Rroxscaffold_2G00111730

protein phosphatase 2C 60

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000743
Physical Location & Seq
Reverse (-)
36456440 .. 36464383
7944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00111730.1

Sequence Viewer

Length: 1152 bp
ATGTGCATGATTTGGATTATTAAGTACGGCGGTTTGGATATGCTGGAGATGGGAATATATCTGAGCGCTCCGAAAACCGATAAGGTATCGGAAGATGGTGAGAATGATAGACTTCGATTTGGGGCTTCCAACATGCAGGGGTGGCGTTCAACCATGGAAGATGCTCATGCTGCTTTTCCGGATCTCGACAATTCAACATCTTTCTTTGGTGTTTATGATGGTCATGGAGGTAAAGCGGTGGCAAATTTCTGTGCCAAGTATCTCCACTTACAAGTGCTCAACCAGGAAGCATATCTAGCTGGTGATTTAGGCACTTCCCTGCAGAAAGCTTTTCTCAGGATGGATGAGATGATGCGTGGACAGAGAGGATGGAGAGAACTAGCTGTATTGGGAGATAAGATAGACAAAGTTTCAGGCCTTATTGAAGGGTTCATCTTTTCTCCTAAGAGTGTTGAAGCTAAGAGAAGTGCATTCAATGATCAAATTGATCAGTGGTCTTCCGAGGAGGGGCCTCACTCTGATTTTGATGGACCAAACTCTGGAAGCACAGCTTGTGTTGCTATCATCCGAAACAATCAACTTGTTGTTGCCAATGCTGGTGATTCGCGTTGTGTAATATCGAGGAAGGGTCAGGCATATCCTTTGTCTAAAGATCATAAGCCTGACATTGAGAATGAGAAGGATAGAATTCTGAAGGCCGGTGGATTTATCCAAGTTGGACGGGTCAATGGAAGTTTGAACTTGGCAAGAGCGATTGGAGATGTGGAATTCAAGCAAAACAAACAATTGCCTGTTGAAAAGCAGATTGTAACTGCCAATCCAGATGTAACAAGTGTTGAGATTTGTGATGATGATGAGTTTCTTGTCATCGCTTGTGATGGGATATGGGACTGCATGTCAAGCCAACAACTTGTGGATTATGTTGGAGAACAATTGAAACATGAAAGGAAACTCTCCGTGGTTTGTGAGAGAGTGTTTGAAAGGTGCTTGGCACCCTCGACAGGTGGTGAAGGCTGTGACAACATGACAATGATCTTGGTTCAGTTTAAGAAGCCTATTATTTCAACTGCTTCTACTGGGAACAAGCCTCTTTCGTCTAATCCATCACCTGAGAAGGACAAAAGCTCGGGAAAAGCTACATTGGGGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

383

Amino Acids

41.95

Weight (kDa)

5.25

Isoelectric Point (pI)

