Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001192

Physical Location & Seq

Genomic Coordinates Reverse (-)

76746579 .. 76750187

Gene Structure 3609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G043750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2295 bp

ATGGGAGATGCATATCATCCGGTAACTATTGGGCAGTGTATTCAATTGCCTCCCAATGTACATTCGGAGGGAATAAAAGGGAAGAAAGATCGTTGGGGACTGGGGTTTTCCCTTCCGATGCTGGAAATGCAGATGGCGGGTATACTCCTCGGCCACCTTGGCAAAAACCTCAGCCTCCCCGGGACGGATAAGAAGTTGGACGAACTAACATTTCCTGTAGACAGTCAAGAAGTAATTAGTGTTCTGGGTGAGCTTGGCTTTGGACTCTTTCTGTTCGTCATTGGAGTGAAAATGGAGGTGGAAATGATAAGAAGAATAGGACGTAAAGCGATCCTCACCGGTACTTTATGCACGTTGGTCCCTTTGGTCAGCGGTATAAGTCTTCAAAAGCTTACCGCAGGACCTGTATTTGGCATTGACAAGGAAAAAACCGACAGGCTTACGGTTGTGACTGCCATACATACACTAACTTTTTTTCCGGTTGTTTCTCTCCTTCTCGAGGAACTGAAGCTCCTCAATTCTGAAATGGGCCGGTTAAGCCTGACTGCTACCATAGTCTGTGAGCTCTTAAGTTTGTTTCTCCAGTTTGTTAACAGATCAATTTCATCCATAACTAATGAAGGACATGAGAGGGATTTAGTACACCTCGCAATAGCCTTTGGTTACGTTACTTCTATTGCGGTAATGTTTAGACCAATAATGTTATGGGTTGTTAGGAAGACCCCGGACAACAGGCCAGTCAAGAAAATCTATCTCAATGCCATAGTCCTGCTGGTGTTTGTGTCTGGAATAGGTTCACATCTATATGGCCAGACATTTCATTTTGGCCCTCTCATATTTGGTTTGGCTGTCCCAGCTGGACAACCTCTGGGATCGGCTTTGGAAGAAAAATTCCATCTCTTTGTTTTCGAAGTGTTTCTACCCCTTTTTGTGACTACATATGCAATGAGGGCTGATTTTGGGTCGATCAGATTGGACGATCCAAGAACACAGCTTACAATAATCCTCATAGTCCTCATTTTTGTGGTCAAAATATTAGCCACCATGGTCGCTCCGTTATATTTTAAGGTTCCCTTAACCGATGCATTTGTTCTTGCTCTCATTTTGAGCTGCAGAGGGATTATCCACCTTGGCACCTATACTTGGTACAGCGACACCCGGGTAAATGATTCTGCTGATTCTGTGTATGCTGTGACACTCGCTAGCGTTGTAGTGACTTCAACTTTCGTGCCTATTATAGTGAAGCGCCTCTATGATCCTTCAAGAAAATACGCAGGCTACGAGAGAAGGGACATTATGCATTTGAAACCTAATGCAGAGCTCAAAATTCTCACCTGCATCCACAGGTCATCTAACATGCCTGCAGTGATCAATCTACTTGATGCAGCGTGTCCATCTAAAGAAAACCCCATTAATGTTTGTGTACTCCATCTCATCGAATTAATGGGCAGAACGGCTCCCATATTTATCTCCCACCAAGTGCAGGGGAAAACAGTCTCCCATGTTAATACATATTCAGCAAATGTGATTCTTTATTTCAATCAGTTTGAGAAAGAAAATCGTGGTGCTGTTAATTTGAGCATGTTCACAGCAATCTCTCCACCAAATATCATGCATGAAGACATATGCACGCTTGCAATGGACAAGCTCACATCCCTAATAATCCTCCCATTTCATCGAAAATGGTCGATTGACGGGTCCAGTATTGAGTCGGAAGACAATACTATAAGGACACTAAACTTCAGTGTACTCGAAAGAGCTCCTTGTTCCGTTGGTATCCTTGTGGATCGGGGACATTTAGGTCGGTCCACCTCTGTTGTATTCACACTATCAACATTTTCGGTTGCTGTAGTCTTCTTGGGAGGGAAAGATGACAGGGAGGCATTGACCTTTGCCAAAAGAATGGCCAGGGACTCGACGATTAGGTTAACAGTAATCCATTTAGTGGCCATGGGTAATGAATATGCTGGTGGGGAATGGGATAAAATACTGGATGCAGAGGTATTGAAGGAGTTCAAATATAACCATGTGGGTGAAGGTCTTGTAATATATTTAGAGGAAATGGTGAAAGATGGACCGCAAACAGCCTTTCTATTAAGGTCTATGGTGGAAGAGTATGATATAATCATAGTTGGGAGAAGTCATAAGTTAGAGTCACCTCAGACGGTAGGGCTTTCCGAATGGTGCGAATTTCCGGAGTTGGGGATAATAGGAGACTTGCTTGCATCACCTGATGTCGATTGTAAGGCCTCCATTCTTGTGATGCAACAACAAGAGTTGAGCAGATGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

