Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001192

Physical Location & Seq

Genomic Coordinates Reverse (-)

78579288 .. 78595166

Gene Structure 15879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG501600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2511 bp

ATGGGAGATGCATATCATCCGGTAACTATTGGGCAGTGTATTCAATTGCCTCCCAACGTACATTCGGAGGGAATAAAAGGGAAGAAAGATCTTTGGGGACTGGGGTTTTCCCTTCCAATGCTGGAAATGCAGATGGCCATCATTTTCATCGTCACCCAAGTCCTCCATTTAATTTTGAAGAAGTTTCATATCTCTAAGTTCAACAGCCAGCTTCTTGCGGGTATACTCCTCAGCCACCTTTGCAAAAACCTCAGCCTCCTCGGGACGGATAAGAAGTTGGACGCTCTAACATTTCCTGTAGACAGTCAAGAAGTAATTAGTGTTCTGGGTGAGCTTGGCTTTGGACTCTTTCTGTTCGTCATTGGAGTGAAAATGGAGGTGGAAATGATAAGAAGAATAGGACGTAAAGCGATCCTCACCGGTACTTTATGCACGTTGGTCCCTTTGGTCAGCGGTATAAGTCTTCAAAAGCTTACCGCAGGACCTGTATTTGGCATTGACAAGGAAAAAAACGACAGGCTTACGGTTGTGACTGCCATACATACACTAACTTTTTTTCCGGTTGTTTCTCTCCTTCTCGAGGAACTGAAGCTCCTCAATTCTGAAATCGGCCGGTTAAGCCTGACTGCTACAATAGTCTGTGAGCTCTTAAGTTTGTTTCTCCAGTTTGTTAACAGATCAATTTCATCCATAACTAATGAAGGACATCAGAAGGATTTAGTACACCTCGCAATAGCCTTTGGTTACGTTACTGCTGTTGCAGTAATATTTAGACCAATAATGTTATGGGTTGTTAGGAAGACCCCGGACAACAGGCCTGTCAAGAAAATCTATCTCAATGCCATAGTCCTGCTGGTGTTTGTGTCTGGAATAGGTTCACATATATACGGCCAGACATTTCATTTTGGCCCTCTCATATTTGGTTTGGCTGTCCCAGCTGGACAACCTCTGGGATCGGCTTTGGAAGAAAAATTCCATCTCTTTGTTTTCGAAGTGTTTCTACCCCTTTTTGTGACTACATATGCAATGAGGGCTGATTTTGGGTCGATCAGATTGGACGATCCAAGAACACAGCTTACTATATTCCTCATAGTTCTCATTTTTGTGGTCAAAATATTAGCCACCATGGTCGCTCCGTTATATTTTAAGGTTCCCTTAACCGATGCTTTTGTTCTTGCTCTCATTTTGAGCTGCAGAGGGATTATCCACCTTGGCACCTATACTTGGTACAGCGACACCCGGATGATAGATGATTCTGCTGATTCTGTGTATGCTGTGACACTCGCTAGCGTTGTAGTGACTTCAACTCTCGTGCCTATTATAGTGAAGCGCCTCTATGATCCTTCAAGAAAATACGCAGGCTACGAGAGAAGGGACATTATGCATTTGAAACCTAATGCAGAGCTCAAAATTCTCACCTGCATCCACAGGTCATCTAACATGCCTGCAGTGATCAATCTACTTGATGCAGCATGTCCATCTAAAGAAAACCCCATTAATGTTTGTGTACTCCATCTCATCGAATTAATCGGCAGAACGGCTCCCATATTTATCTCCCACCAAGTGAAGGGGAAAACAGTTTCCCATGTTAATACATATTCAGCAAATGTGATTCTTTATTTCAATCAGTTTGAGAAAGAAAATCGTGGTGCTGTTAATTTGAGCATATTCACAGCAATCTCTCCACCAAATATTATGCATGAAGACATATGCACGCTTGCAATGGACAAGCTCACATCCCTAATAATCCTCCCATTTCATCGAAAATGGTCGATTGACGGGTCCAGTATTGAGTCGGAAGACAATACTATAAGGACACTAAACTTCAGTGTACTCGAAAGAGCTCCTTGTTCCGTTGGTATCCTTGTGGATCGGGGACATTTAGGTCGGTCCACCTCTGTTGTATCCACACTATCAACATTTTCGGTTGCTGTAGTCTTCTTGGGAGGGAAAGATGACAGGGAGGCATTGACCTTTGCCAAAAGAATGGCCAGGGACTCGACGATTAGGTTAACAGTAATCCATTTAGTGGCCATGGGTAATGAATATGCTGGTGGGGAATGGGATAAAATACTGGATGCAGAGGTATTGAAGGAGTTCAAATATAACCATGTGGGTGAAGGTCTTGTAATATATTTAGAGGAAATGGTGAAAGATGGACCGCAAACAGCCTTTCTATTAAGGTCTATGATGGAAGAGTATGATATAATCATAGTTGGGAGAAGTCATAAGTTAGAGTCACCTCAGACAGTAGGGCTTTCCGAATGGTGCGAATTTCCGGAGTTGGGGATAATAGGAGACTTGCTTGCATCACCTGATGTCGATTCCTTGGTCCTTCAAGGTTTCCGTTATGGATTCATGCCTCAGATTGAGATTCCCTCAATACTTGTGAGAAAATGCTTTTCACTTTGGCCCAATAATCCAGGTGGAGGTGTTTGTGTTGGTGAAGATGTTGAACTCGCAACGTTGGTGCAGGCAAAGGGCCTTGGTTTGAGATCAGCTTGTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

836

Amino Acids

92.45

Weight (kDa)

6.91

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	54 - 443	1.9e-30	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	503 - 630	3e-12	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	641 - 776	1.9e-07	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44900 AT5G22900
fragaria_vesca	FvH4_3g06341 FvH4_3g23050 FvH4_3g39831 FvH4_6g14510 FvH4_7g14610
malus_domestica	MD02G1295300.v1.1 MD03G1057300.v1.1 MD05G1291400.v1.1 MD10G1267300.v1.1 MD11G1059200.v1.1 MD14G1082300.v1.1
prunus_persica	Prupe.1G346300_v2.0.a1 Prupe.2G029000_v2.0.a1 Prupe.4G074200_v2.0.a1 Prupe.6G047400_v2.0.a1 Prupe.6G047500_v2.0.a1 Prupe.6G047600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0356111 RchiOBHm_Chr1g0356121 RchiOBHm_Chr4g0446581 RchiOBHm_Chr5g0071781
rosa_laevigata	RLG00000005649 RLG00000028106 RLG00000036246 RLG00000036247 RLG00000036248
rosa_multiflora	Rmu_sc0001113.1_g000009 Rmu_sc0002569.1_g000023 Rmu_sc0003229.1_g000013 Rmu_sc0036166.1_g000001 Rmu_ssc0000144.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009380 Rroxscaffold_1G00009410 Rroxscaffold_4G00299800 Rroxscaffold_5G00386970
rosa_rugosa	Rorug04G0372400 Rorug05G0414600 Rorug05G0414700
rosa_samantha	Rh1AG262500 Rh1BG231000 Rh1CG245800 Rh4AG434100 Rh4BG443300 Rh4CG460600 Rh4DG442100 Rh5AG470700 Rh5BG490400 Rh5CG514400 Rh5DG501400 Rh5DG501600 Rh5DG501700
rosa_wichuraiana	Rw1G023190 Rw4G037110 Rw5G043740 Rw5G043750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1427
AasI	GACNNNNNNGTC	1 cut(s)	1884
Acc36I	ACCTGC	1 cut(s)	1427
AccB1I	GGYRCC	1 cut(s)	1214
AccB7I	CCANNNNNTGG	1 cut(s)	2029
AccI	GTMKAC	2 cut(s)	223, 300
AccIII	TCCGGA	1 cut(s)	2278
AciI	CCGC	4 cut(s)	218, 453, 477, 2162
AclI	AACGTT	1 cut(s)	2465
AclWI	GGATC	5 cut(s)	406, 961, 1055, 1334, 1878
AcoI	YGGCCR	5 cut(s)	135, 610, 889, 1989, 2031
AcsI	RAATTY	3 cut(s)	971, 1410, 2273
