Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001192

Physical Location & Seq

Genomic Coordinates Reverse (-)

16152720 .. 16155354

Gene Structure 2635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g23050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2397 bp

ATGAGTTTTACACCGTCAAGGGCCCAGTTCAAGAAGAACAGGACATGTGTGGAGTTACCACCCAACATTCATTCAAGTGGTATTTGGCCGGGAAAGCCTAGAGAAACAACTATTGCTAATGAGTTTGATACCACGGGTGCTACATTACCAATGCTCGAAATGAAAATGGTCATGACCTTCTTAGTCACCCAGCTCTTCCAACTCATTCTTGGTTCATTTGGCCTCCCATTATTTGTCTCTCAAATGCTAGCAGGATTCTTGCTTGGTCCAGCGGTGATCGGCAGAATTCAATTTTTCGAAAACTGGTACAATGACTGGATAATGTCCTTGGCAAGTCAGGACGTACTTGGCACTCTCACAATGTTTGGCTACTCGATGTTCTTGTTTCTGGCAGCAGTGAAGATGGATGCAAGTCTATTATTGAAGACTGGGAGAAAAGCATTTTACACTGGCATTTTCTCCTTGATGGTGCCCCTAATTGTTGGCTTTTCCACAGTGAATTTGTTGGACTATCAGAAGGGAAAAAACAATTTGAAAGAGGAAAACGGAGTGCCATATGGAATCAAATTCCTGATATTATCAATATCTCGGACATCATTTTCTGTGATAGTTTCCCTCCTTGGCCAACTCCTCATCCTTACTTCCGAACTCGGACGATTAGGATTGTCAGCAGCTCTAGTCTGCGACATGCTAACCTTGACTCTCATAACAATTGCGAGAGCGTTACCAACCAGCAAGAAAGGTGTGGAAAAGTTTCCCTACAAGCAAGACAATTTAAGTTTCCCTCTTATTAACTTAGGATATTGTCTTGCTTGTGTGCTCGTGGTCCGACCGGCTATGAATTGGCTCATCAGACAGACACCTAAAGGCAAGCCTGTAAACAATGGCTACATCTTTGGCGTCGTCTTGCTGGCCTTGGTTTCCGGAGCTCCCAAACAGCTTGTTATATACGGACCTTTCTTTCTCGGCTTAGTTGTACCAAGTGGACCTCCTCTCGGGTCGACCCTGGTTCAGAAATACGACTTCATGGTCTCCCGCGTGTTCATGCCACTCTTTGTCACCAATTGTGTGCTTATGTCAGATCTTAGAGAACTTCGCTTCGATGCTAATTTACTGGTTTTGTTGGTAATAACTATGTTGGCCAAATTCTTGGGTTCTTTGGCACCAGCAATCTGCTGTAGAATTCCCATCAAGGATGCTTTCGCCCTCGCTTTCATAATGAGTTGCAAAGGTGCCGTCGAAATCGGTGGTTATTTCATGATCTATGATGGCCAGAATATCACCGACGGGGTTTATGCCTTGGCGATGTTGATGATCCTCTTTGCCCACCTCATCGTGGCATATGCCGTGAAGCACCTGTACAAGAAATCGACTAGGTACGCAGGGTATGAGCAGAGAAATGTACTAGGCATTAGACCTAACTCGGAGCTCAAGATTCTTTCATGCATCCACAAACAAGACAACGTGCCAGCTGTCATCAACTTATTGGATGTGGCTTGCCCTACCGGAGAAAACCCTATTGATCTCAACGTCCTCCACCTGATAGAGATGACCGGCCAAGACGCCCCCATGCTCATTTCCCACCGCATGCAAAAGAAGACGACAATGTCCAGCAGCTTCGACTCCGAGGACGTCCTCGTTTCTTTGCTCAAATTCGAGGGGGAGTACGGTGCCGCCGTTGAGGTCCACCCCTTCACGGCGGTCTGGCCGTCAAAATGGATGTACGAACAGATATGTACCCTTGCCCTAGACAGGCTCACACATCTCATCATACTCCCCTTCCACCGCCTTTGGACGGTGGACGGCGCTGTTAAATCGGAGGACGAAACCGTCAGAAACATAAACATTAGTGTTCTAGACGAATCGCCTTGTTCGGTGGGAGTTCTAGTCAACCGAGGCCCGCTCCGGCAAAACCACAAACGAGAAGATTGGCAAGCACAGTTCAATGTTGCGTTGATTTTCTTAGGTGGTGAAGATGATAGAGAAACATTGGCTTTGACGGGAAGGATGACCGGCGACCCGAGCATCATCCTAACCGTGTTTCATATCAAGCCCCCCACAGAGCCTGAAATTGGGCCAGGGCTTGACTGGGACAGTGTTCTGGACTTTGAGAGTTTGAGGAAGTTCAGGCTAAACAACACCGGCAACGGCCGTTACGTGATTTACAGGGAAGCGGTTTCTGAAAGTGGGGAACAAACCTTGGACATGTTGAGGGAGATTGTGCACAAGTATGACCTTTTCGTGGTCGGGAGGAGGAAAAAGGTTAAGGATAGTACTCCTCAGACTTCAGGGCTTGATGATTGGAGTGAGTACTCAGAGCTTGGGATTATAGGCGACTTGCTCGCATCAGATGATTTGGGTTGCAGATCTTCTATCTTAGTGGTGCAGAGCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

799

Amino Acids

88.72

Weight (kDa)

7.15

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	62 - 451	1.2e-23	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	511 - 633	1.3e-07	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	649 - 797	1e-06	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44900 AT5G22900
fragaria_vesca	FvH4_3g06341 FvH4_3g23050 FvH4_3g39831 FvH4_6g14510 FvH4_7g14610
malus_domestica	MD02G1295300.v1.1 MD03G1057300.v1.1 MD05G1291400.v1.1 MD10G1267300.v1.1 MD11G1059200.v1.1 MD14G1082300.v1.1
prunus_persica	Prupe.1G346300_v2.0.a1 Prupe.2G029000_v2.0.a1 Prupe.4G074200_v2.0.a1 Prupe.6G047400_v2.0.a1 Prupe.6G047500_v2.0.a1 Prupe.6G047600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0356111 RchiOBHm_Chr1g0356121 RchiOBHm_Chr4g0446581 RchiOBHm_Chr5g0071781
rosa_laevigata	RLG00000005649 RLG00000028106 RLG00000036246 RLG00000036247 RLG00000036248
rosa_multiflora	Rmu_sc0001113.1_g000009 Rmu_sc0002569.1_g000023 Rmu_sc0003229.1_g000013 Rmu_sc0036166.1_g000001 Rmu_ssc0000144.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009380 Rroxscaffold_1G00009410 Rroxscaffold_4G00299800 Rroxscaffold_5G00386970
rosa_rugosa	Rorug04G0372400 Rorug05G0414600 Rorug05G0414700
rosa_samantha	Rh1AG262500 Rh1BG231000 Rh1CG245800 Rh4AG434100 Rh4BG443300 Rh4CG460600 Rh4DG442100 Rh5AG470700 Rh5BG490400 Rh5CG514400 Rh5DG501400 Rh5DG501600 Rh5DG501700