764

Amino Acids

84.76

Weight (kDa)

6.51

Isoelectric Point (pI)

35.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	45 - 415	1.2e-31	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	475 - 601	3.6e-12	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	613 - 757	2e-10	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44900 AT5G22900
fragaria_vesca	FvH4_3g06341 FvH4_3g23050 FvH4_3g39831 FvH4_6g14510 FvH4_7g14610
malus_domestica	MD02G1295300.v1.1 MD03G1057300.v1.1 MD05G1291400.v1.1 MD10G1267300.v1.1 MD11G1059200.v1.1 MD14G1082300.v1.1
prunus_persica	Prupe.1G346300_v2.0.a1 Prupe.2G029000_v2.0.a1 Prupe.4G074200_v2.0.a1 Prupe.6G047400_v2.0.a1 Prupe.6G047500_v2.0.a1 Prupe.6G047600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0356111 RchiOBHm_Chr1g0356121 RchiOBHm_Chr4g0446581 RchiOBHm_Chr5g0071781
rosa_laevigata	RLG00000005649 RLG00000028106 RLG00000036246 RLG00000036247 RLG00000036248
rosa_multiflora	Rmu_sc0001113.1_g000009 Rmu_sc0002569.1_g000023 Rmu_sc0003229.1_g000013 Rmu_sc0036166.1_g000001 Rmu_ssc0000144.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009380 Rroxscaffold_1G00009410 Rroxscaffold_4G00299800 Rroxscaffold_5G00386970
rosa_rugosa	Rorug04G0372400 Rorug05G0414600 Rorug05G0414700
rosa_samantha	Rh1AG262500 Rh1BG231000 Rh1CG245800 Rh4AG434100 Rh4BG443300 Rh4CG460600 Rh4DG442100 Rh5AG470700 Rh5BG490400 Rh5CG514400 Rh5DG501400 Rh5DG501600 Rh5DG501700
rosa_wichuraiana	Rw1G023190 Rw4G037110 Rw5G043740 Rw5G043750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1343
AasI	GACNNNNNNGTC	1 cut(s)	1800
Acc36I	ACCTGC	1 cut(s)	1343
AccB1I	GGYRCC	1 cut(s)	1133
AccB7I	CCANNNNNTGG	1 cut(s)	1945
AccI	GTMKAC	2 cut(s)	142, 219
AccIII	TCCGGA	1 cut(s)	2194
AciI	CCGC	5 cut(s)	137, 372, 396, 680, 2078
AclWI	GGATC	5 cut(s)	325, 880, 974, 1250, 1794
AcoI	YGGCCR	4 cut(s)	151, 808, 1905, 1947
AcsI	RAATTY	3 cut(s)	890, 1326, 2189
AcuI	CTGAAG	2 cut(s)	527, 1726
AdeI	CACNNNGTG	1 cut(s)	1480
AfaI	GTAC	6 cut(s)	60, 343, 642, 1148, 1425, 1749
AfiI	CCNNNNNNNGG	7 cut(s)	184, 410, 499, 1143, 1483, 1945, 2201
AflII	CTTAAG	1 cut(s)	568
AgeI	ACCGGT	1 cut(s)	338