35.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 39 - 120 6.6e-12 Protein phosphatase 2C
PP2C PF00481 152 - 334 3.7e-60 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 991
AccB7I CCANNNNNTGG 1 cut(s) 539
AccII CGCG 1 cut(s) 607
AccIII TCCGGA 1 cut(s) 178
AciI CCGC 2 cut(s) 30, 236
AclWI GGATC 1 cut(s) 189
AcsI RAATTY 3 cut(s) 244, 687, 767
AcuI CTGAAG 1 cut(s) 713
AfaI GTAC 1 cut(s) 26
AfeI AGCGCT 1 cut(s) 67
AfiI CCNNNNNNNGG 3 cut(s) 507, 539, 1001
AhdI GACNNNNNGTC 1 cut(s) 895
AjnI CCWGG 1 cut(s) 282
AluBI AGCT 7 cut(s) 299, 329, 383, 458, 551, 1125, 1136
AluI AGCT 7 cut(s) 299, 329, 383, 458, 551, 1125, 1136
Alw21I GWGCWC 1 cut(s) 279
AlwI GGATC 1 cut(s) 189
Ama87I CYCGRG 1 cut(s) 1126
Aor13HI TCCGGA 1 cut(s) 178
Aor51HI AGCGCT 1 cut(s) 67
AoxI GGCC 3 cut(s) 415, 509, 696
ApeKI GCWGC 1 cut(s) 170
ApoI RAATTY 3 cut(s) 244, 687, 767
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 2 cut(s) 509, 530
AsuHPI GGTGA 5 cut(s) 110, 314, 611, 1019, 1098
AvaI CYCGRG 1 cut(s) 1126
AvaII GGWCC 1 cut(s) 530
BanI GGYRCC 1 cut(s) 991
BbsI GAAGAC 1 cut(s) 489
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 157
BccI CCATC 8 cut(s) 43, 89, 212, 334, 363, 521, 872, 1111
BceAI ACGGC 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 284
BclI TGATCA 2 cut(s) 478, 487
BfaI CTAG 2 cut(s) 296, 380
BfmI CTRYAG 1 cut(s) 320
BfoI RGCGCY 1 cut(s) 69
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
Bme1390I CCNGG 1 cut(s) 284
Bme18I GGWCC 1 cut(s) 530
BmeRI GACNNNNNGTC 1 cut(s) 895
BmeT110I CYCGRG 1 cut(s) 1126
BmgT120I GGNCC 2 cut(s) 509, 530
BmiI GGNNCC 2 cut(s) 510, 993
BmrFI CCNGG 1 cut(s) 284
BmrI ACTGGG 1 cut(s) 1086
BmsI GCATC 2 cut(s) 151, 342
BmuI ACTGGG 1 cut(s) 1086
BpiI GAAGAC 1 cut(s) 489
BpmI CTGGAG 1 cut(s) 65
BsaJI CCNNGG 3 cut(s) 153, 501, 957
BsaWI WCCGGW 1 cut(s) 178
Bsc4I CCNNNNNNNGG 3 cut(s) 507, 539, 1001
Bse118I RCCGGY 1 cut(s) 698
Bse1I ACTGG 1 cut(s) 1081
BseAI TCCGGA 1 cut(s) 178
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 3 cut(s) 153, 501, 957
BseGI GGATG 4 cut(s) 345, 349, 374, 564
BseLI CCNNNNNNNGG 3 cut(s) 507, 539, 1001
BseMII CTCAG 3 cut(s) 53, 349, 1101
BseNI ACTGG 1 cut(s) 1081
BseRI GAGGAG 1 cut(s) 518
BseXI GCAGC 1 cut(s) 157
Bsh1236I CGCG 1 cut(s) 607
BshFI GGCC 3 cut(s) 417, 511, 698
BshNI GGYRCC 1 cut(s) 991
BsiHKAI GWGCWC 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 1126
BsiSI CCGG 2 cut(s) 179, 699
BslFI GGGAC 1 cut(s) 902
BslI CCNNNNNNNGG 3 cut(s) 507, 539, 1001
BsmFI GGGAC 1 cut(s) 902
BsmI GAATGC 1 cut(s) 470
BsnI GGCC 3 cut(s) 417, 511, 698
BsoBI CYCGRG 1 cut(s) 1126
Bsp1286I GDGCHC 1 cut(s) 279
Bsp13I TCCGGA 1 cut(s) 178
Bsp143I GATC 5 cut(s) 181, 478, 487, 652, 1032
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 2 cut(s) 30, 236
BspANI GGCC 3 cut(s) 417, 511, 698
BspCNI CTCAG 3 cut(s) 54, 348, 1102