rosa_wichuraiana	Rw1G023190 Rw4G037110 Rw5G043740 Rw5G043750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	1028, 1606, 1829
AatII	GACGTC	1 cut(s)	1635
AccB1I	GGYRCC	4 cut(s)	469, 1162, 1232, 1670
AccBSI	CCGCTC	1 cut(s)	1903
AccI	GTMKAC	1 cut(s)	1001
AccII	CGCG	1 cut(s)	1038
AccIII	TCCGGA	1 cut(s)	923
AciI	CCGC	8 cut(s)	272, 1036, 1585, 1674, 1700, 1786, 1901, 2174
AclWI	GGATC	1 cut(s)	1309
AcoI	YGGCCR	7 cut(s)	86, 622, 1140, 1270, 1555, 1706, 2149
AcsI	RAATTY	6 cut(s)	285, 499, 566, 1145, 1182, 1652
AcuI	CTGAAG	1 cut(s)	2271
AcyI	GRCGYC	3 cut(s)	900, 1563, 1632
AfiI	CCNNNNNNNGG	7 cut(s)	995, 1336, 1696, 1752, 1795, 2072, 2242
AflIII	ACRYGT	2 cut(s)	44, 2205
AgsI	TTSAA	6 cut(s)	31, 75, 290, 424, 535, 1945
AjnI	CCWGG	2 cut(s)	1005, 2077
AluBI	AGCT	8 cut(s)	193, 674, 929, 940, 1429, 1472, 1617, 2320
AluI	AGCT	8 cut(s)	193, 674, 929, 940, 1429, 1472, 1617, 2320
Alw21I	GWGCWC	4 cut(s)	822, 931, 1431, 2226
Alw26I	GTCTC	2 cut(s)	241, 1036
Alw44I	GTGCAC	1 cut(s)	2222
AlwI	GGATC	1 cut(s)	1309
AlwNI	CAGNNNCTG	1 cut(s)	2066
Ama87I	CYCGRG	2 cut(s)	995, 2020
Aor13HI	TCCGGA	1 cut(s)	923
ApaI	GGGCCC	1 cut(s)	25
ApaLI	GTGCAC	1 cut(s)	2222
ApeKI	GCWGC	3 cut(s)	392, 671, 1614
ApoI	RAATTY	6 cut(s)	285, 499, 566, 1145, 1182, 1652
ArsI	GACNNNNNNTTYG	2 cut(s)	1221, 1253
Asp700I	GAANNNNTTC	1 cut(s)	753
AspLEI	GCGC	1 cut(s)	1808
AspS9I	GGNCC	9 cut(s)	21, 22, 266, 826, 953, 986, 1684, 1898, 2075
AsuC2I	CCSGG	1 cut(s)	90
AsuHPI	GGTGA	5 cut(s)	178, 286, 1051, 1273, 1982
AsuII	TTCGAA	1 cut(s)	297
AsuNHI	GCTAGC	1 cut(s)	247
AvaI	CYCGRG	2 cut(s)	995, 2020
AvaII	GGWCC	5 cut(s)	266, 826, 953, 986, 1684
BaeGI	GKGCMC	3 cut(s)	25, 474, 2226
BalI	TGGCCA	3 cut(s)	624, 1142, 1272
BanI	GGYRCC	4 cut(s)	469, 1162, 1232, 1670
BanII	GRGCYC	3 cut(s)	25, 931, 1431
BarI	GAAGNNNNNNTAC	2 cut(s)	1343, 1375
BauI	CACGAG	1 cut(s)	821
BbsI	GAAGAC	2 cut(s)	431, 1604
Bbv12I	GWGCWC	4 cut(s)	822, 931, 1431, 2226
BbvI	GCAGC	3 cut(s)	404, 683, 1626
BccI	CCATC	4 cut(s)	397, 460, 1196, 1262
BceAI	ACGGC	8 cut(s)	1220, 1331, 1661, 1693, 1713, 1819, 2136, 2164
BciT130I	CCWGG	2 cut(s)	1007, 2079
BcnI	CCSGG	1 cut(s)	90
BcoDI	GTCTC	2 cut(s)	241, 1036
