pycom09g14540

protein phosphatase 2C 60

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
14217171 .. 14219138
1968 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g14540.3

Sequence Viewer

Length: 315 bp
ATGCAAGGGTGGCGTTCAACCATGGAAGATGCTCATGCTGCTTATCCAGATTTTGACGGTTCAACATCTTTCTTTGGTGTTTATGATGGACATGGAGGTAAAGCAGTGGCAAATTTCTGCGCCAAGTATCTCCATCGACAGGTACTCAAGGATGAAGCATATCTAGCTGGCGATTTAGGCATTTCTCTGCAGAAAGCTTTTCTCAGGATGGATGAGATGATGCACGGACAAAGAGGCTGGAGAGAATTAGCTGTACTGGGAGATAAGATAGACAAAGTTTCTGGTCTTATAGAAGGGTTCATTTTTTCTCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

105

Amino Acids

11.58

Weight (kDa)

5.71

Isoelectric Point (pI)

30.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 112
AfaI GTAC 2 cut(s) 144, 255
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 2 cut(s) 18, 63
AluBI AGCT 3 cut(s) 167, 197, 251
AluI AGCT 3 cut(s) 167, 197, 251
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 112
AspLEI GCGC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 25
BccI CCATC 3 cut(s) 80, 141, 202
BfaI CTAG 1 cut(s) 164
BfmI CTRYAG 1 cut(s) 188
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
BmrI ACTGGG 1 cut(s) 266
BmsI GCATC 2 cut(s) 19, 210
BmuI ACTGGG 1 cut(s) 266
BpmI CTGGAG 1 cut(s) 259
BpuEI CTTGAG 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse1I ACTGG 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 3 cut(s) 157, 213, 217
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 217
BseNI ACTGG 1 cut(s) 261
BseXI GCAGC 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 139
Bsp19I CCATGG 1 cut(s) 21
BspCNI CTCAG 1 cut(s) 216
BspMAI CTGCAG 1 cut(s) 192
BsrI ACTGG 1 cut(s) 261
BssECI CCNNGG 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 1 cut(s) 203
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 3 cut(s) 157, 213, 217
BstHHI GCGC 1 cut(s) 122
BstMWI GCNNNNNNNGC 4 cut(s) 10, 38, 164, 177
BstSFI CTRYAG 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 25
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 3 cut(s) 157, 213, 217
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 169
CfoI GCGC 1 cut(s) 122
Csp6I GTAC 2 cut(s) 143, 254
CviAII CATG 3 cut(s) 22, 35, 92
CviJI RGCY 4 cut(s) 167, 197, 237, 251
CviKI_1 RGCY 4 cut(s) 167, 197, 237, 251
CviQI GTAC 2 cut(s) 143, 254
DdeI CTNAG 1 cut(s) 203
Eco130I CCWWGG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 3 cut(s) 25, 38, 95
FaiI YATR 6 cut(s) 23, 36, 84, 93, 160, 290
FatI CATG 3 cut(s) 21, 34, 91
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 3 cut(s) 164, 220, 224
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 1 cut(s) 164
GlaI GCGC 1 cut(s) 121
GluI GCNGC 1 cut(s) 39
GsuI CTGGAG 1 cut(s) 259
HhaI GCGC 1 cut(s) 122
Hin1II CATG 3 cut(s) 25, 38, 95
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HindIII AAGCTT 1 cut(s) 195
Hpy188III TCNNGA 2 cut(s) 47, 205
HpyAV CCTTC 1 cut(s) 287
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4V TGCA 3 cut(s) 4, 190, 223
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 38, 164, 177
HpyF3I CTNAG 1 cut(s) 203
Hsp92II CATG 3 cut(s) 25, 38, 95
HspAI GCGC 1 cut(s) 120
LpnPI CCDG 7 cut(s) 60, 125, 153, 190, 223, 242, 267
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 2 cut(s) 19, 210
MaeI CTAG 1 cut(s) 164
MboII GAAGA 1 cut(s) 38
MluCI AATT 2 cut(s) 112, 245
MnlI CCTC 2 cut(s) 89, 227
MwoI GCNNNNNNNGC 4 cut(s) 10, 38, 164, 177
NcoI CCATGG 1 cut(s) 21
NlaIII CATG 3 cut(s) 25, 38, 95
PkrI GCNGC 1 cut(s) 40
PstI CTGCAG 1 cut(s) 192
RsaI GTAC 2 cut(s) 144, 255
RsaNI GTAC 2 cut(s) 143, 254
SatI GCNGC 1 cut(s) 39
SetI ASST 5 cut(s) 100, 144, 169, 199, 253
SfaNI GCATC 2 cut(s) 19, 210
SfcI CTRYAG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 2 cut(s) 112, 245
SspMI CTAG 1 cut(s) 164
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 59
TaqI TCGA 1 cut(s) 136
TasI AATT 2 cut(s) 112, 245
TatI WGTACW 1 cut(s) 253
TscAI CASTG 1 cut(s) 111
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 2 cut(s) 168, 289
TspGWI ACGGA 2 cut(s) 240, 300
TspRI CASTG 1 cut(s) 111
XapI RAATTY 1 cut(s) 112
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.