Rh6AG398800

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000743
Physical Location & Seq
Forward (+)
59678370 .. 59684591
6222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG398800.1

Sequence Viewer

Length: 1377 bp
ATGCCATCGTCTGTCGGCGTGTTTCTTCGAAAGCCTTGCACACGCTTGCACCCAGACACTGTTGCCTGCTTGTTGGTCGGTGTCCTCGTTGGTGATAGGTTTCGTTTTGACTTACCTACATCTACACAGATCTGGGCTTCTCTTTGTGTGGTGTGGACTTGTGTTACTAGAAGGAGACATGGGATTGGGTGCAGCTCTGGTTTCCTTGTCTCCGATTTCGATCTTGAGCTCTTCTCTGCGGCCTCGCCTCGACTCGACTCGACTCTCATATCATATTGGAATATGGGTATATATCTCAGCACCCCCAAAACTGACAAGTTCTCTGAAGATGGAGAGAATGACTGGGTCAGATATGGCTTATCGTCCATGCAAGGATGGCGTGCAACTATGGAGGATGCTCATGCAGCATATCCCGATCTAGATGCATCCACCTCGTTCTTTGGTGTTTATGATGGCCATGGAGGAAAGGTAGTTGCTAAATTCTGTGCCAAATATCTTCACCGACAAATGCTCAAGAATGAAGCATATGCAGCTGGAGACATAGGAACTTCTGTTCAAAAAGCTTTTTTCAGAATGGATGAAATGATGCGCGGACAAAGGGGTTGGAGAGAGTTAGCTGTTCTGGGAGATAAGATAAACAAATTTACTGGCATGATAGAAGGTTTAATCTGGTCTCCGAGGAGCAGTGAGGGTAATGATCAAGCTGATGATTGGGCTTTTGAGGAGGGGCCTCACTCTGATTTCAGTGGTCCAACTTCTGGGAGCACAGCTTGTGTTGCAATTATTAGAAACAACCAACTTGTTGTTGCAAATGCTGGTGATTCTCGTTGTGTGATATCTAGGAAGGGTCAGGCATATAACCTGTCCAGAGATCACAAACCTGAACTTGAGCTTGAGAAGGAAAGGATTTTAAAAGCTGGTGGTTTTATCCATGCAGGACGAGTCAATGGCAGTTTGAATCTTGCAAGAGCTATAGGTGACATGGAATTCAAGCAGAATAAATTCCTGCCAGCGGAAAAGCAAATTGTCACTGCCAGTCCTGATATAAATGCTGTTGAACTTTGTGATGATGATGAGTTTATGGTCTTAGCATGTGATGGTATCTGGGATTGCATGTCAAGCCAGCAACTGGTAGATTTTGTGCATGAACAGCTAAGCTCGGAAAGCAAACTGTCTGTGGTGGTTGAAAGAGTCCTTGACAAATGTTTGGCACCATCGACTGCTGGTGGGGAGGGATGCGATAACATGACCATGATCTTGGTGCAATTCAAGAAGCCTATTGTGCCAGTTGAATCTGCGGGTAAGCAGCAGGAATCCTCAACAACCGAAGAAGGACCTGGAACGGATGCAAATCCAAGTGAAAGTGAATCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0033993 GO:0042221 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

458

Amino Acids

50.31

Weight (kDa)