AgsI	TTSAA	8 cut(s)	44, 386, 1221, 1263, 1306, 1540, 2008, 2017
AjnI	CCWGG	1 cut(s)	1907
AloI	GAACNNNNNNTCC	2 cut(s)	495, 527
Alw21I	GWGCWC	3 cut(s)	567, 1323, 1762
Alw26I	GTCTC	2 cut(s)	1501, 2208
AlwI	GGATC	5 cut(s)	325, 880, 974, 1250, 1794
AlwNI	CAGNNNCTG	1 cut(s)	404
Ama87I	CYCGRG	3 cut(s)	179, 497, 1158
Aor13HI	TCCGGA	1 cut(s)	2194
AoxI	GGCC	8 cut(s)	151, 529, 734, 808, 826, 1905, 1947, 2247
ApeKI	GCWGC	2 cut(s)	1110, 1385
ApoI	RAATTY	3 cut(s)	890, 1326, 2189
AseI	ATTAAT	2 cut(s)	1413, 1442
AsiGI	ACCGGT	1 cut(s)	338
Asp700I	GAANNNNTTC	3 cut(s)	793, 915, 2012
AspLEI	GCGC	1 cut(s)	1248
AspS9I	GGNCC	7 cut(s)	358, 401, 529, 827, 1698, 1806, 2075
AsuC2I	CCSGG	5 cut(s)	180, 181, 725, 1159, 1160
AsuHPI	GGTGA	7 cut(s)	260, 328, 1324, 2045, 2077, 2148, 2220
AsuII	TTCGAA	1 cut(s)	909
AsuNHI	GCTAGC	1 cut(s)	1202
AvaI	CYCGRG	3 cut(s)	179, 497, 1158
AvaII	GGWCC	5 cut(s)	358, 401, 1698, 1806, 2075
BalI	TGGCCA	3 cut(s)	810, 1907, 1949
BanI	GGYRCC	1 cut(s)	1133
BanII	GRGCYC	3 cut(s)	567, 1323, 1762
BarI	GAAGNNNNNNTAC	2 cut(s)	903, 935
BbsI	GAAGAC	5 cut(s)	374, 725, 1626, 1722, 1846
Bbv12I	GWGCWC	3 cut(s)	567, 1323, 1762
BbvCI	CCTCAGC	1 cut(s)	170
BbvI	GCAGC	2 cut(s)	1097, 1397
BccI	CCATC	5 cut(s)	127, 903, 1402, 1437, 2066
BceAI	ACGGC	1 cut(s)	1470
BciT130I	CCWGG	1 cut(s)	1909
BciVI	GTATCC	1 cut(s)	1787
BclI	TGATCA	1 cut(s)	1368
BcnI	CCSGG	5 cut(s)	180, 181, 725, 1159, 1160
BcoDI	GTCTC	2 cut(s)	1501, 2208
BfaI	CTAG	1 cut(s)	1203
BfmI	CTRYAG	4 cut(s)	216, 1111, 1362, 1848
BfoI	RGCGCY	1 cut(s)	1249
BfrI	CTTAAG	1 cut(s)	568
BfuAI	ACCTGC	1 cut(s)	1343
BfuI	GTATCC	1 cut(s)	1787
BglI	GCCNNNNNGGC	1 cut(s)	159
BisI	GCNGC	2 cut(s)	1111, 1386
BlsI	GCNGC	2 cut(s)	1112, 1387
Bme1390I	CCNGG	6 cut(s)	180, 181, 725, 1159, 1160, 1909
Bme18I	GGWCC	5 cut(s)	358, 401, 1698, 1806, 2075
BmeT110I	CYCGRG	3 cut(s)	179, 497, 1158
BmgT120I	GGNCC	7 cut(s)	358, 401, 529, 827, 1698, 1806, 2075
BmiI	GGNNCC	5 cut(s)	360, 1071, 1135, 1458, 1699
BmrFI	CCNGG	6 cut(s)	180, 181, 725, 1159, 1160, 1909
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	8 cut(s)	108, 1072, 1347, 1372, 1984, 2234, 2253, 2276
BmtI	GCTAGC	1 cut(s)	1206
BmuI	ACTGGG	1 cut(s)	110
BpiI	GAAGAC	5 cut(s)	374, 725, 1626, 1722, 1846
BpmI	CTGGAG	1 cut(s)	566
Bpu10I	CCTNAGC	1 cut(s)	170
Bpu14I	TTCGAA	1 cut(s)	909
BpuMI	CCSGG	5 cut(s)	180, 181, 725, 1159, 1160
BsaBI	GATNNNNATC	1 cut(s)	12
BsaWI	WCCGGW	4 cut(s)	19, 338, 478, 2194
