Rh6DG400000

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000743
Physical Location & Seq
Forward (+)
58936500 .. 58941983
5484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG400000.1

Sequence Viewer

Length: 873 bp
ATGCTCAAGAATGAAGCATATTCAGCTGGAGACATAGGAACTTCTGTTCAAAAAGCTTTTTTCAGAATGGATGAAATGATGCGTGGACAAAGGGGTTGGAGAGAGTTAGCTGTTCTGGGAGATAAGATAAACAAATTTACTGGCATGATAGAAGGGTTAATCTGGTCTCCGAGGAGCAGTGAGGGTAATGATCAAGCTGATGATTGGGCTTTTGAGGAGGGGCCTCACTCTGATTTCAGTGGTCCAACTTCTGGGAGCACAGCTTGTGTTGCAATTATTAGAAACAACCAACTTGTTGTTGCAAATGCTGGTGATTCTCGTTGTGTGATATCTAGGAAGGGTCAGGCATATAACCTGTCCAGAGATCACAAACCTGAACTTGAGCTTGAGAAGGAAAGGATTTTAAAAGCTGGTGGTTTTATCCATGCAGGACGAGTCAATGGCAGTTTGAATCTTGCAAGAGCTATAGGTGACATGGAATTCAAGCAGAATAAATTCTTGCCAGCGGAAAAGCAAATTGTCACTGCCAGTCCTGATATAAATACTGTTGAACTTTGTGATGATGATGAGTTTATGGTCTTAGCATGTGATGGTATCTGGGATTGCATGTCAAGCCAGCAACTGGTAGATTTTGTGCATGAACAGCTAAGCTCGGAAAGCAAACTGTCTGTGGTGGTTGAAAGAGTCCTTGACAAATGTTTGGCACCATCGACTGCTGGTGGGGAGGGATGCGATAACATGACCATGATCTTGGTGCAATTCAAGAAGCCCATTGTGCCAGTTGAATCTGCGGGCAAGCAGCAGGAATCCTCAACAACCGAAGAAGGAGGACCTGGAACGGATGCAAATCCAAGTGAAAGTGAATCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0033993 GO:0042221 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

290

Amino Acids

31.59

Weight (kDa)