BfaI	CTAG	8 cut(s)	99, 248, 677, 1374, 1406, 1748, 1856, 1886
BfmI	CTRYAG	1 cut(s)	1177
BfoI	RGCGCY	1 cut(s)	1809
BglII	AGATCT	2 cut(s)	1081, 2366
BisI	GCNGC	4 cut(s)	393, 672, 1615, 1674
BlsI	GCNGC	4 cut(s)	394, 673, 1616, 1675
BmcAI	AGTACT	2 cut(s)	2275, 2312
Bme1390I	CCNGG	3 cut(s)	90, 1007, 2079
Bme18I	GGWCC	5 cut(s)	266, 826, 953, 986, 1684
BmeT110I	CYCGRG	2 cut(s)	995, 2020
BmgT120I	GGNCC	9 cut(s)	21, 22, 266, 826, 953, 986, 1684, 1898, 2075
BmiI	GGNNCC	5 cut(s)	23, 471, 1164, 1234, 1672
BmrFI	CCNGG	3 cut(s)	90, 1007, 2079
BmrI	ACTGGG	3 cut(s)	19, 438, 2098
BmsI	GCATC	6 cut(s)	397, 1093, 1186, 1455, 2034, 2354
BmtI	GCTAGC	1 cut(s)	251
BmuI	ACTGGG	3 cut(s)	19, 438, 2098
BpiI	GAAGAC	2 cut(s)	431, 1604
BplI	GAGNNNNNCTC	2 cut(s)	1887, 1919
Bpu14I	TTCGAA	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	1415
BpuMI	CCSGG	1 cut(s)	90
BsaAI	YACGTR	1 cut(s)	2158
BsaHI	GRCGYC	3 cut(s)	900, 1563, 1632
BsaI	GGTCTC	1 cut(s)	1036
BsaWI	WCCGGW	2 cut(s)	923, 1505
BsaXI	ACNNNNNCTCC	2 cut(s)	1872, 1902
Bsc4I	CCNNNNNNNGG	7 cut(s)	995, 1336, 1696, 1752, 1795, 2072, 2242
Bse118I	RCCGGY	4 cut(s)	832, 1553, 2012, 2141
Bse1I	ACTGG	7 cut(s)	25, 308, 320, 433, 454, 1119, 2093
BseAI	TCCGGA	1 cut(s)	923
BseBI	CCWGG	2 cut(s)	1007, 2079
BseGI	GGATG	8 cut(s)	412, 633, 1201, 1446, 1495, 1725, 2013, 2028
BseLI	CCNNNNNNNGG	7 cut(s)	995, 1336, 1696, 1752, 1795, 2072, 2242
BseMII	CTCAG	2 cut(s)	2294, 2328
BseNI	ACTGG	7 cut(s)	25, 308, 320, 433, 454, 1119, 2093
BseRI	GAGGAG	4 cut(s)	620, 981, 2266, 2268
BseSI	GKGCMC	3 cut(s)	25, 474, 2226
BseX3I	CGGCCG	1 cut(s)	2149
BseXI	GCAGC	3 cut(s)	404, 683, 1626
BseYI	CCCAGC	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	1038
Bsh1285I	CGRYCG	2 cut(s)	833, 2152
BshNI	GGYRCC	4 cut(s)	469, 1162, 1232, 1670
BsiEI	CGRYCG	2 cut(s)	833, 2152
BsiHKAI	GWGCWC	4 cut(s)	822, 931, 1431, 2226
BsiHKCI	CYCGRG	2 cut(s)	995, 2020
BsiSI	CCGG	8 cut(s)	89, 833, 924, 1506, 1554, 1906, 2013, 2142
BslFI	GGGAC	1 cut(s)	2105
BslI	CCNNNNNNNGG	7 cut(s)	995, 1336, 1696, 1752, 1795, 2072, 2242
BsmAI	GTCTC	2 cut(s)	241, 1036
BsmFI	GGGAC	1 cut(s)	2105