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	7 cut(s)	184, 410, 499, 1143, 1483, 1945, 2201
Bse118I	RCCGGY	2 cut(s)	338, 531
Bse1I	ACTGG	5 cut(s)	105, 583, 737, 1701, 1995
Bse3DI	GCAATG	2 cut(s)	951, 1644
Bse8I	GATNNNNATC	1 cut(s)	12
BseAI	TCCGGA	1 cut(s)	2194
BseBI	CCWGG	1 cut(s)	1909
BseGI	GGATG	5 cut(s)	16, 605, 1338, 1652, 1999
BseJI	GATNNNNATC	1 cut(s)	12
BseLI	CCNNNNNNNGG	7 cut(s)	184, 410, 499, 1143, 1483, 1945, 2201
BseMI	GCAATG	2 cut(s)	951, 1644
BseMII	CTCAG	2 cut(s)	184, 2174
BseNI	ACTGG	5 cut(s)	105, 583, 737, 1701, 1995
BseRI	GAGGAG	2 cut(s)	137, 503
BseXI	GCAGC	2 cut(s)	1097, 1397
BseYI	CCCAGC	1 cut(s)	853
BsgI	GTGCAG	1 cut(s)	1502
BshFI	GGCC	8 cut(s)	153, 531, 736, 810, 828, 1907, 1949, 2249
BshNI	GGYRCC	1 cut(s)	1133
BshTI	ACCGGT	1 cut(s)	338
BsiHKAI	GWGCWC	3 cut(s)	567, 1323, 1762
BsiHKCI	CYCGRG	3 cut(s)	179, 497, 1158
BsiSI	CCGG	8 cut(s)	20, 180, 339, 479, 532, 725, 1159, 2195
BslFI	GGGAC	7 cut(s)	111, 196, 344, 836, 1304, 1806, 1925
BslI	CCNNNNNNNGG	7 cut(s)	184, 410, 499, 1143, 1483, 1945, 2201
BsmAI	GTCTC	2 cut(s)	1501, 2208
BsmFI	GGGAC	7 cut(s)	111, 196, 344, 836, 1304, 1806, 1925
BsnI	GGCC	8 cut(s)	153, 531, 736, 810, 828, 1907, 1949, 2249
BsoBI	CYCGRG	3 cut(s)	179, 497, 1158
Bsp119I	TTCGAA	1 cut(s)	909
Bsp1286I	GDGCHC	3 cut(s)	567, 1323, 1762
Bsp13I	TCCGGA	1 cut(s)	2194
Bsp1407I	TGTACA	1 cut(s)	58
Bsp143I	GATC	9 cut(s)	88, 330, 596, 872, 966, 979, 1255, 1368, 1786
Bsp19I	CCATGG	2 cut(s)	1044, 1950
BspACI	CCGC	5 cut(s)	137, 372, 396, 680, 2078
BspANI	GGCC	8 cut(s)	153, 531, 736, 810, 828, 1907, 1949, 2249
BspCNI	CTCAG	2 cut(s)	183, 2173
BspEI	TCCGGA	1 cut(s)	2194
BspLI	GGNNCC	5 cut(s)	360, 1071, 1135, 1458, 1699
BspMAI	CTGCAG	2 cut(s)	1115, 1366
BspMI	ACCTGC	1 cut(s)	1343
BspOI	GCTAGC	1 cut(s)	1206
BspPI	GGATC	5 cut(s)	325, 880, 974, 1250, 1794
BspT104I	TTCGAA	1 cut(s)	909
BspT107I	GGYRCC	1 cut(s)	1133
BspTI	CTTAAG	1 cut(s)	568
BsrDI	GCAATG	2 cut(s)	951, 1644
BsrFI	RCCGGY	2 cut(s)	338, 531
BsrGI	TGTACA	1 cut(s)	58
BsrI	ACTGG	5 cut(s)	105, 583, 737, 1701, 1995
BssAI	RCCGGY	2 cut(s)	338, 531
BssMI	GATC	9 cut(s)	88, 330, 596, 872, 966, 979, 1255, 1368, 1786
BssNAI	GTATAC	1 cut(s)	143
BssT1I	CCWWGG	4 cut(s)	157, 1044, 1129, 1950
Bst1107I	GTATAC	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	1909
Bst4CI	ACNGT	5 cut(s)	224, 445, 1495, 1933, 2167
Bst6I	CTCTTC	1 cut(s)	2106
BstAFI	CTTAAG	1 cut(s)	568
BstAUI	TGTACA	1 cut(s)	58