AcuI	CTGAAG	2 cut(s)	608, 1810
AdeI	CACNNNGTG	1 cut(s)	1564
AfaI	GTAC	6 cut(s)	60, 424, 723, 1229, 1509, 1833
AfiI	CCNNNNNNNGG	8 cut(s)	265, 491, 580, 1224, 1567, 2029, 2285, 2429
AflII	CTTAAG	1 cut(s)	649
AgeI	ACCGGT	1 cut(s)	419
AjnI	CCWGG	2 cut(s)	1991, 2422
AloI	GAACNNNNNNTCC	2 cut(s)	576, 608
Alw21I	GWGCWC	3 cut(s)	648, 1407, 1846
Alw26I	GTCTC	1 cut(s)	2292
AlwI	GGATC	5 cut(s)	406, 961, 1055, 1334, 1878
AlwNI	CAGNNNCTG	1 cut(s)	485
Ama87I	CYCGRG	2 cut(s)	260, 578
Aor13HI	TCCGGA	1 cut(s)	2278
AoxI	GGCC	9 cut(s)	135, 610, 815, 889, 907, 1989, 2031, 2411, 2482
ApeKI	GCWGC	2 cut(s)	1191, 1469
ApoI	RAATTY	3 cut(s)	971, 1410, 2273
AseI	ATTAAT	2 cut(s)	1497, 1526
AsiGI	ACCGGT	1 cut(s)	419
Asp700I	GAANNNNTTC	3 cut(s)	874, 996, 2096
AspLEI	GCGC	1 cut(s)	1332
AspS9I	GGNCC	9 cut(s)	439, 482, 908, 1782, 1890, 2159, 2332, 2412, 2482
AsuC2I	CCSGG	2 cut(s)	806, 1240
AsuHPI	GGTGA	9 cut(s)	145, 341, 409, 1408, 2129, 2161, 2232, 2304, 2456
AsuII	TTCGAA	1 cut(s)	990
AsuNHI	GCTAGC	1 cut(s)	1286
AvaI	CYCGRG	2 cut(s)	260, 578
AvaII	GGWCC	6 cut(s)	439, 482, 1782, 1890, 2159, 2332
BalI	TGGCCA	3 cut(s)	137, 1991, 2033
BanI	GGYRCC	1 cut(s)	1214
BanII	GRGCYC	3 cut(s)	648, 1407, 1846
BarI	GAAGNNNNNNTAC	2 cut(s)	984, 1016
BauI	CACGAG	1 cut(s)	1310
BbsI	GAAGAC	5 cut(s)	455, 806, 1710, 1806, 1930
Bbv12I	GWGCWC	3 cut(s)	648, 1407, 1846
BbvCI	CCTCAGC	2 cut(s)	230, 251
BbvI	GCAGC	2 cut(s)	1178, 1481
BccI	CCATC	7 cut(s)	127, 146, 984, 1486, 1521, 2150, 2185
BceAI	ACGGC	2 cut(s)	904, 1554
BciT130I	CCWGG	2 cut(s)	1993, 2424
BciVI	GTATCC	2 cut(s)	1871, 1915
BclI	TGATCA	1 cut(s)	1452
BcnI	CCSGG	2 cut(s)	806, 1240
BcoDI	GTCTC	1 cut(s)	2292
BfaI	CTAG	1 cut(s)	1287
BfmI	CTRYAG	4 cut(s)	297, 1192, 1446, 1932
BfoI	RGCGCY	1 cut(s)	1333
BfrI	CTTAAG	1 cut(s)	649
BfuAI	ACCTGC	1 cut(s)	1427
BfuI	GTATCC	2 cut(s)	1871, 1915
BglII	AGATCT	1 cut(s)	88
BisI	GCNGC	2 cut(s)	1192, 1470
BlsI	GCNGC	2 cut(s)	1193, 1471
Bme1390I	CCNGG	4 cut(s)	806, 1240, 1993, 2424
Bme18I	GGWCC	6 cut(s)	439, 482, 1782, 1890, 2159, 2332
BmeT110I	CYCGRG	2 cut(s)	260, 578
BmgT120I	GGNCC	9 cut(s)	439, 482, 908, 1782, 1890, 2159, 2332, 2412, 2482
BmiI	GGNNCC	5 cut(s)	441, 1152, 1216, 1542, 1783
BmrFI	CCNGG	4 cut(s)	806, 1240, 1993, 2424
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	5 cut(s)	1153, 1431, 1456, 2068, 2318
BmtI	GCTAGC	1 cut(s)	1290
BmuI	ACTGGG	1 cut(s)	110
BpiI	GAAGAC	5 cut(s)	455, 806, 1710, 1806, 1930
