Prupe.1G394800_v2.0.a1

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000743
Physical Location & Seq
Reverse (-)
35077071 .. 35082469
5399 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G394800.2

Sequence Viewer

Length: 1101 bp
ATGGGTATATATCTCAGCACTCCCAAAACTGAAAAGTTCTCTGAAGATGGTGAGAATGGCCGGGTCAGATATGGTTTGTCATCAATGCAAGGATGGCGTGCCACCATGGAGGATGCCCATGCAGCATATCCTGATCTCGATACATCCACCTCATTCTTTGGTGTTTATGATGGCCATGGAGGTAAGGTAGTTGCTAAATTCTGTGCAAAGTATCTTCACCGACAAGTGCTCAAGAATGAAGCATATGCGGCTGGAGATATAGGAACTTCTGTTCAAAAAGCTTTTTTCAGAATGGATGAAATGATGCGTGGACAAAGGGGCTGGAGAGAGTTAGCTGTTTTGGGAGATAAGATAAACAAGTTTACTGGCATGATAGAAGGGTTAATTTGGTCCCCAAGGAGCAGTGAGGGTAATGATCAAGCTGATGATTGGGCTTTTGAGGAGGGGCCTCACTCTGATTTTACTGGCCCAACTTCTGGGAGCACAGCCTGTGTTGCAATTCTTAGAAACAACCAACTTGTTGTTGCAAATGCTGGTGATTCTCGTTGTGTAATATCTCGGAAGGGTCAGGCATATAATCTGTCAAGAGATCACAAACCTGATCTTGAGCTTGAGAAGGAGAGGATTTTGAAAGCAGGTGGTTTTATCCACGCAGGACGAGTCAATGGCAGCTTGAATCTTGCAAGAGCTATAGGTGACATGGAATTCAAGCAGAACAAATTTTTGCCAGCTGAAAAGCAAATTGTAACTGCCTGTCCAGATATAAACACTGTTGAGCTTTGTGATGATGACGAGTTTATCGTGCTAGCATGTGATGGCATCTGGGATTGCATGTCTAGCCAGCAAGTGGTCGATTATGTACATGAACAACTGGTCTCGGAAAGCAAGTTGTCTGTGGTGTGCGAGAGAGTCCTTGATAGGTGTTTGGCGCCAACGACTGCTGGTGGTGAGGGGTGTGATAACATGACCATGATCATAGTGCAGTTCGTGCAGTTAAAGAAGCCCCTGCAGTCGGCTGGATCTGCAGACGAGAGACCCTCACCAACCGAGGAAGCTGGAACTGGAAGTGATTCAAAGGCAGGTGAAAGTGAACCGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0033993 GO:0042221 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

367

Amino Acids

40.05

Weight (kDa)