BstBI	TTCGAA	1 cut(s)	909
BstC8I	GCNNGC	6 cut(s)	1204, 1276, 1362, 1631, 1635, 2223
BstDEI	CTNAG	2 cut(s)	170, 2160
BstDSI	CCRYGG	2 cut(s)	1044, 1950
BstENI	CCTNNNNNAGG	1 cut(s)	497
BstF5I	GGATG	5 cut(s)	16, 605, 1338, 1652, 1999
BstH2I	RGCGCY	1 cut(s)	1249
BstHHI	GCGC	1 cut(s)	1248
BstKTI	GATC	9 cut(s)	91, 333, 599, 875, 969, 982, 1258, 1371, 1789
BstMAI	GTCTC	2 cut(s)	1501, 2208
BstMBI	GATC	9 cut(s)	88, 330, 596, 872, 966, 979, 1255, 1368, 1786
BstMWI	GCNNNNNNNGC	5 cut(s)	127, 159, 537, 854, 950
BstNI	CCWGG	1 cut(s)	1909
BstNSI	RCATGY	2 cut(s)	1360, 1585
BstSCI	CCNGG	6 cut(s)	178, 179, 723, 1157, 1158, 1907
BstSFI	CTRYAG	4 cut(s)	216, 1111, 1362, 1848
BstV1I	GCAGC	2 cut(s)	1097, 1397
BstV2I	GAAGAC	5 cut(s)	374, 725, 1626, 1722, 1846
BstXI	CCANNNNNNTGG	1 cut(s)	1903
BstZ17I	GTATAC	1 cut(s)	143
BsuI	GTATCC	1 cut(s)	1787
BsuRI	GGCC	8 cut(s)	153, 531, 736, 810, 828, 1907, 1949, 2249
BtgI	CCRYGG	2 cut(s)	1044, 1950
BtsCI	GGATG	5 cut(s)	16, 605, 1338, 1652, 1999
BtsI	GCAGTG	2 cut(s)	41, 1371
BtsIMutI	CAGTG	3 cut(s)	41, 1371, 1750
BveI	ACCTGC	1 cut(s)	1343
Cac8I	GCNNGC	6 cut(s)	1204, 1276, 1362, 1631, 1635, 2223
CaiI	CAGNNNCTG	1 cut(s)	404
CfoI	GCGC	1 cut(s)	1248
Cfr10I	RCCGGY	2 cut(s)	338, 531
Cfr13I	GGNCC	7 cut(s)	358, 401, 529, 827, 1698, 1806, 2075
Cfr9I	CCCGGG	2 cut(s)	179, 1158
Csp6I	GTAC	6 cut(s)	59, 342, 641, 1147, 1424, 1748
CspAI	ACCGGT	1 cut(s)	338
CspCI	CAANNNNNGTGG	2 cut(s)	1798, 1833
CviAII	CATG	9 cut(s)	626, 1045, 1357, 1502, 1582, 1612, 1616, 1951, 2027
CviQI	GTAC	6 cut(s)	59, 342, 641, 1147, 1424, 1748
DdeI	CTNAG	2 cut(s)	170, 2160
DpnI	GATC	9 cut(s)	90, 332, 598, 874, 968, 981, 1257, 1370, 1788
DpnII	GATC	9 cut(s)	88, 330, 596, 872, 966, 979, 1255, 1368, 1786
DraIII	CACNNNGTG	1 cut(s)	1480
DrdI	GACNNNNNNGTC	1 cut(s)	1800
DseDI	GACNNNNNNGTC	1 cut(s)	1800
EaeI	YGGCCR	4 cut(s)	151, 808, 1905, 1947
Eam1104I	CTCTTC	1 cut(s)	2106
EarI	CTCTTC	1 cut(s)	2106
Ecl136II	GAGCTC	3 cut(s)	565, 1321, 1760
Eco130I	CCWWGG	4 cut(s)	157, 1044, 1129, 1950
Eco147I	AGGCCT	1 cut(s)	2249
Eco24I	GRGCYC	3 cut(s)	567, 1323, 1762
Eco47I	GGWCC	5 cut(s)	358, 401, 1698, 1806, 2075
Eco53kI	GAGCTC	3 cut(s)	565, 1321, 1760
Eco57I	CTGAAG	2 cut(s)	527, 1726
Eco88I	CYCGRG	3 cut(s)	179, 497, 1158
EcoICRI	GAGCTC	3 cut(s)	565, 1321, 1760
EcoNI	CCTNNNNNAGG	1 cut(s)	497
EcoO109I	RGGNCCY	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	1907