Bso31I	GGTCTC	1 cut(s)	1036
BsoBI	CYCGRG	2 cut(s)	995, 2020
Bsp119I	TTCGAA	1 cut(s)	297
Bsp120I	GGGCCC	1 cut(s)	21
Bsp1286I	GDGCHC	6 cut(s)	25, 474, 822, 931, 1431, 2226
Bsp13I	TCCGGA	1 cut(s)	923
Bsp1407I	TGTACA	1 cut(s)	1359
Bsp143I	GATC	6 cut(s)	276, 1081, 1260, 1314, 1522, 2366
BspACI	CCGC	8 cut(s)	272, 1036, 1585, 1674, 1700, 1786, 1901, 2174
BspCNI	CTCAG	2 cut(s)	2293, 2327
BspEI	TCCGGA	1 cut(s)	923
BspFNI	CGCG	1 cut(s)	1038
BspHI	TCATGA	2 cut(s)	171, 1257
BspLI	GGNNCC	5 cut(s)	23, 471, 1164, 1234, 1672
BspOI	GCTAGC	1 cut(s)	251
BspPI	GGATC	1 cut(s)	1309
BspQI	GCTCTTC	1 cut(s)	200
BspT104I	TTCGAA	1 cut(s)	297
BspT107I	GGYRCC	4 cut(s)	469, 1162, 1232, 1670
BspTNI	GGTCTC	1 cut(s)	1036
BsrBI	CCGCTC	1 cut(s)	1903
BsrFI	RCCGGY	4 cut(s)	832, 1553, 2012, 2141
BsrGI	TGTACA	1 cut(s)	1359
BsrI	ACTGG	7 cut(s)	25, 308, 320, 433, 454, 1119, 2093
BssAI	RCCGGY	4 cut(s)	832, 1553, 2012, 2141
BssMI	GATC	6 cut(s)	276, 1081, 1260, 1314, 1522, 2366
BssNI	GRCGYC	3 cut(s)	900, 1563, 1632
BssSI	CACGAG	1 cut(s)	821
BssT1I	CCWWGG	5 cut(s)	327, 619, 915, 1299, 2199
Bst2BI	CACGAG	1 cut(s)	821
Bst2UI	CCWGG	2 cut(s)	1007, 2079
Bst4CI	ACNGT	8 cut(s)	15, 496, 1670, 1798, 1831, 1941, 2038, 2096
Bst6I	CTCTTC	1 cut(s)	200
BstACI	GRCGYC	3 cut(s)	900, 1563, 1632
BstAUI	TGTACA	1 cut(s)	1359
BstBAI	YACGTR	1 cut(s)	2158
BstBI	TTCGAA	1 cut(s)	297
BstC8I	GCNNGC	9 cut(s)	249, 872, 912, 1470, 1498, 1589, 1901, 1935, 2343
BstDEI	CTNAG	8 cut(s)	181, 796, 970, 1085, 1963, 2280, 2314, 2377
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	8 cut(s)	412, 633, 1201, 1446, 1495, 1725, 2013, 2028
BstFNI	CGCG	1 cut(s)	1038
BstH2I	RGCGCY	1 cut(s)	1809
BstHHI	GCGC	1 cut(s)	1808
BstKTI	GATC	6 cut(s)	279, 1084, 1263, 1317, 1525, 2369
BstMAI	GTCTC	2 cut(s)	241, 1036
BstMBI	GATC	6 cut(s)	276, 1081, 1260, 1314, 1522, 2366
BstMCI	CGRYCG	2 cut(s)	833, 2152
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 2022
BstNI	CCWGG	2 cut(s)	1007, 2079
BstNSI	RCATGY	4 cut(s)	48, 691, 1591, 2209
BstSCI	CCNGG	3 cut(s)	88, 1005, 2077
BstSFI	CTRYAG	1 cut(s)	1177
BstSLI	GKGCMC	3 cut(s)	25, 474, 2226
BstUI	CGCG	1 cut(s)	1038