5.06

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 626, 1070
Acc36I ACCTGC 2 cut(s) 626, 1070
AccB1I GGYRCC 1 cut(s) 928
AccB7I CCANNNNNTGG 2 cut(s) 476, 847
AciI CCGC 1 cut(s) 248
AclWI GGATC 1 cut(s) 1027
AcoI YGGCCR 2 cut(s) 58, 172
AcsI RAATTY 3 cut(s) 197, 704, 719
AcuI CTGAAG 1 cut(s) 63
AcyI GRCGYC 1 cut(s) 929
AfaI GTAC 1 cut(s) 861
AfiI CCNNNNNNNGG 3 cut(s) 476, 847, 1012
AgsI TTSAA 5 cut(s) 275, 631, 676, 709, 1074
AloI GAACNNNNNNTCC 2 cut(s) 255, 287
AluBI AGCT 9 cut(s) 281, 335, 422, 610, 672, 689, 731, 778, 1055
AluI AGCT 9 cut(s) 281, 335, 422, 610, 672, 689, 731, 778, 1055
Alw21I GWGCWC 2 cut(s) 231, 485
Alw26I GTCTC 2 cut(s) 880, 1027
AlwI GGATC 1 cut(s) 1027
AoxI GGCC 4 cut(s) 58, 172, 446, 466
ApeKI GCWGC 2 cut(s) 122, 669
ApoI RAATTY 3 cut(s) 197, 704, 719
Asp700I GAANNNNTTC 1 cut(s) 1069
AspLEI GCGC 1 cut(s) 931
AspS9I GGNCC 3 cut(s) 390, 446, 467
AsuC2I CCSGG 1 cut(s) 62
AsuHPI GGTGA 7 cut(s) 62, 209, 548, 707, 959, 1032, 1094
AsuNHI GCTAGC 1 cut(s) 805
AvaII GGWCC 1 cut(s) 390
BalI TGGCCA 1 cut(s) 174
BanI GGYRCC 1 cut(s) 928
Bbv12I GWGCWC 2 cut(s) 231, 485
BbvI GCAGC 2 cut(s) 134, 681
BccI CCATC 4 cut(s) 41, 87, 164, 809
BclI TGATCA 2 cut(s) 415, 972
BcnI CCSGG 1 cut(s) 62
BcoDI GTCTC 2 cut(s) 880, 1027
BfaI CTAG 2 cut(s) 806, 837
BfmI CTRYAG 3 cut(s) 690, 1007, 1023
BfoI RGCGCY 1 cut(s) 932
BfuAI ACCTGC 2 cut(s) 626, 1070
BisI GCNGC 3 cut(s) 123, 249, 670
BlsI GCNGC 3 cut(s) 124, 250, 671
Bme1390I CCNGG 1 cut(s) 62
Bme18I GGWCC 1 cut(s) 390
BmgT120I GGNCC 3 cut(s) 390, 446, 467
BmiI GGNNCC 3 cut(s) 392, 447, 930
BmrFI CCNGG 1 cut(s) 62
BmsI GCATC 3 cut(s) 103, 294, 828
BmtI GCTAGC 1 cut(s) 809
BplI GAGNNNNNCTC 2 cut(s) 1022, 1054
BpmI CTGGAG 2 cut(s) 273, 343
BpuEI CTTGAG 3 cut(s) 215, 626, 632
BpuMI CCSGG 1 cut(s) 62
BsaHI GRCGYC 1 cut(s) 929
BsaI GGTCTC 2 cut(s) 880, 1027
BsaJI CCNNGG 4 cut(s) 105, 175, 395, 1047
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 3 cut(s) 476, 847, 1012
Bse1I ACTGG 4 cut(s) 370, 469, 876, 1066
BseDI CCNNGG 4 cut(s) 105, 175, 395, 1047
BseGI GGATG 4 cut(s) 98, 118, 143, 301
BseLI CCNNNNNNNGG 3 cut(s) 476, 847, 1012
BseMII CTCAG 1 cut(s) 28
BseNI ACTGG 4 cut(s) 370, 469, 876, 1066
BseRI GAGGAG 1 cut(s) 455
BseXI GCAGC 2 cut(s) 134, 681
BsgI GTGCAG 2 cut(s) 1001, 1010
BshFI GGCC 4 cut(s) 60, 174, 448, 468
BshNI GGYRCC 1 cut(s) 928
BsiHKAI GWGCWC 2 cut(s) 231, 485
BsiSI CCGG 1 cut(s) 61
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 3 cut(s) 476, 847, 1012
BsmAI GTCTC 2 cut(s) 880, 1027
BsmFI GGGAC 1 cut(s) 376
BsnI GGCC 4 cut(s) 60, 174, 448, 468
Bso31I GGTCTC 2 cut(s) 880, 1027
Bsp1286I GDGCHC 2 cut(s) 231, 485
Bsp1407I TGTACA 1 cut(s) 859
Bsp143I GATC 6 cut(s) 133, 415, 589, 601, 972, 1019
Bsp19I CCATGG 2 cut(s) 105, 175
BspACI CCGC 1 cut(s) 248
BspANI GGCC 4 cut(s) 60, 174, 448, 468
BspCNI CTCAG 1 cut(s) 27
BspLI GGNNCC 3 cut(s) 392, 447, 930
BspMAI CTGCAG 2 cut(s) 1011, 1027
BspMI ACCTGC 2 cut(s) 626, 1070
BspOI GCTAGC 1 cut(s) 809