5.1

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 117 - 198 1.9e-10 Protein phosphatase 2C
PP2C PF00481 247 - 407 7.7e-60 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1210
AccB7I CCANNNNNTGG 2 cut(s) 758, 1129
AccII CGCG 1 cut(s) 591
AciI CCGC 4 cut(s) 239, 591, 1013, 1298
AcoI YGGCCR 1 cut(s) 454
AcsI RAATTY 4 cut(s) 479, 641, 986, 1001
AcuI CTGAAG 1 cut(s) 345
AfiI CCNNNNNNNGG 3 cut(s) 758, 1012, 1129
AgsI TTSAA 7 cut(s) 557, 958, 991, 1058, 1187, 1270, 1292
AjnI CCWGG 1 cut(s) 1336
AloI GAACNNNNNNTCC 2 cut(s) 537, 569
Alw21I GWGCWC 2 cut(s) 231, 767
Alw26I GTCTC 4 cut(s) 169, 214, 531, 678
AlwNI CAGNNNCTG 2 cut(s) 59, 1129
AoxI GGCC 3 cut(s) 240, 454, 728
ApeKI GCWGC 4 cut(s) 192, 404, 530, 1306
ApoI RAATTY 4 cut(s) 479, 641, 986, 1001
Asp700I GAANNNNTTC 1 cut(s) 1001
AspLEI GCGC 1 cut(s) 591
AspS9I GGNCC 3 cut(s) 728, 749, 1334
AsuHPI GGTGA 4 cut(s) 104, 491, 830, 989
AsuII TTCGAA 1 cut(s) 28
AvaII GGWCC 2 cut(s) 749, 1334
BalI TGGCCA 1 cut(s) 456
BanI GGYRCC 1 cut(s) 1210
BanII GRGCYC 1 cut(s) 231
Bbv12I GWGCWC 2 cut(s) 231, 767
BbvI GCAGC 4 cut(s) 204, 416, 542, 1318
BccI CCATC 6 cut(s) 13, 323, 369, 446, 1091, 1222
BcgI CGANNNNNNTGC 6 cut(s) 18, 52, 404, 414, 438, 448
BciT130I CCWGG 1 cut(s) 1338
BclI TGATCA 1 cut(s) 697
BcoDI GTCTC 4 cut(s) 169, 214, 531, 678
BfaI CTAG 3 cut(s) 168, 419, 840
BfmI CTRYAG 1 cut(s) 972
BglII AGATCT 1 cut(s) 129
BisI GCNGC 5 cut(s) 193, 240, 405, 531, 1307
BlpI GCTNAGC 1 cut(s) 1154
BlsI GCNGC 5 cut(s) 194, 241, 406, 532, 1308
Bme1390I CCNGG 1 cut(s) 1338
Bme18I GGWCC 2 cut(s) 749, 1334
BmgT120I GGNCC 3 cut(s) 728, 749, 1334
BmiI GGNNCC 2 cut(s) 729, 1212
BmrFI CCNGG 1 cut(s) 1338
BmrI ACTGGG 1 cut(s) 352
BmsI GCATC 6 cut(s) 385, 412, 434, 576, 1226, 1336
BmuI ACTGGG 1 cut(s) 352
BplI GAGNNNNNCTC 2 cut(s) 218, 250
BpmI CTGGAG 1 cut(s) 555
Bpu1102I GCTNAGC 1 cut(s) 1154
Bpu14I TTCGAA 1 cut(s) 28
BpuEI CTTGAG 4 cut(s) 245, 497, 908, 914
BsaBI GATNNNNATC 2 cut(s) 219, 1350
BsaI GGTCTC 1 cut(s) 678
BsaJI CCNNGG 2 cut(s) 457, 677
BsaXI ACNNNNNCTCC 2 cut(s) 453, 483
Bsc4I CCNNNNNNNGG 3 cut(s) 758, 1012, 1129
Bse1I ACTGG 5 cut(s) 347, 652, 1035, 1134, 1286
Bse8I GATNNNNATC 2 cut(s) 219, 1350
BseBI CCWGG 1 cut(s) 1338
BseDI CCNNGG 2 cut(s) 457, 677
BseGI GGATG 6 cut(s) 380, 400, 425, 583, 1241, 1351
BseJI GATNNNNATC 2 cut(s) 219, 1350
BseLI CCNNNNNNNGG 3 cut(s) 758, 1012, 1129
BseMII CTCAG 1 cut(s) 310
BseNI ACTGG 5 cut(s) 347, 652, 1035, 1134, 1286