BstV1I	GCAGC	3 cut(s)	404, 683, 1626
BstV2I	GAAGAC	2 cut(s)	431, 1604
BstX2I	RGATCY	2 cut(s)	1081, 2366
BstXI	CCANNNNNNTGG	1 cut(s)	1150
BstYI	RGATCY	2 cut(s)	1081, 2366
BstZI	CGGCCG	1 cut(s)	2149
BtgI	CCRYGG	1 cut(s)	132
BtgZI	GCGATG	1 cut(s)	1319
BtsCI	GGATG	8 cut(s)	412, 633, 1201, 1446, 1495, 1725, 2013, 2028
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	4 cut(s)	402, 447, 501, 2101
Cac8I	GCNNGC	9 cut(s)	249, 872, 912, 1470, 1498, 1589, 1901, 1935, 2343
CaiI	CAGNNNCTG	1 cut(s)	2066
CciI	TCATGA	2 cut(s)	171, 1257
CfoI	GCGC	1 cut(s)	1808
Cfr10I	RCCGGY	4 cut(s)	832, 1553, 2012, 2141
Cfr13I	GGNCC	9 cut(s)	21, 22, 266, 826, 953, 986, 1684, 1898, 2075
CseI	GACGC	2 cut(s)	889, 1571
CspCI	CAANNNNNGTGG	2 cut(s)	1772, 1807
DdeI	CTNAG	8 cut(s)	181, 796, 970, 1085, 1963, 2280, 2314, 2377
DpnI	GATC	6 cut(s)	278, 1083, 1262, 1316, 1524, 2368
DpnII	GATC	6 cut(s)	276, 1081, 1260, 1314, 1522, 2366
DrdI	GACNNNNNNGTC	3 cut(s)	1028, 1606, 1829
DseDI	GACNNNNNNGTC	3 cut(s)	1028, 1606, 1829
EaeI	YGGCCR	7 cut(s)	86, 622, 1140, 1270, 1555, 1706, 2149
EagI	CGGCCG	1 cut(s)	2149
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Ecl136II	GAGCTC	2 cut(s)	929, 1429
EclXI	CGGCCG	1 cut(s)	2149
Eco130I	CCWWGG	5 cut(s)	327, 619, 915, 1299, 2199
Eco24I	GRGCYC	3 cut(s)	25, 931, 1431
Eco31I	GGTCTC	1 cut(s)	1036
Eco47I	GGWCC	5 cut(s)	266, 826, 953, 986, 1684
Eco52I	CGGCCG	1 cut(s)	2149
Eco53kI	GAGCTC	2 cut(s)	929, 1429
Eco57I	CTGAAG	1 cut(s)	2271
Eco88I	CYCGRG	2 cut(s)	995, 2020
EcoICRI	GAGCTC	2 cut(s)	929, 1429
EcoO109I	RGGNCCY	1 cut(s)	21
EcoRI	GAATTC	2 cut(s)	285, 1182
EcoRII	CCWGG	2 cut(s)	1005, 2077
EcoT14I	CCWWGG	5 cut(s)	327, 619, 915, 1299, 2199
EcoT22I	ATGCAT	1 cut(s)	1448
EcoT38I	GRGCYC	3 cut(s)	25, 931, 1431
ErhI	CCWWGG	5 cut(s)	327, 619, 915, 1299, 2199
FaqI	GGGAC	1 cut(s)	2105
FauI	CCCGC	2 cut(s)	1043, 1908
FauNDI	CATATG	2 cut(s)	556, 1342
FblI	GTMKAC	1 cut(s)	1001
Fnu4HI	GCNGC	4 cut(s)	393, 672, 1615, 1674
FokI	GGATG	8 cut(s)	419, 620, 1208, 1433, 1502, 1732, 2015, 2020
FriOI	GRGCYC	3 cut(s)	25, 931, 1431
Fsp4HI	GCNGC	4 cut(s)	393, 672, 1615, 1674