BspPI GGATC 1 cut(s) 1027
BspT107I GGYRCC 1 cut(s) 928
BspTNI GGTCTC 2 cut(s) 880, 1027
BsrGI TGTACA 1 cut(s) 859
BsrI ACTGG 4 cut(s) 370, 469, 876, 1066
BssECI CCNNGG 4 cut(s) 105, 175, 395, 1047
BssMI GATC 6 cut(s) 133, 415, 589, 601, 972, 1019
BssNI GRCGYC 1 cut(s) 929
BssT1I CCWWGG 3 cut(s) 105, 175, 395
Bst4CI ACNGT 1 cut(s) 772
BstACI GRCGYC 1 cut(s) 929
BstAPI GCANNNNNTGC 1 cut(s) 988
BstAUI TGTACA 1 cut(s) 859
BstC8I GCNNGC 4 cut(s) 99, 729, 807, 842
BstDEI CTNAG 2 cut(s) 14, 503
BstDSI CCRYGG 2 cut(s) 105, 175
BstF5I GGATG 4 cut(s) 98, 118, 143, 301
BstH2I RGCGCY 1 cut(s) 932
BstHHI GCGC 1 cut(s) 931
BstKTI GATC 6 cut(s) 136, 418, 592, 604, 975, 1022
BstMAI GTCTC 2 cut(s) 880, 1027
BstMBI GATC 6 cut(s) 133, 415, 589, 601, 972, 1019
BstMWI GCNNNNNNNGC 7 cut(s) 94, 122, 248, 494, 837, 988, 1022
BstNSI RCATGY 2 cut(s) 813, 835
BstSCI CCNGG 1 cut(s) 60
BstSFI CTRYAG 3 cut(s) 690, 1007, 1023
BstV1I GCAGC 2 cut(s) 134, 681
BstX2I RGATCY 1 cut(s) 1019
BstYI RGATCY 1 cut(s) 1019
BsuRI GGCC 4 cut(s) 60, 174, 448, 468
BtgI CCRYGG 2 cut(s) 105, 175
BtsCI GGATG 4 cut(s) 98, 118, 143, 301
BtsI GCAGTG 1 cut(s) 409
BtsIMutI CAGTG 2 cut(s) 409, 768
BveI ACCTGC 2 cut(s) 626, 1070
Cac8I GCNNGC 4 cut(s) 99, 729, 807, 842
CfoI GCGC 1 cut(s) 931
Cfr13I GGNCC 3 cut(s) 390, 446, 467
Csp6I GTAC 1 cut(s) 860
CviQI GTAC 1 cut(s) 860
DdeI CTNAG 2 cut(s) 14, 503
DinI GGCGCC 1 cut(s) 930
DpnI GATC 6 cut(s) 135, 417, 591, 603, 974, 1021
DpnII GATC 6 cut(s) 133, 415, 589, 601, 972, 1019
EaeI YGGCCR 2 cut(s) 58, 172
Eco130I CCWWGG 3 cut(s) 105, 175, 395
Eco31I GGTCTC 2 cut(s) 880, 1027
Eco47I GGWCC 1 cut(s) 390
Eco57I CTGAAG 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 446
EcoRI GAATTC 1 cut(s) 704
EcoT14I CCWWGG 3 cut(s) 105, 175, 395
EgeI GGCGCC 1 cut(s) 930
EheI GGCGCC 1 cut(s) 930
ErhI CCWWGG 3 cut(s) 105, 175, 395
FaqI GGGAC 1 cut(s) 376
FauNDI CATATG 1 cut(s) 244
FbaI TGATCA 2 cut(s) 415, 972
Fnu4HI GCNGC 3 cut(s) 123, 249, 670
FokI GGATG 4 cut(s) 105, 125, 130, 308
Fsp4HI GCNGC 3 cut(s) 123, 249, 670
FspBI CTAG 2 cut(s) 806, 837
GlaI GCGC 1 cut(s) 930
GluI GCNGC 3 cut(s) 123, 249, 670
GsuI CTGGAG 2 cut(s) 273, 343
HaeII RGCGCY 1 cut(s) 932
HaeIII GGCC 4 cut(s) 60, 174, 448, 468
HapII CCGG 1 cut(s) 61
HhaI GCGC 1 cut(s) 931
Hin1I GRCGYC 1 cut(s) 929
Hin6I GCGC 1 cut(s) 929
HinP1I GCGC 1 cut(s) 929
HindIII AAGCTT 1 cut(s) 279
HinfI GANTC 5 cut(s) 539, 660, 676, 909, 1070
HpaII CCGG 1 cut(s) 61
HphI GGTGA 7 cut(s) 62, 209, 548, 707, 959, 1032, 1094
Hpy166II GTNNAC 3 cut(s) 311, 363, 1091
Hpy188I TCNGA 6 cut(s) 43, 68, 290, 457, 561, 880
Hpy188III TCNNGA 6 cut(s) 131, 137, 232, 585, 605, 758
Hpy8I GTNNAC 3 cut(s) 311, 363, 1091
HpyAV CCTTC 3 cut(s) 371, 556, 610
HpyCH4III ACNGT 1 cut(s) 772
HpyF10VI GCNNNNNNNGC 7 cut(s) 94, 122, 248, 494, 837, 988, 1022
HpyF3I CTNAG 2 cut(s) 14, 503
Hsp92I GRCGYC 1 cut(s) 929
HspAI GCGC 1 cut(s) 929
KasI GGCGCC 1 cut(s) 928
Ksp22I TGATCA 2 cut(s) 415, 972