BplI	GAGNNNNNCTC	2 cut(s)	2363, 2395
BpmI	CTGGAG	1 cut(s)	647
Bpu10I	CCTNAGC	2 cut(s)	230, 251
Bpu14I	TTCGAA	1 cut(s)	990
BpuMI	CCSGG	2 cut(s)	806, 1240
BsaBI	GATNNNNATC	2 cut(s)	12, 137
BsaJI	CCNNGG	8 cut(s)	259, 804, 1125, 1210, 1992, 2034, 2328, 2485
BsaWI	WCCGGW	4 cut(s)	19, 419, 559, 2278
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bsc4I	CCNNNNNNNGG	8 cut(s)	265, 491, 580, 1224, 1567, 2029, 2285, 2429
Bse118I	RCCGGY	2 cut(s)	419, 612
Bse1I	ACTGG	4 cut(s)	105, 664, 1785, 2079
Bse3DI	GCAATG	2 cut(s)	1032, 1728
Bse8I	GATNNNNATC	2 cut(s)	12, 137
BseAI	TCCGGA	1 cut(s)	2278
BseBI	CCWGG	2 cut(s)	1993, 2424
BseDI	CCNNGG	8 cut(s)	259, 804, 1125, 1210, 1992, 2034, 2328, 2485
BseGI	GGATG	6 cut(s)	16, 686, 1248, 1422, 1736, 2083
BseJI	GATNNNNATC	2 cut(s)	12, 137
BseLI	CCNNNNNNNGG	8 cut(s)	265, 491, 580, 1224, 1567, 2029, 2285, 2429
BseMI	GCAATG	2 cut(s)	1032, 1728
BseMII	CTCAG	4 cut(s)	244, 265, 2258, 2378
BseNI	ACTGG	4 cut(s)	105, 664, 1785, 2079
BseRI	GAGGAG	3 cut(s)	218, 248, 584
BseX3I	CGGCCG	1 cut(s)	610
BseXI	GCAGC	2 cut(s)	1178, 1481
BseYI	CCCAGC	1 cut(s)	934
BsgI	GTGCAG	1 cut(s)	2492
Bsh1285I	CGRYCG	1 cut(s)	613
BshFI	GGCC	9 cut(s)	137, 612, 817, 891, 909, 1991, 2033, 2413, 2484
BshNI	GGYRCC	1 cut(s)	1214
BshTI	ACCGGT	1 cut(s)	419
BsiEI	CGRYCG	1 cut(s)	613
BsiHKAI	GWGCWC	3 cut(s)	648, 1407, 1846
BsiHKCI	CYCGRG	2 cut(s)	260, 578
BsiSI	CCGG	7 cut(s)	20, 420, 560, 613, 806, 1240, 2279
BslFI	GGGAC	7 cut(s)	111, 277, 425, 917, 1388, 1890, 2009
BslI	CCNNNNNNNGG	8 cut(s)	265, 491, 580, 1224, 1567, 2029, 2285, 2429
BsmAI	GTCTC	1 cut(s)	2292
BsmFI	GGGAC	7 cut(s)	111, 277, 425, 917, 1388, 1890, 2009
BsnI	GGCC	9 cut(s)	137, 612, 817, 891, 909, 1991, 2033, 2413, 2484
BsoBI	CYCGRG	2 cut(s)	260, 578
Bsp119I	TTCGAA	1 cut(s)	990
Bsp1286I	GDGCHC	3 cut(s)	648, 1407, 1846
Bsp13I	TCCGGA	1 cut(s)	2278
Bsp19I	CCATGG	2 cut(s)	1125, 2034
BspACI	CCGC	4 cut(s)	218, 453, 477, 2162
BspANI	GGCC	9 cut(s)	137, 612, 817, 891, 909, 1991, 2033, 2413, 2484
BspCNI	CTCAG	4 cut(s)	243, 264, 2257, 2377
BspEI	TCCGGA	1 cut(s)	2278
BspLI	GGNNCC	5 cut(s)	441, 1152, 1216, 1542, 1783
BspMAI	CTGCAG	2 cut(s)	1196, 1450
BspMI	ACCTGC	1 cut(s)	1427
BspOI	GCTAGC	1 cut(s)	1290
BspPI	GGATC	5 cut(s)	406, 961, 1055, 1334, 1878
BspT104I	TTCGAA	1 cut(s)	990
BspT107I	GGYRCC	1 cut(s)	1214
BspTI	CTTAAG	1 cut(s)	649
BsrDI	GCAATG	2 cut(s)	1032, 1728