EcoT14I	CCWWGG	4 cut(s)	157, 1044, 1129, 1950
EcoT22I	ATGCAT	4 cut(s)	13, 1087, 1302, 1617
EcoT38I	GRGCYC	3 cut(s)	567, 1323, 1762
ErhI	CCWWGG	4 cut(s)	157, 1044, 1129, 1950
FaeI	CATG	9 cut(s)	629, 1048, 1360, 1505, 1585, 1615, 1619, 1954, 2030
FalI	AAGNNNNNCTT	4 cut(s)	1058, 1090, 1747, 1779
FaqI	GGGAC	7 cut(s)	111, 196, 344, 836, 1304, 1806, 1925
FatI	CATG	9 cut(s)	625, 1044, 1356, 1501, 1581, 1611, 1615, 1950, 2026
FauI	CCCGC	1 cut(s)	130
FauNDI	CATATG	2 cut(s)	940, 1625
FbaI	TGATCA	1 cut(s)	1368
FblI	GTMKAC	2 cut(s)	142, 219
Fnu4HI	GCNGC	2 cut(s)	1111, 1386
FokI	GGATG	5 cut(s)	3, 592, 1325, 1639, 2006
FriOI	GRGCYC	3 cut(s)	567, 1323, 1762
Fsp4HI	GCNGC	2 cut(s)	1111, 1386
FspBI	CTAG	1 cut(s)	1203
GlaI	GCGC	1 cut(s)	1247
GluI	GCNGC	2 cut(s)	1111, 1386
GsaI	CCCAGC	1 cut(s)	857
GsuI	CTGGAG	1 cut(s)	566
HaeII	RGCGCY	1 cut(s)	1249
HaeIII	GGCC	8 cut(s)	153, 531, 736, 810, 828, 1907, 1949, 2249
HapII	CCGG	8 cut(s)	20, 180, 339, 479, 532, 725, 1159, 2195
HhaI	GCGC	1 cut(s)	1248
Hin1II	CATG	9 cut(s)	629, 1048, 1360, 1505, 1585, 1615, 1619, 1954, 2030
Hin6I	GCGC	1 cut(s)	1246
HinP1I	GCGC	1 cut(s)	1246
HincII	GTYRAC	2 cut(s)	592, 1929
HindII	GTYRAC	2 cut(s)	592, 1929
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	7 cut(s)	264, 1169, 1178, 1528, 1709, 1913, 2153
HpaI	GTTAAC	2 cut(s)	592, 1929
HpaII	CCGG	8 cut(s)	20, 180, 339, 479, 532, 725, 1159, 2195
HphI	GGTGA	7 cut(s)	260, 328, 1324, 2045, 2077, 2148, 2220
Hpy188I	TCNGA	7 cut(s)	67, 117, 523, 971, 1714, 2163, 2179
Hpy188III	TCNNGA	6 cut(s)	227, 497, 742, 786, 1263, 2195
Hpy99I	CGWCG	1 cut(s)	1921
HpyAV	CCTTC	7 cut(s)	122, 503, 614, 1269, 1281, 2002, 2030
HpyCH4III	ACNGT	5 cut(s)	224, 445, 1495, 1933, 2167
HpyCH4IV	ACGT	3 cut(s)	322, 353, 666
HpyF10VI	GCNNNNNNNGC	5 cut(s)	127, 159, 537, 854, 950
HpyF3I	CTNAG	2 cut(s)	170, 2160
HpySE526I	ACGT	3 cut(s)	322, 353, 666
Hsp92II	CATG	9 cut(s)	629, 1048, 1360, 1505, 1585, 1615, 1619, 1954, 2030
HspAI	GCGC	1 cut(s)	1246
Kpn2I	TCCGGA	1 cut(s)	2194
Ksp22I	TGATCA	1 cut(s)	1368
KspAI	GTTAAC	2 cut(s)	592, 1929
Kzo9I	GATC	9 cut(s)	88, 330, 596, 872, 966, 979, 1255, 1368, 1786
LmnI	GCTCC	4 cut(s)	516, 1057, 1462, 1765
Lsp1109I	GCAGC	2 cut(s)	1097, 1397
LweI	GCATC	8 cut(s)	108, 1072, 1347, 1372, 1984, 2234, 2253, 2276
MaeI	CTAG	1 cut(s)	1203
MaeII	ACGT	3 cut(s)	322, 353, 666
MaeIII	GTNAC	8 cut(s)	22, 448, 662, 667, 931, 1192, 1213, 2154