BseRI GAGGAG 2 cut(s) 694, 737
BseXI GCAGC 4 cut(s) 204, 416, 542, 1318
BsgI GTGCAG 1 cut(s) 211
Bsh1236I CGCG 1 cut(s) 591
BshFI GGCC 3 cut(s) 242, 456, 730
BshNI GGYRCC 1 cut(s) 1210
BsiHKAI GWGCWC 2 cut(s) 231, 767
BslI CCNNNNNNNGG 3 cut(s) 758, 1012, 1129
BsmAI GTCTC 4 cut(s) 169, 214, 531, 678
BsnI GGCC 3 cut(s) 242, 456, 730
Bso31I GGTCTC 1 cut(s) 678
Bsp119I TTCGAA 1 cut(s) 28
Bsp1286I GDGCHC 2 cut(s) 231, 767
Bsp143I GATC 6 cut(s) 129, 220, 415, 697, 871, 1254
Bsp1720I GCTNAGC 1 cut(s) 1154
Bsp19I CCATGG 1 cut(s) 457
BspACI CCGC 4 cut(s) 239, 591, 1013, 1298
BspANI GGCC 3 cut(s) 242, 456, 730
BspCNI CTCAG 1 cut(s) 309
BspFNI CGCG 1 cut(s) 591
BspLI GGNNCC 2 cut(s) 729, 1212
BspQI GCTCTTC 1 cut(s) 236
BspT104I TTCGAA 1 cut(s) 28
BspT107I GGYRCC 1 cut(s) 1210
BspTNI GGTCTC 1 cut(s) 678
BsrI ACTGG 5 cut(s) 347, 652, 1035, 1134, 1286
BssECI CCNNGG 2 cut(s) 457, 677
BssMI GATC 6 cut(s) 129, 220, 415, 697, 871, 1254
BssT1I CCWWGG 1 cut(s) 457
Bst2UI CCWGG 1 cut(s) 1338
Bst4CI ACNGT 2 cut(s) 61, 1173
Bst6I CTCTTC 1 cut(s) 236
BstBI TTCGAA 1 cut(s) 28
BstC8I GCNNGC 5 cut(s) 47, 67, 381, 1011, 1124
BstDEI CTNAG 3 cut(s) 296, 1087, 1154
BstDSI CCRYGG 1 cut(s) 457
BstF5I GGATG 6 cut(s) 380, 400, 425, 583, 1241, 1351
BstFNI CGCG 1 cut(s) 591
BstHHI GCGC 1 cut(s) 591
BstKTI GATC 6 cut(s) 132, 223, 418, 700, 874, 1257
BstMAI GTCTC 4 cut(s) 169, 214, 531, 678
BstMBI GATC 6 cut(s) 129, 220, 415, 697, 871, 1254
BstMWI GCNNNNNNNGC 8 cut(s) 376, 404, 530, 776, 1119, 1150, 1164, 1282
BstNI CCWGG 1 cut(s) 1338
BstNSI RCATGY 2 cut(s) 1095, 1117
BstSCI CCNGG 1 cut(s) 1336
BstSFI CTRYAG 1 cut(s) 972
BstUI CGCG 1 cut(s) 591
BstV1I GCAGC 4 cut(s) 204, 416, 542, 1318
BstX2I RGATCY 1 cut(s) 129
BstXI CCANNNNNNTGG 1 cut(s) 1258
BstYI RGATCY 1 cut(s) 129
BsuRI GGCC 3 cut(s) 242, 456, 730
BtgI CCRYGG 1 cut(s) 457
BtsCI GGATG 6 cut(s) 380, 400, 425, 583, 1241, 1351
BtsI GCAGTG 2 cut(s) 691, 1029
BtsIMutI CAGTG 4 cut(s) 57, 691, 751, 1029
Cac8I GCNNGC 5 cut(s) 47, 67, 381, 1011, 1124
CaiI CAGNNNCTG 2 cut(s) 59, 1129
CfoI GCGC 1 cut(s) 591
Cfr13I GGNCC 3 cut(s) 728, 749, 1334
DdeI CTNAG 3 cut(s) 296, 1087, 1154
DpnI GATC 6 cut(s) 131, 222, 417, 699, 873, 1256
DpnII GATC 6 cut(s) 129, 220, 415, 697, 871, 1254
DraI TTTAAA 1 cut(s) 912
EaeI YGGCCR 1 cut(s) 454
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 457
Eco24I GRGCYC 1 cut(s) 231
Eco31I GGTCTC 1 cut(s) 678
Eco32I GATATC 1 cut(s) 837
Eco47I GGWCC 2 cut(s) 749, 1334