BsrFI	RCCGGY	2 cut(s)	419, 612
BsrI	ACTGG	4 cut(s)	105, 664, 1785, 2079
BssAI	RCCGGY	2 cut(s)	419, 612
BssECI	CCNNGG	8 cut(s)	259, 804, 1125, 1210, 1992, 2034, 2328, 2485
BssNAI	GTATAC	1 cut(s)	224
BssSI	CACGAG	1 cut(s)	1310
BssT1I	CCWWGG	5 cut(s)	1125, 1210, 2034, 2328, 2485
Bst1107I	GTATAC	1 cut(s)	224
Bst2BI	CACGAG	1 cut(s)	1310
Bst2UI	CCWGG	2 cut(s)	1993, 2424
Bst4CI	ACNGT	5 cut(s)	305, 526, 1579, 2017, 2251
Bst6I	CTCTTC	1 cut(s)	2190
BstAFI	CTTAAG	1 cut(s)	649
BstBI	TTCGAA	1 cut(s)	990
BstC8I	GCNNGC	8 cut(s)	209, 1288, 1360, 1446, 1715, 1719, 2307, 2475
BstDEI	CTNAG	6 cut(s)	195, 230, 251, 2244, 2364, 2508
BstDSI	CCRYGG	2 cut(s)	1125, 2034
BstENI	CCTNNNNNAGG	1 cut(s)	578
BstF5I	GGATG	6 cut(s)	16, 686, 1248, 1422, 1736, 2083
BstH2I	RGCGCY	1 cut(s)	1333
BstHHI	GCGC	1 cut(s)	1332
BstMAI	GTCTC	1 cut(s)	2292
BstMCI	CGRYCG	1 cut(s)	613
BstMWI	GCNNNNNNNGC	5 cut(s)	127, 240, 618, 935, 1031
BstNI	CCWGG	2 cut(s)	1993, 2424
BstNSI	RCATGY	2 cut(s)	1444, 1476
BstSCI	CCNGG	4 cut(s)	804, 1238, 1991, 2422
BstSFI	CTRYAG	4 cut(s)	297, 1192, 1446, 1932
BstV1I	GCAGC	2 cut(s)	1178, 1481
BstV2I	GAAGAC	5 cut(s)	455, 806, 1710, 1806, 1930
BstX2I	RGATCY	1 cut(s)	88
BstXI	CCANNNNNNTGG	1 cut(s)	1987
BstYI	RGATCY	1 cut(s)	88
BstZ17I	GTATAC	1 cut(s)	224
BstZI	CGGCCG	1 cut(s)	610
BsuI	GTATCC	2 cut(s)	1871, 1915
BsuRI	GGCC	9 cut(s)	137, 612, 817, 891, 909, 1991, 2033, 2413, 2484
BtgI	CCRYGG	2 cut(s)	1125, 2034
BtsCI	GGATG	6 cut(s)	16, 686, 1248, 1422, 1736, 2083
BtsI	GCAGTG	2 cut(s)	41, 1455
BtsIMutI	CAGTG	3 cut(s)	41, 1455, 1834
BveI	ACCTGC	1 cut(s)	1427
Cac8I	GCNNGC	8 cut(s)	209, 1288, 1360, 1446, 1715, 1719, 2307, 2475
CaiI	CAGNNNCTG	1 cut(s)	485
CfoI	GCGC	1 cut(s)	1332
Cfr10I	RCCGGY	2 cut(s)	419, 612
Cfr13I	GGNCC	9 cut(s)	439, 482, 908, 1782, 1890, 2159, 2332, 2412, 2482
CseI	GACGC	1 cut(s)	290
Csp6I	GTAC	6 cut(s)	59, 423, 722, 1228, 1508, 1832
CspAI	ACCGGT	1 cut(s)	419
CspCI	CAANNNNNGTGG	2 cut(s)	1882, 1917
CviAII	CATG	8 cut(s)	1126, 1441, 1473, 1586, 1700, 2035, 2111, 2359
CviQI	GTAC	6 cut(s)	59, 423, 722, 1228, 1508, 1832
DdeI	CTNAG	6 cut(s)	195, 230, 251, 2244, 2364, 2508
DraIII	CACNNNGTG	1 cut(s)	1564
DrdI	GACNNNNNNGTC	1 cut(s)	1884
DseDI	GACNNNNNNGTC	1 cut(s)	1884
EaeI	YGGCCR	5 cut(s)	135, 610, 889, 1989, 2031
EagI	CGGCCG	1 cut(s)	610
Eam1104I	CTCTTC	1 cut(s)	2190
EarI	CTCTTC	1 cut(s)	2190
Ecl136II	GAGCTC	3 cut(s)	646, 1405, 1844
