FvH4_3g06341

Cation H( ) antiporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
3639204 .. 3639455
252 bp
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UTR
Exon/CDS
Intron
FvH4_3g06341.t1

Sequence Viewer

Length: 252 bp
ATGGAGGCCGCAACCGCCACGGTATCAGAGACGTTTCAGGTGGCAATGATTTTCTTGGGAGGAAATGACGACGGGCAAGCACTCGTCTTCGCTAGACGCATAGCCAAGGACTCGTGCATAAGCCTCACGGTGATACATTTATTTGATGCAGCTGAATACAACGACGACGACAACGTAGCAGACAAGTTGGACAAAGCCAAATGGGAGAGGCTACAAGAGAGGGAGATGGTGAAGGAATATGAACATGAGTAG

Protein Analysis

84

Amino Acids

9.43

Weight (kDa)

4.52

Isoelectric Point (pI)

29.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 9, 15
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 23
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 1 cut(s) 149
AsuHPI GGTGA 2 cut(s) 142, 241
BauI CACGAG 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 161
BccI CCATC 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 1 cut(s) 93
BisI GCNGC 2 cut(s) 9, 150
BlsI GCNGC 2 cut(s) 10, 151
BmsI GCATC 1 cut(s) 136
BpiI GAAGAC 1 cut(s) 79
BsaJI CCNNGG 2 cut(s) 18, 105
Bse3DI GCAATG 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 18, 105
BseMI GCAATG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 161
BshFI GGCC 1 cut(s) 8
BsmAI GTCTC 1 cut(s) 23
BsmBI CGTCTC 1 cut(s) 23
BsnI GGCC 1 cut(s) 8
BspACI CCGC 2 cut(s) 9, 15
BspANI GGCC 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 51
BssECI CCNNGG 2 cut(s) 18, 105
BssSI CACGAG 1 cut(s) 112
BssT1I CCWWGG 1 cut(s) 105
Bst2BI CACGAG 1 cut(s) 112
Bst4CI ACNGT 2 cut(s) 22, 130
BstC8I GCNNGC 1 cut(s) 78
BstDSI CCRYGG 1 cut(s) 18
BstMAI GTCTC 1 cut(s) 23
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 161
BstV2I GAAGAC 1 cut(s) 79
BsuRI GGCC 1 cut(s) 8
BtgI CCRYGG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 78
CseI GACGC 1 cut(s) 105
CviAII CATG 1 cut(s) 245
CviJI RGCY 6 cut(s) 8, 104, 123, 152, 197, 211
CviKI_1 RGCY 6 cut(s) 8, 104, 123, 152, 197, 211
Eco130I CCWWGG 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
Esp3I CGTCTC 1 cut(s) 23
FaeI CATG 1 cut(s) 248
FaiI YATR 4 cut(s) 101, 119, 240, 246
FatI CATG 1 cut(s) 244
Fnu4HI GCNGC 2 cut(s) 9, 150
Fsp4HI GCNGC 2 cut(s) 9, 150
FspBI CTAG 1 cut(s) 93
GluI GCNGC 2 cut(s) 9, 150
HaeIII GGCC 1 cut(s) 8
HgaI GACGC 1 cut(s) 105
Hin1II CATG 1 cut(s) 248
HinfI GANTC 1 cut(s) 110
HphI GGTGA 2 cut(s) 142, 241
Hpy188I TCNGA 1 cut(s) 28
Hpy99I CGWCG 3 cut(s) 74, 167, 170
HpyAV CCTTC 1 cut(s) 226
HpyCH4III ACNGT 2 cut(s) 22, 130
HpyCH4IV ACGT 2 cut(s) 32, 174
HpyCH4V TGCA 2 cut(s) 117, 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpySE526I ACGT 2 cut(s) 32, 174
Hsp92II CATG 1 cut(s) 248
LpnPI CCDG 1 cut(s) 23
Lsp1109I GCAGC 1 cut(s) 161
LweI GCATC 1 cut(s) 136
MaeI CTAG 1 cut(s) 93
MaeII ACGT 2 cut(s) 32, 174
MboII GAAGA 1 cut(s) 79
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 4 cut(s) 53, 134, 201, 213
MspA1I CMGCKG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 14
NlaIII CATG 1 cut(s) 248
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PkrI GCNGC 2 cut(s) 10, 151
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PvuII CAGCTG 1 cut(s) 152
SatI GCNGC 2 cut(s) 9, 150
SchI GAGTC 1 cut(s) 104
SetI ASST 4 cut(s) 35, 42, 154, 177
SfaNI GCATC 1 cut(s) 136
SsiI CCGC 2 cut(s) 9, 15
SspMI CTAG 1 cut(s) 93
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 2 cut(s) 22, 130
TaiI ACGT 2 cut(s) 35, 177
TauI GCSGC 1 cut(s) 11
TseI GCWGC 1 cut(s) 149
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.