Kzo9I GATC 6 cut(s) 133, 415, 589, 601, 972, 1019
LmnI GCTCC 2 cut(s) 399, 480
Lsp1109I GCAGC 2 cut(s) 134, 681
LweI GCATC 3 cut(s) 103, 294, 828
MaeI CTAG 2 cut(s) 806, 837
MaeIII GTNAC 2 cut(s) 695, 745
MalI GATC 6 cut(s) 135, 417, 591, 603, 974, 1021
MboI GATC 6 cut(s) 133, 415, 589, 601, 972, 1019
MboII GAAGA 2 cut(s) 56, 206
MflI RGATCY 1 cut(s) 1019
MhlI GDGCHC 2 cut(s) 231, 485
MlsI TGGCCA 1 cut(s) 174
MluCI AATT 6 cut(s) 197, 384, 498, 704, 719, 741
MluNI TGGCCA 1 cut(s) 174
Mly113I GGCGCC 1 cut(s) 929
MlyI GAGTC 2 cut(s) 669, 918
Mox20I TGGCCA 1 cut(s) 174
MroXI GAANNNNTTC 1 cut(s) 1069
MscI TGGCCA 1 cut(s) 174
MseI TTAA 2 cut(s) 383, 995
MslI CAYNNNNRTG 1 cut(s) 968
Msp20I TGGCCA 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 731
MspI CCGG 1 cut(s) 61
MspR9I CCNGG 1 cut(s) 62
MwoI GCNNNNNNNGC 7 cut(s) 94, 122, 248, 494, 837, 988, 1022
NarI GGCGCC 1 cut(s) 929
NciI CCSGG 1 cut(s) 62
NcoI CCATGG 2 cut(s) 105, 175
NdeI CATATG 1 cut(s) 244
NdeII GATC 6 cut(s) 133, 415, 589, 601, 972, 1019
NheI GCTAGC 1 cut(s) 805
NlaIV GGNNCC 3 cut(s) 392, 447, 930
NmuCI GTSAC 1 cut(s) 695
NspI RCATGY 2 cut(s) 813, 835
PaqCI CACCTGC 2 cut(s) 626, 1070
PcsI WCGNNNNNNNCGW 1 cut(s) 798
PdmI GAANNNNTTC 1 cut(s) 1069
PfeI GAWTC 3 cut(s) 539, 676, 1070
PflMI CCANNNNNTGG 2 cut(s) 476, 847
PkrI GCNGC 3 cut(s) 124, 250, 671
PleI GAGTC 2 cut(s) 668, 917
PluTI GGCGCC 1 cut(s) 932
PpsI GAGTC 2 cut(s) 668, 917
PspN4I GGNNCC 3 cut(s) 392, 447, 930
PspPI GGNCC 3 cut(s) 390, 446, 467
PstI CTGCAG 2 cut(s) 1011, 1027
PsuI RGATCY 1 cut(s) 1019
PvuII CAGCTG 1 cut(s) 731
RsaI GTAC 1 cut(s) 861
RsaNI GTAC 1 cut(s) 860
RseI CAYNNNNRTG 1 cut(s) 968
SaqAI TTAA 2 cut(s) 383, 995
SatI GCNGC 3 cut(s) 123, 249, 670
Sau3AI GATC 6 cut(s) 133, 415, 589, 601, 972, 1019
Sau96I GGNCC 3 cut(s) 390, 446, 467
SchI GAGTC 2 cut(s) 669, 918
ScrFI CCNGG 1 cut(s) 62
SduI GDGCHC 2 cut(s) 231, 485
SfaNI GCATC 3 cut(s) 103, 294, 828
SfcI CTRYAG 3 cut(s) 690, 1007, 1023
SfoI GGCGCC 1 cut(s) 930
SinI GGWCC 1 cut(s) 390
SmiMI CAYNNNNRTG 1 cut(s) 968
SmlI CTYRAG 3 cut(s) 230, 605, 611
SmoI CTYRAG 3 cut(s) 230, 605, 611
Sse9I AATT 6 cut(s) 197, 384, 498, 704, 719, 741
SsiI CCGC 1 cut(s) 248
SspDI GGCGCC 1 cut(s) 928
SspMI CTAG 2 cut(s) 806, 837
StyD4I CCNGG 1 cut(s) 60
StyI CCWWGG 3 cut(s) 105, 175, 395
TaaI ACNGT 1 cut(s) 772
TaqI TCGA 2 cut(s) 138, 852
TasI AATT 6 cut(s) 197, 384, 498, 704, 719, 741
TatI WGTACW 1 cut(s) 859
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 3 cut(s) 539, 676, 1070
Tru1I TTAA 2 cut(s) 383, 995
Tru9I TTAA 2 cut(s) 383, 995
TscAI CASTG 2 cut(s) 409, 775
TseFI GTSAC 1 cut(s) 695
TseI GCWGC 2 cut(s) 122, 669
Tsp45I GTSAC 1 cut(s) 695
TspDTI ATGAA 3 cut(s) 252, 312, 879
TspRI CASTG 2 cut(s) 409, 775
Van91I CCANNNNNTGG 2 cut(s) 476, 847
VpaK11BI GGWCC 1 cut(s) 390
XapI RAATTY 3 cut(s) 197, 704, 719
XceI RCATGY 2 cut(s) 813, 835
XmnI GAANNNNTTC 1 cut(s) 1069
XspI CTAG 2 cut(s) 806, 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.