EclXI	CGGCCG	1 cut(s)	610
Eco130I	CCWWGG	5 cut(s)	1125, 1210, 2034, 2328, 2485
Eco147I	AGGCCT	1 cut(s)	817
Eco24I	GRGCYC	3 cut(s)	648, 1407, 1846
Eco47I	GGWCC	6 cut(s)	439, 482, 1782, 1890, 2159, 2332
Eco52I	CGGCCG	1 cut(s)	610
Eco53kI	GAGCTC	3 cut(s)	646, 1405, 1844
Eco57I	CTGAAG	2 cut(s)	608, 1810
Eco88I	CYCGRG	2 cut(s)	260, 578
EcoICRI	GAGCTC	3 cut(s)	646, 1405, 1844
EcoNI	CCTNNNNNAGG	1 cut(s)	578
EcoO109I	RGGNCCY	2 cut(s)	482, 2482
EcoRII	CCWGG	2 cut(s)	1991, 2422
EcoT14I	CCWWGG	5 cut(s)	1125, 1210, 2034, 2328, 2485
EcoT22I	ATGCAT	3 cut(s)	13, 1386, 1701
EcoT38I	GRGCYC	3 cut(s)	648, 1407, 1846
ErhI	CCWWGG	5 cut(s)	1125, 1210, 2034, 2328, 2485
FaeI	CATG	8 cut(s)	1129, 1444, 1476, 1589, 1703, 2038, 2114, 2362
FalI	AAGNNNNNCTT	4 cut(s)	1139, 1171, 1831, 1863
FaqI	GGGAC	7 cut(s)	111, 277, 425, 917, 1388, 1890, 2009
FatI	CATG	8 cut(s)	1125, 1440, 1472, 1585, 1699, 2034, 2110, 2358
FauI	CCCGC	1 cut(s)	211
FauNDI	CATATG	2 cut(s)	1021, 1709
FbaI	TGATCA	1 cut(s)	1452
FblI	GTMKAC	2 cut(s)	223, 300
Fnu4HI	GCNGC	2 cut(s)	1192, 1470
FokI	GGATG	6 cut(s)	3, 673, 1255, 1409, 1723, 2090
FriOI	GRGCYC	3 cut(s)	648, 1407, 1846
Fsp4HI	GCNGC	2 cut(s)	1192, 1470
FspBI	CTAG	1 cut(s)	1287
GlaI	GCGC	1 cut(s)	1331
GluI	GCNGC	2 cut(s)	1192, 1470
GsaI	CCCAGC	1 cut(s)	938
GsuI	CTGGAG	1 cut(s)	647
HaeII	RGCGCY	1 cut(s)	1333
HaeIII	GGCC	9 cut(s)	137, 612, 817, 891, 909, 1991, 2033, 2413, 2484
HapII	CCGG	7 cut(s)	20, 420, 560, 613, 806, 1240, 2279
HgaI	GACGC	1 cut(s)	290
HhaI	GCGC	1 cut(s)	1332
Hin1II	CATG	8 cut(s)	1129, 1444, 1476, 1589, 1703, 2038, 2114, 2362
Hin6I	GCGC	1 cut(s)	1330
HinP1I	GCGC	1 cut(s)	1330
HincII	GTYRAC	2 cut(s)	673, 2013
HindII	GTYRAC	2 cut(s)	673, 2013
HindIII	AAGCTT	1 cut(s)	470
HpaI	GTTAAC	2 cut(s)	673, 2013
HpaII	CCGG	7 cut(s)	20, 420, 560, 613, 806, 1240, 2279
HphI	GGTGA	9 cut(s)	145, 341, 409, 1408, 2129, 2161, 2232, 2304, 2456
Hpy166II	GTNNAC	9 cut(s)	224, 301, 673, 724, 878, 1508, 1832, 1893, 2013
Hpy188I	TCNGA	8 cut(s)	67, 604, 711, 1052, 1798, 2247, 2263, 2367
Hpy188III	TCNNGA	7 cut(s)	262, 308, 578, 823, 867, 1347, 2279
Hpy8I	GTNNAC	9 cut(s)	224, 301, 673, 724, 878, 1508, 1832, 1893, 2013
Hpy99I	CGWCG	1 cut(s)	2005
HpyCH4III	ACNGT	5 cut(s)	305, 526, 1579, 2017, 2251
HpyCH4IV	ACGT	5 cut(s)	57, 403, 434, 747, 2465
HpyF10VI	GCNNNNNNNGC	5 cut(s)	127, 240, 618, 935, 1031
HpyF3I	CTNAG	6 cut(s)	195, 230, 251, 2244, 2364, 2508