Eco53kI GAGCTC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 345
EcoICRI GAGCTC 1 cut(s) 229
EcoO109I RGGNCCY 2 cut(s) 728, 1334
EcoRI GAATTC 1 cut(s) 986
EcoRII CCWGG 1 cut(s) 1336
EcoRV GATATC 1 cut(s) 837
EcoT14I CCWWGG 1 cut(s) 457
EcoT22I ATGCAT 1 cut(s) 427
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 457
FauI CCCGC 1 cut(s) 1291
FauNDI CATATG 1 cut(s) 526
FbaI TGATCA 1 cut(s) 697
Fnu4HI GCNGC 5 cut(s) 193, 240, 405, 531, 1307
FokI GGATG 6 cut(s) 387, 407, 412, 590, 1248, 1358
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 5 cut(s) 193, 240, 405, 531, 1307
FspBI CTAG 3 cut(s) 168, 419, 840
GlaI GCGC 1 cut(s) 590
GluI GCNGC 5 cut(s) 193, 240, 405, 531, 1307
GsuI CTGGAG 1 cut(s) 555
HaeIII GGCC 3 cut(s) 242, 456, 730
HhaI GCGC 1 cut(s) 591
Hin6I GCGC 1 cut(s) 589
HinP1I GCGC 1 cut(s) 589
HindIII AAGCTT 1 cut(s) 561
HphI GGTGA 4 cut(s) 104, 491, 830, 989
Hpy166II GTNNAC 1 cut(s) 156
Hpy188I TCNGA 7 cut(s) 214, 325, 350, 572, 678, 739, 1162
Hpy188III TCNNGA 7 cut(s) 224, 413, 419, 514, 867, 1040, 1270
Hpy8I GTNNAC 1 cut(s) 156
HpyAV CCTTC 5 cut(s) 165, 653, 838, 892, 1325
HpyCH4III ACNGT 2 cut(s) 61, 1173
HpyF10VI GCNNNNNNNGC 8 cut(s) 376, 404, 530, 776, 1119, 1150, 1164, 1282
HpyF3I CTNAG 3 cut(s) 296, 1087, 1154
HspAI GCGC 1 cut(s) 589
Ksp22I TGATCA 1 cut(s) 697
Kzo9I GATC 6 cut(s) 129, 220, 415, 697, 871, 1254
LguI GCTCTTC 1 cut(s) 236
LmnI GCTCC 2 cut(s) 681, 762
Lsp1109I GCAGC 4 cut(s) 204, 416, 542, 1318
LweI GCATC 6 cut(s) 385, 412, 434, 576, 1226, 1336
MaeI CTAG 3 cut(s) 168, 419, 840
MaeIII GTNAC 3 cut(s) 163, 977, 1027
MalI GATC 6 cut(s) 131, 222, 417, 699, 873, 1256
MboI GATC 6 cut(s) 129, 220, 415, 697, 871, 1254
MboII GAAGA 5 cut(s) 17, 223, 338, 488, 1340
MflI RGATCY 1 cut(s) 129
MhlI GDGCHC 2 cut(s) 231, 767
MlsI TGGCCA 1 cut(s) 456
MluCI AATT 8 cut(s) 479, 641, 780, 986, 1001, 1023, 1265, 1372
MluNI TGGCCA 1 cut(s) 456
MlyI GAGTC 5 cut(s) 246, 251, 256, 951, 1200
MmeI TCCRAC 2 cut(s) 584, 776
Mox20I TGGCCA 1 cut(s) 456
Mph1103I ATGCAT 1 cut(s) 427
MroXI GAANNNNTTC 1 cut(s) 1001
MscI TGGCCA 1 cut(s) 456
MseI TTAA 2 cut(s) 665, 911
MslI CAYNNNNRTG 1 cut(s) 1250
Msp20I TGGCCA 1 cut(s) 456
MspA1I CMGCKG 2 cut(s) 533, 1013
MspR9I CCNGG 1 cut(s) 1338
MvaI CCWGG 1 cut(s) 1338
MvnI CGCG 1 cut(s) 591
MwoI GCNNNNNNNGC 8 cut(s) 376, 404, 530, 776, 1119, 1150, 1164, 1282
NcoI CCATGG 1 cut(s) 457
NdeI CATATG 1 cut(s) 526
NdeII GATC 6 cut(s) 129, 220, 415, 697, 871, 1254
NlaIV GGNNCC 2 cut(s) 729, 1212