MalI	GATC	9 cut(s)	90, 332, 598, 874, 968, 981, 1257, 1370, 1788
MboI	GATC	9 cut(s)	88, 330, 596, 872, 966, 979, 1255, 1368, 1786
MboII	GAAGA	9 cut(s)	94, 324, 374, 730, 896, 1631, 1727, 1846, 2123
MfeI	CAATTG	1 cut(s)	44
MhlI	GDGCHC	3 cut(s)	567, 1323, 1762
MlsI	TGGCCA	3 cut(s)	810, 1907, 1949
MluCI	AATT	9 cut(s)	44, 234, 517, 600, 890, 1326, 1439, 1573, 2189
MluNI	TGGCCA	3 cut(s)	810, 1907, 1949
MlyI	GAGTC	4 cut(s)	258, 1718, 1907, 2162
MmeI	TCCRAC	2 cut(s)	177, 1692
Mox20I	TGGCCA	3 cut(s)	810, 1907, 1949
Mph1103I	ATGCAT	4 cut(s)	13, 1087, 1302, 1617
MroI	TCCGGA	1 cut(s)	2194
MroXI	GAANNNNTTC	3 cut(s)	793, 915, 2012
MscI	TGGCCA	3 cut(s)	810, 1907, 1949
MslI	CAYNNNNRTG	5 cut(s)	284, 804, 1022, 2031, 2258
Msp20I	TGGCCA	3 cut(s)	810, 1907, 1949
MspA1I	CMGCKG	2 cut(s)	372, 857
MspCI	CTTAAG	1 cut(s)	568
MspI	CCGG	8 cut(s)	20, 180, 339, 479, 532, 725, 1159, 2195
MspR9I	CCNGG	6 cut(s)	180, 181, 725, 1159, 1160, 1909
MunI	CAATTG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	1909
MwoI	GCNNNNNNNGC	5 cut(s)	127, 159, 537, 854, 950
NciI	CCSGG	5 cut(s)	180, 181, 725, 1159, 1160
NcoI	CCATGG	2 cut(s)	1044, 1950
NdeI	CATATG	2 cut(s)	940, 1625
NdeII	GATC	9 cut(s)	88, 330, 596, 872, 966, 979, 1255, 1368, 1786
NheI	GCTAGC	1 cut(s)	1202
NlaIII	CATG	9 cut(s)	629, 1048, 1360, 1505, 1585, 1615, 1619, 1954, 2030
NlaIV	GGNNCC	5 cut(s)	360, 1071, 1135, 1458, 1699
NmeAIII	GCCGAG	1 cut(s)	129
NmuCI	GTSAC	5 cut(s)	448, 931, 1192, 1213, 2154
NsiI	ATGCAT	4 cut(s)	13, 1087, 1302, 1617
NspI	RCATGY	2 cut(s)	1360, 1585
NspV	TTCGAA	1 cut(s)	909
PaeR7I	CTCGAG	1 cut(s)	497
PaqCI	CACCTGC	1 cut(s)	1343
PceI	AGGCCT	1 cut(s)	2249
PcsI	WCGNNNNNNNCGW	1 cut(s)	1278
PdmI	GAANNNNTTC	3 cut(s)	793, 915, 2012
PfeI	GAWTC	3 cut(s)	1169, 1178, 1528
PflMI	CCANNNNNTGG	1 cut(s)	1945
PinAI	ACCGGT	1 cut(s)	338
PkrI	GCNGC	2 cut(s)	1112, 1387
PleI	GAGTC	4 cut(s)	258, 1717, 1907, 2161
PpsI	GAGTC	4 cut(s)	258, 1717, 1907, 2161
PpuMI	RGGWCCY	1 cut(s)	401
PshBI	ATTAAT	2 cut(s)	1413, 1442
Psp124BI	GAGCTC	3 cut(s)	567, 1323, 1762
Psp5II	RGGWCCY	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	1907
PspFI	CCCAGC	1 cut(s)	853
PspGI	CCWGG	1 cut(s)	1907
PspN4I	GGNNCC	5 cut(s)	360, 1071, 1135, 1458, 1699
PspPI	GGNCC	7 cut(s)	358, 401, 529, 827, 1698, 1806, 2075
PspPPI	RGGWCCY	1 cut(s)	401
PsrI	GAACNNNNNNTAC	4 cut(s)	225, 257, 979, 1011
PstI	CTGCAG	2 cut(s)	1115, 1366
PstNI	CAGNNNCTG	1 cut(s)	404
PvuII	CAGCTG	1 cut(s)	857
