Rh2CG342300

protein phosphatase 2C 60

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000743
Physical Location & Seq
Forward (+)
45975046 .. 45982984
7939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG342300.1

Sequence Viewer

Length: 921 bp
ATGGAATTTACTCTCTTTTTTTCAATTTTTTTTTTTTTTTTTAGAAATCATGTGTTTGATTCTGTGTCCCAGCTGGAGATGGGAATATATCTGAGCGCTCCGAAAACCGATAAGGTGTCAGAAGATGGTGAGAATGATAGACTGCGATTTGGGGCTTCCTCCATGCAGGGGTGGCGTTCAACCATGGAAGATGCTCATGCTGCTTTTCCAGATCTCGACAATTCAACATCTTTCTTTGGTGTTTATGATGGTCATGGAGGTAAAGCGGTGGCAAATTTCTGTGCCAAGTATCTCCACTTACAAGTGCTCAACCAGGAAGCATATCTAGCTGGTGATTTAGGCACTTCCCTGCAGAAAGCTTTTCTCAGGATGGATGAGATGATGCGTGGACAGAGAGGATGGAGAGAACTAGCTGTATTGGGAGATAAGATAGACAAAGTTTCAGGCCTTATTGAAGGGTTCATCTTTTCTCCTAAGAGTGTTGAAGCTAAGAGAAGTGCATTCAATGATCAAATTGATCAGTGGTCTTCTGAGGAGGGGCCTCACTCTGATTTTGATGGACCAAACTCTGGAAGCACAGCTTGTGTTGCTATCATCCGAAACAATCAACTTCTTGTTGCCAATGCTGGTGATTCGCGTTGTGTAATATCGAGGAAGGGTCAGGCATATCCTTTGTCTAAAGATCATAAGCCTGACATTGAGAATGAGAAGGATAGAATTCTGAAGGCCGGTGGATTTATCCAAGTTGGACGAGTCAATGGAAGTTTGAACTTGGCAAGAGCGATTGGAGATGTGGAATTCAAGCAAAACAAACAATTGCCTGTTGAAAAGCAGATTGTAACTGCCAATCCAGATGTAACAAGTGTTGAGATTTGTGATGATGATGAGTTTCTTGTCATCGCTTGTGATGGGATATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

306

Amino Acids

33.97

Weight (kDa)

5.0

Isoelectric Point (pI)