FspBI	CTAG	8 cut(s)	99, 248, 677, 1374, 1406, 1748, 1856, 1886
GlaI	GCGC	1 cut(s)	1807
GluI	GCNGC	4 cut(s)	393, 672, 1615, 1674
GsaI	CCCAGC	1 cut(s)	193
HaeII	RGCGCY	1 cut(s)	1809
HapII	CCGG	8 cut(s)	89, 833, 924, 1506, 1554, 1906, 2013, 2142
HgaI	GACGC	2 cut(s)	889, 1571
HhaI	GCGC	1 cut(s)	1808
Hin1I	GRCGYC	3 cut(s)	900, 1563, 1632
Hin6I	GCGC	1 cut(s)	1806
HinP1I	GCGC	1 cut(s)	1806
HincII	GTYRAC	2 cut(s)	1002, 1891
HindII	GTYRAC	2 cut(s)	1002, 1891
HinfI	GANTC	6 cut(s)	255, 561, 700, 1435, 1622, 1862
HpaII	CCGG	8 cut(s)	89, 833, 924, 1506, 1554, 1906, 2013, 2142
HphI	GGTGA	5 cut(s)	178, 286, 1051, 1273, 1982
Hpy166II	GTNNAC	7 cut(s)	880, 986, 1002, 1687, 1801, 1891, 2224
Hpy8I	GTNNAC	7 cut(s)	880, 986, 1002, 1687, 1801, 1891, 2224
Hpy99I	CGWCG	3 cut(s)	905, 1241, 1289
HpyAV	CCTTC	5 cut(s)	187, 511, 1702, 1789, 1998
HpyCH4III	ACNGT	8 cut(s)	15, 496, 1670, 1798, 1831, 1941, 2038, 2096
HpyCH4IV	ACGT	5 cut(s)	342, 1464, 1530, 1632, 2157
HpyCH4V	TGCA	7 cut(s)	410, 1227, 1446, 1591, 2224, 2364, 2386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 2022
HpyF3I	CTNAG	8 cut(s)	181, 796, 970, 1085, 1963, 2280, 2314, 2377
HpySE526I	ACGT	5 cut(s)	342, 1464, 1530, 1632, 2157
Hsp92I	GRCGYC	3 cut(s)	900, 1563, 1632
HspAI	GCGC	1 cut(s)	1806
Kpn2I	TCCGGA	1 cut(s)	923
Kzo9I	GATC	6 cut(s)	276, 1081, 1260, 1314, 1522, 2366
LguI	GCTCTTC	1 cut(s)	200
LmnI	GCTCC	4 cut(s)	926, 934, 1426, 1908
Lsp1109I	GCAGC	3 cut(s)	404, 683, 1626
LweI	GCATC	6 cut(s)	397, 1093, 1186, 1455, 2034, 2354
MaeI	CTAG	8 cut(s)	99, 248, 677, 1374, 1406, 1748, 1856, 1886
MaeII	ACGT	5 cut(s)	342, 1464, 1530, 1632, 2157
MaeIII	GTNAC	5 cut(s)	54, 184, 723, 1057, 2153
MalI	GATC	6 cut(s)	278, 1083, 1262, 1316, 1524, 2368
MbiI	CCGCTC	1 cut(s)	1903
MboI	GATC	6 cut(s)	276, 1081, 1260, 1314, 1522, 2366
MboII	GAAGA	8 cut(s)	46, 187, 412, 436, 1609, 1937, 1985, 2361
MfeI	CAATTG	2 cut(s)	711, 1063
MflI	RGATCY	2 cut(s)	1081, 2366
MhlI	GDGCHC	6 cut(s)	25, 474, 822, 931, 1431, 2226
MlsI	TGGCCA	3 cut(s)	624, 1142, 1272
MluNI	TGGCCA	3 cut(s)	624, 1142, 1272
MlyI	GAGTC	2 cut(s)	694, 1616
MmeI	TCCRAC	3 cut(s)	223, 486, 853
