, 607
GsuI	CTGGAG	2 cut(s)	47, 388
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	508
HapII	CCGG	2 cut(s)	565, 655
HhaI	GCGC	3 cut(s)	50, 251, 354
Hin1II	CATG	4 cut(s)	148, 167, 224, 482
Hin6I	GCGC	3 cut(s)	48, 249, 352
HinP1I	GCGC	3 cut(s)	48, 249, 352
HindIII	AAGCTT	1 cut(s)	324
HinfI	GANTC	1 cut(s)	599
HpaII	CCGG	2 cut(s)	565, 655
HphI	GGTGA	3 cut(s)	92, 608, 638
Hpy188I	TCNGA	5 cut(s)	73, 110, 441, 499, 517
Hpy188III	TCNNGA	4 cut(s)	176, 334, 537, 565
HpyAV	CCTTC	2 cut(s)	616, 671
HpyCH4III	ACNGT	2 cut(s)	104, 188
HpyCH4V	TGCA	3 cut(s)	22, 319, 467
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 306
HpyF3I	CTNAG	6 cut(s)	44, 70, 107, 332, 456, 498
Hsp92II	CATG	4 cut(s)	148, 167, 224, 482
HspAI	GCGC	3 cut(s)	48, 249, 352
Kpn2I	TCCGGA	1 cut(s)	564
LmnI	GCTCC	1 cut(s)	55
Lsp1109I	GCAGC	2 cut(s)	154, 593
LweI	GCATC	2 cut(s)	111, 339
MaeI	CTAG	2 cut(s)	125, 293
MboII	GAAGA	6 cut(s)	86, 123, 130, 144, 454, 486
MluCI	AATT	5 cut(s)	241, 374, 532, 667, 699
MnlI	CCTC	6 cut(s)	128, 218, 356, 493, 496, 519
MroI	TCCGGA	1 cut(s)	564
MspI	CCGG	2 cut(s)	565, 655
MspR9I	CCNGG	1 cut(s)	619
Mva1269I	GAATGC	1 cut(s)	467
MvaI	CCWGG	1 cut(s)	619
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	2 cut(s)	293, 306
NheI	GCTAGC	1 cut(s)	124
NlaIII	CATG	4 cut(s)	148, 167, 224, 482
NlaIV	GGNNCC	2 cut(s)	507, 659
NspI	RCATGY	1 cut(s)	167
PaeI	GCATGC	1 cut(s)	167
PctI	GAATGC	1 cut(s)	467
PfeI	GAWTC	1 cut(s)	599
PflMI	CCANNNNNTGG	1 cut(s)	536
PfoI	TCCNGGA	1 cut(s)	617
PkrI	GCNGC	2 cut(s)	169, 608
Psp6I	CCWGG	1 cut(s)	617
PspGI	CCWGG	1 cut(s)	617
PspN4I	GGNNCC	2 cut(s)	507, 659
PspPI	GGNCC	3 cut(s)	506, 527, 657
PstI	CTGCAG	1 cut(s)	321
RsaI	GTAC	4 cut(s)	273, 384, 544, 678
RsaNI	GTAC	4 cut(s)	272, 383, 543, 677
SatI	GCNGC	2 cut(s)	168, 607
Sau96I	GGNCC	3 cut(s)	506, 527, 657
ScrFI	CCNGG	1 cut(s)	619
SetI	ASST	9 cut(s)	69, 155, 229, 273, 298, 328, 382, 428, 457
SfaNI	GCATC	2 cut(s)	111, 339
SfcI	CTRYAG	1 cut(s)	317
SinI	GGWCC	2 cut(s)	527, 657
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
SphI	GCATGC	1 cut(s)	167
Sse9I	AATT	5 cut(s)	241, 374, 532, 667, 699
SsiI	CCGC	1 cut(s)	354
SspMI	CTAG	2 cut(s)	125, 293
StyD4I	CCNGG	1 cut(s)	617
TaaI	ACNGT	2 cut(s)	104, 188
TaqI	TCGA	1 cut(s)	97
TasI	AATT	5 cut(s)	241, 374, 532, 667, 699
TatI	WGTACW	2 cut(s)	382, 542
TfiI	GAWTC	1 cut(s)	599
TscAI	CASTG	2 cut(s)	240, 494
TseI	GCWGC	2 cut(s)	167, 606
TspDTI	ATGAA	2 cut(s)	297, 418
TspRI	CASTG	2 cut(s)	240, 494
Van91I	CCANNNNNTGG	1 cut(s)	536
VpaK11BI	GGWCC	2 cut(s)	527, 657
XapI	RAATTY	3 cut(s)	241, 532, 667
XceI	RCATGY	1 cut(s)	167
XspI	CTAG	2 cut(s)	125, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.