HpySE526I	ACGT	5 cut(s)	57, 403, 434, 747, 2465
Hsp92II	CATG	8 cut(s)	1129, 1444, 1476, 1589, 1703, 2038, 2114, 2362
HspAI	GCGC	1 cut(s)	1330
Kpn2I	TCCGGA	1 cut(s)	2278
Ksp22I	TGATCA	1 cut(s)	1452
KspAI	GTTAAC	2 cut(s)	673, 2013
LmnI	GCTCC	4 cut(s)	597, 1138, 1546, 1849
Lsp1109I	GCAGC	2 cut(s)	1178, 1481
LweI	GCATC	5 cut(s)	1153, 1431, 1456, 2068, 2318
MaeI	CTAG	1 cut(s)	1287
MaeII	ACGT	5 cut(s)	57, 403, 434, 747, 2465
MaeIII	GTNAC	9 cut(s)	22, 151, 529, 743, 748, 1012, 1276, 1297, 2238
MfeI	CAATTG	1 cut(s)	44
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	3 cut(s)	648, 1407, 1846
MlsI	TGGCCA	3 cut(s)	137, 1991, 2033
MluNI	TGGCCA	3 cut(s)	137, 1991, 2033
MlyI	GAGTC	4 cut(s)	339, 1802, 1991, 2246
MmeI	TCCRAC	2 cut(s)	258, 1776
Mox20I	TGGCCA	3 cut(s)	137, 1991, 2033
Mph1103I	ATGCAT	3 cut(s)	13, 1386, 1701
MroI	TCCGGA	1 cut(s)	2278
MroXI	GAANNNNTTC	3 cut(s)	874, 996, 2096
MscI	TGGCCA	3 cut(s)	137, 1991, 2033
MslI	CAYNNNNRTG	4 cut(s)	365, 1103, 1241, 2115
Msp20I	TGGCCA	3 cut(s)	137, 1991, 2033
MspA1I	CMGCKG	2 cut(s)	453, 938
MspCI	CTTAAG	1 cut(s)	649
MspI	CCGG	7 cut(s)	20, 420, 560, 613, 806, 1240, 2279
MspR9I	CCNGG	4 cut(s)	806, 1240, 1993, 2424
MunI	CAATTG	1 cut(s)	44
MvaI	CCWGG	2 cut(s)	1993, 2424
MwoI	GCNNNNNNNGC	5 cut(s)	127, 240, 618, 935, 1031
NciI	CCSGG	2 cut(s)	806, 1240
NcoI	CCATGG	2 cut(s)	1125, 2034
NdeI	CATATG	2 cut(s)	1021, 1709
NheI	GCTAGC	1 cut(s)	1286
NlaIII	CATG	8 cut(s)	1129, 1444, 1476, 1589, 1703, 2038, 2114, 2362
NlaIV	GGNNCC	5 cut(s)	441, 1152, 1216, 1542, 1783
NmuCI	GTSAC	6 cut(s)	151, 529, 1012, 1276, 1297, 2238
NsiI	ATGCAT	3 cut(s)	13, 1386, 1701
NspI	RCATGY	2 cut(s)	1444, 1476
NspV	TTCGAA	1 cut(s)	990
PaeR7I	CTCGAG	1 cut(s)	578
PaqCI	CACCTGC	1 cut(s)	1427
PceI	AGGCCT	1 cut(s)	817
PcsI	WCGNNNNNNNCGW	1 cut(s)	1362
PdmI	GAANNNNTTC	3 cut(s)	874, 996, 2096
PfeI	GAWTC	6 cut(s)	1253, 1262, 1612, 2324, 2355, 2374
PflMI	CCANNNNNTGG	1 cut(s)	2029
PinAI	ACCGGT	1 cut(s)	419
PkrI	GCNGC	2 cut(s)	1193, 1471
PleI	GAGTC	4 cut(s)	339, 1801, 1991, 2245
PpsI	GAGTC	4 cut(s)	339, 1801, 1991, 2245
PpuMI	RGGWCCY	1 cut(s)	482
PshBI	ATTAAT	2 cut(s)	1497, 1526
Psp124BI	GAGCTC	3 cut(s)	648, 1407, 1846
Psp1406I	AACGTT	1 cut(s)	2465
Psp5II	RGGWCCY	1 cut(s)	482
Psp6I	CCWGG	2 cut(s)	1991, 2422
PspFI	CCCAGC	1 cut(s)	934
PspGI	CCWGG	2 cut(s)	1991, 2422
PspN4I	GGNNCC	5 cut(s)	441, 1152, 1216, 1542, 1783