34.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 49 - 130 3e-12 Protein phosphatase 2C
PP2C PF00481 162 - 306 2.8e-49 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 569
AccII CGCG 1 cut(s) 637
AciI CCGC 1 cut(s) 266
AcsI RAATTY 4 cut(s) 5, 274, 717, 797
AcuI CTGAAG 1 cut(s) 743
AfeI AGCGCT 1 cut(s) 97
AfiI CCNNNNNNNGG 2 cut(s) 168, 569
AgsI TTSAA 9 cut(s) 24, 180, 225, 455, 485, 505, 769, 802, 827
AjnI CCWGG 1 cut(s) 312
AluBI AGCT 6 cut(s) 73, 329, 359, 413, 488, 581
AluI AGCT 6 cut(s) 73, 329, 359, 413, 488, 581
Alw21I GWGCWC 1 cut(s) 309
Aor51HI AGCGCT 1 cut(s) 97
AoxI GGCC 3 cut(s) 445, 539, 726
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 4 cut(s) 5, 274, 717, 797
AspLEI GCGC 1 cut(s) 98
AspS9I GGNCC 2 cut(s) 539, 560
AsuHPI GGTGA 3 cut(s) 140, 344, 641
AvaII GGWCC 1 cut(s) 560
BbsI GAAGAC 1 cut(s) 519
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 187
BccI CCATC 7 cut(s) 73, 119, 242, 364, 393, 551, 902
BciT130I CCWGG 1 cut(s) 314
BclI TGATCA 2 cut(s) 508, 517
BfaI CTAG 2 cut(s) 326, 410
BfmI CTRYAG 1 cut(s) 350
BfoI RGCGCY 1 cut(s) 99
BglII AGATCT 1 cut(s) 211
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 1 cut(s) 314
Bme18I GGWCC 1 cut(s) 560
BmgT120I GGNCC 2 cut(s) 539, 560
BmiI GGNNCC 1 cut(s) 540
BmrFI CCNGG 1 cut(s) 314
BmsI GCATC 2 cut(s) 181, 372
BpiI GAAGAC 1 cut(s) 519
BpmI CTGGAG 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 183
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 569
Bse118I RCCGGY 1 cut(s) 728
BseBI CCWGG 1 cut(s) 314
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 4 cut(s) 375, 379, 404, 594
BseLI CCNNNNNNNGG 2 cut(s) 168, 569
BseMII CTCAG 3 cut(s) 83, 379, 522
BseRI GAGGAG 1 cut(s) 548
BseXI GCAGC 1 cut(s) 187
BseYI CCCAGC 1 cut(s) 69
Bsh1236I CGCG 1 cut(s) 637
BshFI GGCC 3 cut(s) 447, 541, 728
BsiHKAI GWGCWC 1 cut(s) 309
BsiSI CCGG 1 cut(s) 729
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 2 cut(s) 168, 569
BsmFI GGGAC 1 cut(s) 52
BsmI GAATGC 1 cut(s) 500
BsnI GGCC 3 cut(s) 447, 541, 728
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 4 cut(s) 211, 508, 517, 682
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 1 cut(s) 266
BspANI GGCC 3 cut(s) 447, 541, 728
BspCNI CTCAG 3 cut(s) 84, 378, 523
BspFNI CGCG 1 cut(s) 637
BspLI GGNNCC 1 cut(s) 540
BspMAI CTGCAG 1 cut(s) 354
BsrFI RCCGGY 1 cut(s) 728
BssAI RCCGGY 1 cut(s) 728
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 4 cut(s) 211, 508, 517, 682
BssT1I CCWWGG 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 314
BstDEI CTNAG 5 cut(s) 92, 365, 474, 489, 531
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 4 cut(s) 375, 379, 404, 594
BstFNI CGCG 1 cut(s) 637
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 4 cut(s) 214, 511, 520, 685
BstMBI GATC 4 cut(s) 211, 508, 517, 682
BstMWI GCNNNNNNNGC 4 cut(s) 172, 200, 326, 587
BstNI CCWGG 1 cut(s) 314
BstSCI CCNGG 1 cut(s) 312
BstSFI CTRYAG 1 cut(s) 350
BstUI CGCG 1 cut(s) 637
BstV1I GCAGC 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 519
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BsuRI GGCC 3 cut(s) 447, 541, 728
BtgI CCRYGG 1 cut(s) 183
BtgZI GCGATG 1 cut(s) 883
BtsCI GGATG 4 cut(s) 375, 379, 404, 594
BtsIMutI CAGTG 1 cut(s) 527
CfoI GCGC 1 cut(s) 98
Cfr10I RCCGGY 1 cut(s) 728
Cfr13I GGNCC 2 cut(s) 539, 560
CviAII CATG 5 cut(s) 50, 163, 184, 197, 254
DdeI CTNAG 5 cut(s) 92, 365, 474, 489, 531
DpnI GATC 4 cut(s) 213, 510, 519, 684
DpnII GATC 4 cut(s) 211, 508, 517, 682
Eco130I CCWWGG 1 cut(s) 183
Eco147I AGGCCT 1 cut(s) 447
Eco47I GGWCC 1 cut(s) 560