BspEI TCCGGA 1 cut(s) 178
BspFNI CGCG 1 cut(s) 607
BspLI GGNNCC 2 cut(s) 510, 993
BspMAI CTGCAG 1 cut(s) 324
BspPI GGATC 1 cut(s) 189
BspT107I GGYRCC 1 cut(s) 991
BsrFI RCCGGY 1 cut(s) 698
BsrI ACTGG 1 cut(s) 1081
BssAI RCCGGY 1 cut(s) 698
BssECI CCNNGG 3 cut(s) 153, 501, 957
BssMI GATC 5 cut(s) 181, 478, 487, 652, 1032
BssT1I CCWWGG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 284
BstDEI CTNAG 5 cut(s) 62, 335, 444, 459, 1110
BstDSI CCRYGG 2 cut(s) 153, 957
BstF5I GGATG 4 cut(s) 345, 349, 374, 564
BstFNI CGCG 1 cut(s) 607
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 5 cut(s) 184, 481, 490, 655, 1035
BstMBI GATC 5 cut(s) 181, 478, 487, 652, 1032
BstMWI GCNNNNNNNGC 5 cut(s) 142, 170, 296, 557, 900
BstNI CCWGG 1 cut(s) 284
BstNSI RCATGY 2 cut(s) 136, 898
BstSCI CCNGG 1 cut(s) 282
BstSFI CTRYAG 1 cut(s) 320
BstUI CGCG 1 cut(s) 607
BstV1I GCAGC 1 cut(s) 157
BstV2I GAAGAC 1 cut(s) 489
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 3 cut(s) 417, 511, 698
BtgI CCRYGG 2 cut(s) 153, 957
BtgZI GCGATG 1 cut(s) 853
BtsCI GGATG 4 cut(s) 345, 349, 374, 564
BtsIMutI CAGTG 1 cut(s) 497
CfoI GCGC 1 cut(s) 68
Cfr10I RCCGGY 1 cut(s) 698
Cfr13I GGNCC 2 cut(s) 509, 530
Csp6I GTAC 1 cut(s) 25
CviAII CATG 8 cut(s) 7, 133, 154, 167, 224, 895, 941, 1024
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 5 cut(s) 62, 335, 444, 459, 1110
DpnI GATC 5 cut(s) 183, 480, 489, 654, 1034
DpnII GATC 5 cut(s) 181, 478, 487, 652, 1032
DriI GACNNNNNGTC 1 cut(s) 895
Eam1105I GACNNNNNGTC 1 cut(s) 895
Eco130I CCWWGG 1 cut(s) 153
Eco147I AGGCCT 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 530
Eco47III AGCGCT 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 713
Eco88I CYCGRG 1 cut(s) 1126
EcoO109I RGGNCCY 1 cut(s) 509
EcoRI GAATTC 2 cut(s) 687, 767
EcoRII CCWGG 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 8 cut(s) 10, 136, 157, 170, 227, 898, 944, 1027
FalI AAGNNNNNCTT 2 cut(s) 535, 567
FaqI GGGAC 1 cut(s) 902
FatI CATG 8 cut(s) 6, 132, 153, 166, 223, 894, 940, 1023
FbaI TGATCA 2 cut(s) 478, 487
Fnu4HI GCNGC 1 cut(s) 171
FokI GGATG 4 cut(s) 352, 356, 381, 551
Fsp4HI GCNGC 1 cut(s) 171
FspBI CTAG 2 cut(s) 296, 380
GlaI GCGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 171
GsuI CTGGAG 1 cut(s) 65
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 3 cut(s) 417, 511, 698
HapII CCGG 2 cut(s) 179, 699
HhaI GCGC 1 cut(s) 68
Hin1II CATG 8 cut(s) 10, 136, 157, 170, 227, 898, 944, 1027
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HindIII AAGCTT 1 cut(s) 327
HinfI GANTC 1 cut(s) 602
HpaII CCGG 2 cut(s) 179, 699
HphI GGTGA 5 cut(s) 110, 314, 611, 1019, 1098
Hpy166II GTNNAC 1 cut(s) 359
Hpy188I TCNGA 7 cut(s) 63, 72, 91, 502, 520, 569, 693
Hpy188III TCNNGA 6 cut(s) 179, 185, 337, 540, 821, 1128
Hpy8I GTNNAC 1 cut(s) 359
HpyAV CCTTC 6 cut(s) 419, 619, 673, 688, 1004, 1108