PspPI	GGNCC	9 cut(s)	439, 482, 908, 1782, 1890, 2159, 2332, 2412, 2482
PspPPI	RGGWCCY	1 cut(s)	482
PsrI	GAACNNNNNNTAC	4 cut(s)	306, 338, 1060, 1092
PstI	CTGCAG	2 cut(s)	1196, 1450
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	88
PvuII	CAGCTG	1 cut(s)	938
RsaI	GTAC	6 cut(s)	60, 424, 723, 1229, 1509, 1833
RsaNI	GTAC	6 cut(s)	59, 423, 722, 1228, 1508, 1832
RseI	CAYNNNNRTG	4 cut(s)	365, 1103, 1241, 2115
SacI	GAGCTC	3 cut(s)	648, 1407, 1846
SatI	GCNGC	2 cut(s)	1192, 1470
Sau96I	GGNCC	9 cut(s)	439, 482, 908, 1782, 1890, 2159, 2332, 2412, 2482
SchI	GAGTC	4 cut(s)	339, 1802, 1991, 2246
ScrFI	CCNGG	4 cut(s)	806, 1240, 1993, 2424
SduI	GDGCHC	3 cut(s)	648, 1407, 1846
SfaNI	GCATC	5 cut(s)	1153, 1431, 1456, 2068, 2318
SfcI	CTRYAG	4 cut(s)	297, 1192, 1446, 1932
Sfr274I	CTCGAG	1 cut(s)	578
SfuI	TTCGAA	1 cut(s)	990
SinI	GGWCC	6 cut(s)	439, 482, 1782, 1890, 2159, 2332
SlaI	CTCGAG	1 cut(s)	578
SmiMI	CAYNNNNRTG	4 cut(s)	365, 1103, 1241, 2115
SmlI	CTYRAG	2 cut(s)	578, 649
SmoI	CTYRAG	2 cut(s)	578, 649
SseBI	AGGCCT	1 cut(s)	817
SsiI	CCGC	4 cut(s)	218, 453, 477, 2162
SspI	AATATT	3 cut(s)	768, 1116, 1693
SspMI	CTAG	1 cut(s)	1287
SstI	GAGCTC	3 cut(s)	648, 1407, 1846
StuI	AGGCCT	1 cut(s)	817
StyD4I	CCNGG	4 cut(s)	804, 1238, 1991, 2422
StyI	CCWWGG	5 cut(s)	1125, 1210, 2034, 2328, 2485
TaaI	ACNGT	5 cut(s)	305, 526, 1579, 2017, 2251
TaiI	ACGT	5 cut(s)	60, 406, 437, 750, 2468
TaqI	TCGA	9 cut(s)	579, 990, 1046, 1521, 1762, 1772, 1836, 2000, 2322
TaqII	GACCGA	1 cut(s)	1878
TatI	WGTACW	3 cut(s)	721, 1507, 1831
TfiI	GAWTC	6 cut(s)	1253, 1262, 1612, 2324, 2355, 2374
TscAI	CASTG	3 cut(s)	41, 1455, 1834
TseFI	GTSAC	6 cut(s)	151, 529, 1012, 1276, 1297, 2238
TseI	GCWGC	2 cut(s)	1191, 1469
Tsp45I	GTSAC	6 cut(s)	151, 529, 1012, 1276, 1297, 2238
TspDTI	ATGAA	9 cut(s)	136, 176, 675, 714, 890, 1716, 1748, 2058, 2347
TspGWI	ACGGA	4 cut(s)	281, 1125, 1843, 2336
TspRI	CASTG	3 cut(s)	41, 1455, 1834
Van91I	CCANNNNNTGG	1 cut(s)	2029
Vha464I	CTTAAG	1 cut(s)	649
VpaK11BI	GGWCC	6 cut(s)	439, 482, 1782, 1890, 2159, 2332
VspI	ATTAAT	2 cut(s)	1497, 1526
XagI	CCTNNNNNAGG	1 cut(s)	578
XapI	RAATTY	3 cut(s)	971, 1410, 2273
XceI	RCATGY	2 cut(s)	1444, 1476
XcmI	CCANNNNNNNNNTGG	2 cut(s)	783, 850
XhoI	CTCGAG	1 cut(s)	578
XmiI	GTMKAC	2 cut(s)	223, 300
XmnI	GAANNNNTTC	3 cut(s)	874, 996, 2096
XspI	CTAG	1 cut(s)	1287
Zsp2I	ATGCAT	3 cut(s)	13, 1386, 1701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.