Eco47III AGCGCT 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 743
EcoO109I RGGNCCY 1 cut(s) 539
EcoRI GAATTC 2 cut(s) 717, 797
EcoRII CCWGG 1 cut(s) 312
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 5 cut(s) 53, 166, 187, 200, 257
FalI AAGNNNNNCTT 2 cut(s) 565, 597
FaqI GGGAC 1 cut(s) 52
FatI CATG 5 cut(s) 49, 162, 183, 196, 253
FbaI TGATCA 2 cut(s) 508, 517
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 4 cut(s) 382, 386, 411, 581
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 2 cut(s) 326, 410
GlaI GCGC 1 cut(s) 97
GluI GCNGC 1 cut(s) 201
GsaI CCCAGC 1 cut(s) 73
GsuI CTGGAG 1 cut(s) 95
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 3 cut(s) 447, 541, 728
HapII CCGG 1 cut(s) 729
HhaI GCGC 1 cut(s) 98
Hin1II CATG 5 cut(s) 53, 166, 187, 200, 257
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HindIII AAGCTT 1 cut(s) 357
HinfI GANTC 3 cut(s) 59, 632, 753
HpaII CCGG 1 cut(s) 729
HphI GGTGA 3 cut(s) 140, 344, 641
Hpy166II GTNNAC 1 cut(s) 389
Hpy188I TCNGA 7 cut(s) 93, 102, 121, 532, 550, 599, 723
Hpy188III TCNNGA 5 cut(s) 209, 215, 367, 570, 851
Hpy8I GTNNAC 1 cut(s) 389
HpyAV CCTTC 4 cut(s) 449, 649, 703, 718
HpyCH4V TGCA 3 cut(s) 166, 352, 500
HpyF10VI GCNNNNNNNGC 4 cut(s) 172, 200, 326, 587
HpyF3I CTNAG 5 cut(s) 92, 365, 474, 489, 531
Hsp92II CATG 5 cut(s) 53, 166, 187, 200, 257
HspAI GCGC 1 cut(s) 96
Ksp22I TGATCA 2 cut(s) 508, 517
Kzo9I GATC 4 cut(s) 211, 508, 517, 682
LmnI GCTCC 1 cut(s) 103
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 2 cut(s) 181, 372
MaeI CTAG 2 cut(s) 326, 410
MaeIII GTNAC 2 cut(s) 838, 856
MalI GATC 4 cut(s) 213, 510, 519, 684
MboI GATC 4 cut(s) 211, 508, 517, 682
MboII GAAGA 3 cut(s) 134, 200, 519
MfeI CAATTG 1 cut(s) 815
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 8 cut(s) 5, 24, 220, 274, 513, 717, 797, 815
MlyI GAGTC 1 cut(s) 762
MmeI TCCRAC 1 cut(s) 727
MnlI CCTC 7 cut(s) 169, 251, 389, 526, 529, 552, 645
MspA1I CMGCKG 1 cut(s) 73
MspI CCGG 1 cut(s) 729
MspR9I CCNGG 1 cut(s) 314
MunI CAATTG 1 cut(s) 815
Mva1269I GAATGC 1 cut(s) 500
MvaI CCWGG 1 cut(s) 314
MvnI CGCG 1 cut(s) 637
MwoI GCNNNNNNNGC 4 cut(s) 172, 200, 326, 587
NcoI CCATGG 1 cut(s) 183
NdeII GATC 4 cut(s) 211, 508, 517, 682
NlaIII CATG 5 cut(s) 53, 166, 187, 200, 257
NlaIV GGNNCC 1 cut(s) 540
PceI AGGCCT 1 cut(s) 447
PctI GAATGC 1 cut(s) 500
PfeI GAWTC 2 cut(s) 59, 632
PflMI CCANNNNNTGG 1 cut(s) 569
PkrI GCNGC 1 cut(s) 202
PleI GAGTC 1 cut(s) 761
PpsI GAGTC 1 cut(s) 761
Psp6I CCWGG 1 cut(s) 312
PspFI CCCAGC 1 cut(s) 69
PspGI CCWGG 1 cut(s) 312
PspN4I GGNNCC 1 cut(s) 540
PspPI GGNCC 2 cut(s) 539, 560
PstI CTGCAG 1 cut(s) 354
PsuI RGATCY 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 73
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 4 cut(s) 211, 508, 517, 682
Sau96I GGNCC 2 cut(s) 539, 560
SchI GAGTC 1 cut(s) 762
ScrFI CCNGG 1 cut(s) 314
SduI GDGCHC 1 cut(s) 309
SetI ASST 8 cut(s) 75, 117, 262, 331, 361, 415, 490, 583
SfaNI GCATC 2 cut(s) 181, 372
SfcI CTRYAG 1 cut(s) 350
SinI GGWCC 1 cut(s) 560
Sse9I AATT 8 cut(s) 5, 24, 220, 274, 513, 717, 797, 815
SseBI AGGCCT 1 cut(s) 447
SsiI CCGC 1 cut(s) 266
SspMI CTAG 2 cut(s) 326, 410
StuI AGGCCT 1 cut(s) 447
StyD4I CCNGG 1 cut(s) 312
StyI CCWWGG 1 cut(s) 183
TaqI TCGA 2 cut(s) 216, 650
TasI AATT 8 cut(s) 5, 24, 220, 274, 513, 717, 797, 815
TfiI GAWTC 2 cut(s) 59, 632
TscAI CASTG 1 cut(s) 527
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 451
TspRI CASTG 1 cut(s) 527
Van91I CCANNNNNTGG 1 cut(s) 569
VpaK11BI GGWCC 1 cut(s) 560
XapI RAATTY 4 cut(s) 5, 274, 717, 797
XspI CTAG 2 cut(s) 326, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.