NmuCI GTSAC 2 cut(s) 977, 1027
NsiI ATGCAT 1 cut(s) 427
NspI RCATGY 2 cut(s) 1095, 1117
NspV TTCGAA 1 cut(s) 28
PciSI GCTCTTC 1 cut(s) 236
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 1001
PfeI GAWTC 5 cut(s) 821, 958, 1292, 1313, 1367
PflFI GACNNNGTC 1 cut(s) 344
PflMI CCANNNNNTGG 2 cut(s) 758, 1129
PkrI GCNGC 5 cut(s) 194, 241, 406, 532, 1308
PleI GAGTC 5 cut(s) 246, 251, 256, 950, 1199
PpsI GAGTC 5 cut(s) 246, 251, 256, 950, 1199
PpuMI RGGWCCY 1 cut(s) 1334
Psp124BI GAGCTC 1 cut(s) 231
Psp5II RGGWCCY 1 cut(s) 1334
Psp6I CCWGG 1 cut(s) 1336
PspGI CCWGG 1 cut(s) 1336
PspN4I GGNNCC 2 cut(s) 729, 1212
PspPI GGNCC 3 cut(s) 728, 749, 1334
PspPPI RGGWCCY 1 cut(s) 1334
PstNI CAGNNNCTG 2 cut(s) 59, 1129
PsuI RGATCY 1 cut(s) 129
PsyI GACNNNGTC 1 cut(s) 344
PvuII CAGCTG 1 cut(s) 533
RseI CAYNNNNRTG 1 cut(s) 1250
SacI GAGCTC 1 cut(s) 231
SapI GCTCTTC 1 cut(s) 236
SaqAI TTAA 2 cut(s) 665, 911
SatI GCNGC 5 cut(s) 193, 240, 405, 531, 1307
Sau3AI GATC 6 cut(s) 129, 220, 415, 697, 871, 1254
Sau96I GGNCC 3 cut(s) 728, 749, 1334
SchI GAGTC 5 cut(s) 246, 251, 256, 951, 1200
ScrFI CCNGG 1 cut(s) 1338
SduI GDGCHC 2 cut(s) 231, 767
SfaNI GCATC 6 cut(s) 385, 412, 434, 576, 1226, 1336
SfcI CTRYAG 1 cut(s) 972
SfuI TTCGAA 1 cut(s) 28
SinI GGWCC 2 cut(s) 749, 1334
SmiMI CAYNNNNRTG 1 cut(s) 1250
SmlI CTYRAG 4 cut(s) 224, 512, 887, 893
SmoI CTYRAG 4 cut(s) 224, 512, 887, 893
Sse9I AATT 8 cut(s) 479, 641, 780, 986, 1001, 1023, 1265, 1372
SsiI CCGC 4 cut(s) 239, 591, 1013, 1298
SspMI CTAG 3 cut(s) 168, 419, 840
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 1336
StyI CCWWGG 1 cut(s) 457
TaaI ACNGT 2 cut(s) 61, 1173
TaqI TCGA 6 cut(s) 28, 219, 250, 255, 260, 1217
TasI AATT 8 cut(s) 479, 641, 780, 986, 1001, 1023, 1265, 1372
TauI GCSGC 1 cut(s) 242
TfiI GAWTC 5 cut(s) 821, 958, 1292, 1313, 1367
Tru1I TTAA 2 cut(s) 665, 911
Tru9I TTAA 2 cut(s) 665, 911
TscAI CASTG 4 cut(s) 64, 691, 751, 1036
TseFI GTSAC 2 cut(s) 977, 1027
TseI GCWGC 4 cut(s) 192, 404, 530, 1306
Tsp45I GTSAC 2 cut(s) 977, 1027
TspDTI ATGAA 3 cut(s) 534, 594, 1161
TspGWI ACGGA 1 cut(s) 1358
TspRI CASTG 4 cut(s) 64, 691, 751, 1036
Tth111I GACNNNGTC 1 cut(s) 344
Van91I CCANNNNNTGG 2 cut(s) 758, 1129
VpaK11BI GGWCC 2 cut(s) 749, 1334
XapI RAATTY 4 cut(s) 479, 641, 986, 1001
XbaI TCTAGA 1 cut(s) 418
XceI RCATGY 2 cut(s) 1095, 1117
XmnI GAANNNNTTC 1 cut(s) 1001
XspI CTAG 3 cut(s) 168, 419, 840
Zsp2I ATGCAT 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.