RsaI	GTAC	6 cut(s)	60, 343, 642, 1148, 1425, 1749
RsaNI	GTAC	6 cut(s)	59, 342, 641, 1147, 1424, 1748
RseI	CAYNNNNRTG	5 cut(s)	284, 804, 1022, 2031, 2258
SacI	GAGCTC	3 cut(s)	567, 1323, 1762
SatI	GCNGC	2 cut(s)	1111, 1386
Sau3AI	GATC	9 cut(s)	88, 330, 596, 872, 966, 979, 1255, 1368, 1786
Sau96I	GGNCC	7 cut(s)	358, 401, 529, 827, 1698, 1806, 2075
SchI	GAGTC	4 cut(s)	258, 1718, 1907, 2162
ScrFI	CCNGG	6 cut(s)	180, 181, 725, 1159, 1160, 1909
SduI	GDGCHC	3 cut(s)	567, 1323, 1762
SfaNI	GCATC	8 cut(s)	108, 1072, 1347, 1372, 1984, 2234, 2253, 2276
SfcI	CTRYAG	4 cut(s)	216, 1111, 1362, 1848
Sfr274I	CTCGAG	1 cut(s)	497
SfuI	TTCGAA	1 cut(s)	909
SinI	GGWCC	5 cut(s)	358, 401, 1698, 1806, 2075
SlaI	CTCGAG	1 cut(s)	497
SmaI	CCCGGG	2 cut(s)	181, 1160
SmiMI	CAYNNNNRTG	5 cut(s)	284, 804, 1022, 2031, 2258
SmlI	CTYRAG	2 cut(s)	497, 568
SmoI	CTYRAG	2 cut(s)	497, 568
Sse9I	AATT	9 cut(s)	44, 234, 517, 600, 890, 1326, 1439, 1573, 2189
SseBI	AGGCCT	1 cut(s)	2249
SsiI	CCGC	5 cut(s)	137, 372, 396, 680, 2078
SspI	AATATT	1 cut(s)	1035
SspMI	CTAG	1 cut(s)	1203
SstI	GAGCTC	3 cut(s)	567, 1323, 1762
StuI	AGGCCT	1 cut(s)	2249
StyD4I	CCNGG	6 cut(s)	178, 179, 723, 1157, 1158, 1907
StyI	CCWWGG	4 cut(s)	157, 1044, 1129, 1950
TaaI	ACNGT	5 cut(s)	224, 445, 1495, 1933, 2167
TaiI	ACGT	3 cut(s)	325, 356, 669
TaqI	TCGA	9 cut(s)	498, 909, 965, 1437, 1678, 1688, 1752, 1916, 2238
TaqII	GACCGA	1 cut(s)	1794
TasI	AATT	9 cut(s)	44, 234, 517, 600, 890, 1326, 1439, 1573, 2189
TatI	WGTACW	4 cut(s)	58, 640, 1423, 1747
TfiI	GAWTC	3 cut(s)	1169, 1178, 1528
TscAI	CASTG	3 cut(s)	41, 1371, 1750
TseFI	GTSAC	5 cut(s)	448, 931, 1192, 1213, 2154
TseI	GCWGC	2 cut(s)	1110, 1385
Tsp45I	GTSAC	5 cut(s)	448, 931, 1192, 1213, 2154
TspDTI	ATGAA	6 cut(s)	594, 633, 809, 1632, 1664, 1974
TspGWI	ACGGA	3 cut(s)	200, 1044, 1759
TspMI	CCCGGG	2 cut(s)	179, 1158
TspRI	CASTG	3 cut(s)	41, 1371, 1750
Van91I	CCANNNNNTGG	1 cut(s)	1945
Vha464I	CTTAAG	1 cut(s)	568
VpaK11BI	GGWCC	5 cut(s)	358, 401, 1698, 1806, 2075
VspI	ATTAAT	2 cut(s)	1413, 1442
XagI	CCTNNNNNAGG	1 cut(s)	497
XapI	RAATTY	3 cut(s)	890, 1326, 2189
XceI	RCATGY	2 cut(s)	1360, 1585
XcmI	CCANNNNNNNNNTGG	2 cut(s)	702, 769
XhoI	CTCGAG	1 cut(s)	497
XmaI	CCCGGG	2 cut(s)	179, 1158
XmiI	GTMKAC	2 cut(s)	142, 219
XmnI	GAANNNNTTC	3 cut(s)	793, 915, 2012
XspI	CTAG	1 cut(s)	1203
Zsp2I	ATGCAT	4 cut(s)	13, 1087, 1302, 1617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.