4.73

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 78 - 238 1.3e-60 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 703
AccB7I CCANNNNNTGG 2 cut(s) 251, 622
AciI CCGC 2 cut(s) 506, 791
AcsI RAATTY 3 cut(s) 134, 479, 494
AfiI CCNNNNNNNGG 2 cut(s) 251, 622
AgsI TTSAA 7 cut(s) 50, 451, 484, 551, 680, 763, 785
AjnI CCWGG 1 cut(s) 832
AloI GAACNNNNNNTCC 2 cut(s) 30, 62
Alw21I GWGCWC 1 cut(s) 260
Alw26I GTCTC 2 cut(s) 24, 171
AlwNI CAGNNNCTG 1 cut(s) 622
AoxI GGCC 1 cut(s) 221
ApeKI GCWGC 1 cut(s) 799
ApoI RAATTY 3 cut(s) 134, 479, 494
Asp700I GAANNNNTTC 1 cut(s) 494
AspS9I GGNCC 3 cut(s) 221, 242, 830
AsuHPI GGTGA 2 cut(s) 323, 482
AvaII GGWCC 2 cut(s) 242, 830
BanI GGYRCC 1 cut(s) 703
Bbv12I GWGCWC 1 cut(s) 260
BbvI GCAGC 1 cut(s) 811
BccI CCATC 2 cut(s) 584, 715
BciT130I CCWGG 1 cut(s) 834
BclI TGATCA 1 cut(s) 190
BcoDI GTCTC 2 cut(s) 24, 171
BfaI CTAG 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 465
BisI GCNGC 1 cut(s) 800
BlpI GCTNAGC 1 cut(s) 647
BlsI GCNGC 1 cut(s) 801
Bme1390I CCNGG 1 cut(s) 834
Bme18I GGWCC 2 cut(s) 242, 830
BmgT120I GGNCC 3 cut(s) 221, 242, 830
BmiI GGNNCC 2 cut(s) 222, 705
BmrFI CCNGG 1 cut(s) 834
BmsI GCATC 3 cut(s) 69, 719, 832
BpmI CTGGAG 1 cut(s) 48
Bpu1102I GCTNAGC 1 cut(s) 647
BpuEI CTTGAG 2 cut(s) 401, 407
BsaBI GATNNNNATC 1 cut(s) 846
BsaI GGTCTC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 170
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 622
Bse1I ACTGG 4 cut(s) 145, 528, 627, 779
Bse8I GATNNNNATC 1 cut(s) 846
BseBI CCWGG 1 cut(s) 834
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 3 cut(s) 76, 734, 847
BseJI GATNNNNATC 1 cut(s) 846
BseLI CCNNNNNNNGG 2 cut(s) 251, 622
BseNI ACTGG 4 cut(s) 145, 528, 627, 779
BseRI GAGGAG 2 cut(s) 187, 230
BseXI GCAGC 1 cut(s) 811
BshFI GGCC 1 cut(s) 223
BshNI GGYRCC 1 cut(s) 703
BsiHKAI GWGCWC 1 cut(s) 260
BslI CCNNNNNNNGG 2 cut(s) 251, 622
BsmAI GTCTC 2 cut(s) 24, 171
BsnI GGCC 1 cut(s) 223
Bso31I GGTCTC 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 260
Bsp143I GATC 3 cut(s) 190, 364, 747
Bsp1720I GCTNAGC 1 cut(s) 647
BspACI CCGC 2 cut(s) 506, 791
BspANI GGCC 1 cut(s) 223
BspLI GGNNCC 2 cut(s) 222, 705
BspT107I GGYRCC 1 cut(s) 703
BspTNI GGTCTC 1 cut(s) 171
BsrI ACTGG 4 cut(s) 145, 528, 627, 779
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 3 cut(s) 190, 364, 747
Bst2UI CCWGG 1 cut(s) 834
Bst4CI ACNGT 2 cut(s) 547, 666
BstC8I GCNNGC 4 cut(s) 504, 617, 793, 797
BstDEI CTNAG 2 cut(s) 580, 647
BstF5I GGATG 3 cut(s) 76, 734, 847
BstKTI GATC 3 cut(s) 193, 367, 750
BstMAI GTCTC 2 cut(s) 24, 171
BstMBI GATC 3 cut(s) 190, 364, 747
BstMWI GCNNNNNNNGC 6 cut(s) 23, 269, 612, 643, 657, 775
BstNI CCWGG 1 cut(s) 834
BstNSI RCATGY 2 cut(s) 588, 610
BstSCI CCNGG 1 cut(s) 832
BstSFI CTRYAG 1 cut(s) 465
BstV1I GCAGC 1 cut(s) 811
BstXI CCANNNNNNTGG 1 cut(s) 751
BsuRI GGCC 1 cut(s) 223
BtsCI GGATG 3 cut(s) 76, 734, 847
BtsI GCAGTG 2 cut(s) 184, 522
BtsIMutI CAGTG 3 cut(s) 184, 244, 522
Cac8I GCNNGC 4 cut(s) 504, 617, 793, 797
CaiI CAGNNNCTG 1 cut(s) 622
Cfr13I GGNCC 3 cut(s) 221, 242, 830
CviAII CATG 8 cut(s) 145, 425, 475, 585, 607, 638, 739, 745
DdeI CTNAG 2 cut(s) 580, 647
DpnI GATC 3 cut(s) 192, 366, 749
DpnII GATC 3 cut(s) 190, 364, 747
DraI TTTAAA 1 cut(s) 405
Eco31I GGTCTC 1 cut(s) 171
Eco32I GATATC 1 cut(s) 330
Eco47I GGWCC 2 cut(s) 242, 830
EcoO109I RGGNCCY 2 cut(s) 221, 830
EcoRI GAATTC 1 cut(s) 479
EcoRII CCWGG 1 cut(s) 832
EcoRV GATATC 1 cut(s) 330
FaeI CATG 8 cut(s) 148, 428, 478, 588, 610, 641, 742, 748