HpyCH4V TGCA 5 cut(s) 6, 136, 322, 470, 894
HpyF10VI GCNNNNNNNGC 5 cut(s) 142, 170, 296, 557, 900
HpyF3I CTNAG 5 cut(s) 62, 335, 444, 459, 1110
Hsp92II CATG 8 cut(s) 10, 136, 157, 170, 227, 898, 944, 1027
HspAI GCGC 1 cut(s) 66
Kpn2I TCCGGA 1 cut(s) 178
Ksp22I TGATCA 2 cut(s) 478, 487
Kzo9I GATC 5 cut(s) 181, 478, 487, 652, 1032
LmnI GCTCC 1 cut(s) 73
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 2 cut(s) 151, 342
MaeI CTAG 2 cut(s) 296, 380
MaeIII GTNAC 3 cut(s) 808, 826, 1016
MalI GATC 5 cut(s) 183, 480, 489, 654, 1034
MboI GATC 5 cut(s) 181, 478, 487, 652, 1032
MboII GAAGA 3 cut(s) 104, 170, 489
MfeI CAATTG 2 cut(s) 785, 932
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 7 cut(s) 190, 244, 483, 687, 767, 785, 932
MmeI TCCRAC 3 cut(s) 153, 697, 904
MnlI CCTC 8 cut(s) 221, 359, 496, 499, 522, 615, 1006, 1098
MroI TCCGGA 1 cut(s) 178
MseI TTAA 2 cut(s) 21, 1047
MslI CAYNNNNRTG 1 cut(s) 1028
MspI CCGG 2 cut(s) 179, 699
MspR9I CCNGG 1 cut(s) 284
MunI CAATTG 2 cut(s) 785, 932
Mva1269I GAATGC 1 cut(s) 470
MvaI CCWGG 1 cut(s) 284
MvnI CGCG 1 cut(s) 607
MwoI GCNNNNNNNGC 5 cut(s) 142, 170, 296, 557, 900
NcoI CCATGG 1 cut(s) 153
NdeII GATC 5 cut(s) 181, 478, 487, 652, 1032
NlaIII CATG 8 cut(s) 10, 136, 157, 170, 227, 898, 944, 1027
NlaIV GGNNCC 2 cut(s) 510, 993
NmuCI GTSAC 1 cut(s) 1016
NspI RCATGY 2 cut(s) 136, 898
PceI AGGCCT 1 cut(s) 417
PctI GAATGC 1 cut(s) 470
PfeI GAWTC 1 cut(s) 602
PflMI CCANNNNNTGG 1 cut(s) 539
PkrI GCNGC 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 282
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 2 cut(s) 510, 993
PspPI GGNCC 2 cut(s) 509, 530
PstI CTGCAG 1 cut(s) 324
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 1028
SaqAI TTAA 2 cut(s) 21, 1047
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 5 cut(s) 181, 478, 487, 652, 1032
Sau96I GGNCC 2 cut(s) 509, 530
ScrFI CCNGG 1 cut(s) 284
SduI GDGCHC 1 cut(s) 279
SfaNI GCATC 2 cut(s) 151, 342
SfcI CTRYAG 1 cut(s) 320
SinI GGWCC 1 cut(s) 530
SmiMI CAYNNNNRTG 1 cut(s) 1028
Sse9I AATT 7 cut(s) 190, 244, 483, 687, 767, 785, 932
SseBI AGGCCT 1 cut(s) 417
SsiI CCGC 2 cut(s) 30, 236
SspMI CTAG 2 cut(s) 296, 380
StuI AGGCCT 1 cut(s) 417
StyD4I CCNGG 1 cut(s) 282
StyI CCWWGG 1 cut(s) 153
TaqI TCGA 4 cut(s) 115, 186, 620, 998
TasI AATT 7 cut(s) 190, 244, 483, 687, 767, 785, 932
TfiI GAWTC 1 cut(s) 602
Tru1I TTAA 2 cut(s) 21, 1047
Tru9I TTAA 2 cut(s) 21, 1047
TscAI CASTG 1 cut(s) 497
TseFI GTSAC 1 cut(s) 1016
TseI GCWGC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 1016
TspDTI ATGAA 2 cut(s) 421, 957
TspGWI ACGGA 1 cut(s) 946
TspRI CASTG 1 cut(s) 497
Van91I CCANNNNNTGG 1 cut(s) 539
VpaK11BI GGWCC 1 cut(s) 530
XapI RAATTY 3 cut(s) 244, 687, 767
XceI RCATGY 2 cut(s) 136, 898
XspI CTAG 2 cut(s) 296, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.