FatI CATG 8 cut(s) 144, 424, 474, 584, 606, 637, 738, 744
FauI CCCGC 1 cut(s) 784
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 800
FokI GGATG 3 cut(s) 83, 741, 854
Fsp4HI GCNGC 1 cut(s) 800
FspBI CTAG 1 cut(s) 333
GluI GCNGC 1 cut(s) 800
GsuI CTGGAG 1 cut(s) 48
HaeIII GGCC 1 cut(s) 223
Hin1II CATG 8 cut(s) 148, 428, 478, 588, 610, 641, 742, 748
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 7 cut(s) 314, 435, 451, 684, 785, 806, 863
HphI GGTGA 2 cut(s) 323, 482
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 4 cut(s) 65, 171, 232, 655
Hpy188III TCNNGA 4 cut(s) 7, 360, 533, 763
Hpy8I GTNNAC 1 cut(s) 86
HpyAV CCTTC 4 cut(s) 146, 331, 385, 818
HpyCH4III ACNGT 2 cut(s) 547, 666
HpyCH4V TGCA 8 cut(s) 272, 302, 428, 458, 606, 637, 757, 845
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 269, 612, 643, 657, 775
HpyF3I CTNAG 2 cut(s) 580, 647
Hsp92II CATG 8 cut(s) 148, 428, 478, 588, 610, 641, 742, 748
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 3 cut(s) 190, 364, 747
LmnI GCTCC 2 cut(s) 174, 255
Lsp1109I GCAGC 1 cut(s) 811
LweI GCATC 3 cut(s) 69, 719, 832
MaeI CTAG 1 cut(s) 333
MaeIII GTNAC 2 cut(s) 470, 520
MalI GATC 3 cut(s) 192, 366, 749
MboI GATC 3 cut(s) 190, 364, 747
MboII GAAGA 1 cut(s) 833
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 7 cut(s) 134, 273, 479, 494, 516, 758, 868
MlyI GAGTC 2 cut(s) 444, 693
MmeI TCCRAC 2 cut(s) 77, 269
MnlI CCTC 8 cut(s) 165, 175, 208, 211, 234, 718, 820, 821
MroXI GAANNNNTTC 1 cut(s) 494
MseI TTAA 2 cut(s) 158, 404
MslI CAYNNNNRTG 1 cut(s) 743
MspA1I CMGCKG 2 cut(s) 26, 506
MspR9I CCNGG 1 cut(s) 834
MvaI CCWGG 1 cut(s) 834
MwoI GCNNNNNNNGC 6 cut(s) 23, 269, 612, 643, 657, 775
NdeII GATC 3 cut(s) 190, 364, 747
NlaIII CATG 8 cut(s) 148, 428, 478, 588, 610, 641, 742, 748
NlaIV GGNNCC 2 cut(s) 222, 705
NmuCI GTSAC 2 cut(s) 470, 520
NspI RCATGY 2 cut(s) 588, 610
PdmI GAANNNNTTC 1 cut(s) 494
PfeI GAWTC 5 cut(s) 314, 451, 785, 806, 863
PflMI CCANNNNNTGG 2 cut(s) 251, 622
PkrI GCNGC 1 cut(s) 801
PleI GAGTC 2 cut(s) 443, 692
PpsI GAGTC 2 cut(s) 443, 692
PpuMI RGGWCCY 1 cut(s) 830
Psp5II RGGWCCY 1 cut(s) 830
Psp6I CCWGG 1 cut(s) 832
PspGI CCWGG 1 cut(s) 832
PspN4I GGNNCC 2 cut(s) 222, 705
PspPI GGNCC 3 cut(s) 221, 242, 830
PspPPI RGGWCCY 1 cut(s) 830
PstNI CAGNNNCTG 1 cut(s) 622
PvuII CAGCTG 1 cut(s) 26
RseI CAYNNNNRTG 1 cut(s) 743
SaqAI TTAA 2 cut(s) 158, 404
SatI GCNGC 1 cut(s) 800
Sau3AI GATC 3 cut(s) 190, 364, 747
Sau96I GGNCC 3 cut(s) 221, 242, 830
SchI GAGTC 2 cut(s) 444, 693
ScrFI CCNGG 1 cut(s) 834
SduI GDGCHC 1 cut(s) 260
SfaNI GCATC 3 cut(s) 69, 719, 832
SfcI CTRYAG 1 cut(s) 465
SinI GGWCC 2 cut(s) 242, 830
SmiMI CAYNNNNRTG 1 cut(s) 743
SmlI CTYRAG 3 cut(s) 5, 380, 386
SmoI CTYRAG 3 cut(s) 5, 380, 386
Sse9I AATT 7 cut(s) 134, 273, 479, 494, 516, 758, 868
SsiI CCGC 2 cut(s) 506, 791
SspMI CTAG 1 cut(s) 333
StyD4I CCNGG 1 cut(s) 832
TaaI ACNGT 2 cut(s) 547, 666
TaqI TCGA 1 cut(s) 710
TasI AATT 7 cut(s) 134, 273, 479, 494, 516, 758, 868
TfiI GAWTC 5 cut(s) 314, 451, 785, 806, 863
Tru1I TTAA 2 cut(s) 158, 404
Tru9I TTAA 2 cut(s) 158, 404
TscAI CASTG 3 cut(s) 184, 244, 529
TseFI GTSAC 2 cut(s) 470, 520
TseI GCWGC 1 cut(s) 799
Tsp45I GTSAC 2 cut(s) 470, 520
TspDTI ATGAA 3 cut(s) 27, 87, 654
TspGWI ACGGA 1 cut(s) 854
TspRI CASTG 3 cut(s) 184, 244, 529
Van91I CCANNNNNTGG 2 cut(s) 251, 622
VpaK11BI GGWCC 2 cut(s) 242, 830
XapI RAATTY 3 cut(s) 134, 479, 494
XceI RCATGY 2 cut(s) 588, 610
XmnI GAANNNNTTC 1 cut(s) 494
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.