Mox20I	TGGCCA	3 cut(s)	624, 1142, 1272
Mph1103I	ATGCAT	1 cut(s)	1448
MroI	TCCGGA	1 cut(s)	923
MroXI	GAANNNNTTC	1 cut(s)	753
MscI	TGGCCA	3 cut(s)	624, 1142, 1272
MseI	TTAA	4 cut(s)	776, 792, 1812, 2265
MslI	CAYNNNNRTG	2 cut(s)	75, 2229
Msp20I	TGGCCA	3 cut(s)	624, 1142, 1272
MspA1I	CMGCKG	2 cut(s)	272, 1472
MspI	CCGG	8 cut(s)	89, 833, 924, 1506, 1554, 1906, 2013, 2142
MspR9I	CCNGG	3 cut(s)	90, 1007, 2079
MunI	CAATTG	2 cut(s)	711, 1063
MvaI	CCWGG	2 cut(s)	1007, 2079
MvnI	CGCG	1 cut(s)	1038
MwoI	GCNNNNNNNGC	2 cut(s)	94, 2022
NciI	CCSGG	1 cut(s)	90
NdeI	CATATG	2 cut(s)	556, 1342
NdeII	GATC	6 cut(s)	276, 1081, 1260, 1314, 1522, 2366
NheI	GCTAGC	1 cut(s)	247
NlaIV	GGNNCC	5 cut(s)	23, 471, 1164, 1234, 1672
NmeAIII	GCCGAG	1 cut(s)	945
NmuCI	GTSAC	2 cut(s)	184, 1057
NsiI	ATGCAT	1 cut(s)	1448
NspI	RCATGY	4 cut(s)	48, 691, 1591, 2209
NspV	TTCGAA	1 cut(s)	297
PaeI	GCATGC	1 cut(s)	1591
PagI	TCATGA	2 cut(s)	171, 1257
PciI	ACATGT	2 cut(s)	44, 2205
PciSI	GCTCTTC	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	2 cut(s)	1674, 2154
PdmI	GAANNNNTTC	1 cut(s)	753
PfeI	GAWTC	4 cut(s)	255, 561, 1435, 1862
PflFI	GACNNNGTC	1 cut(s)	1606
PkrI	GCNGC	4 cut(s)	394, 673, 1616, 1675
PleI	GAGTC	2 cut(s)	694, 1616
PpsI	GAGTC	2 cut(s)	694, 1616
Ppu21I	YACGTR	1 cut(s)	2158
PscI	ACATGT	2 cut(s)	44, 2205
Psp124BI	GAGCTC	2 cut(s)	931, 1431
Psp6I	CCWGG	2 cut(s)	1005, 2077
PspFI	CCCAGC	1 cut(s)	189
PspGI	CCWGG	2 cut(s)	1005, 2077
PspN4I	GGNNCC	5 cut(s)	23, 471, 1164, 1234, 1672
PspOMI	GGGCCC	1 cut(s)	21
PspPI	GGNCC	9 cut(s)	21, 22, 266, 826, 953, 986, 1684, 1898, 2075
PstNI	CAGNNNCTG	1 cut(s)	2066
PsuI	RGATCY	2 cut(s)	1081, 2366
PsyI	GACNNNGTC	1 cut(s)	1606
PvuII	CAGCTG	1 cut(s)	1472
RseI	CAYNNNNRTG	2 cut(s)	75, 2229
SacI	GAGCTC	2 cut(s)	931, 1431
SalI	GTCGAC	1 cut(s)	1000
SapI	GCTCTTC	1 cut(s)	200
SaqAI	TTAA	4 cut(s)	776, 792, 1812, 2265
SatI	GCNGC	4 cut(s)	393, 672, 1615, 1674
Sau3AI	GATC	6 cut(s)	276, 1081, 1260, 1314, 1522, 2366
Sau96I	GGNCC	9 cut(s)	21, 22, 266, 826, 953, 986, 1684, 1898, 2075
ScaI	AGTACT	2 cut(s)	2275, 2312
SchI	GAGTC	2 cut(s)	694, 1616
ScrFI	CCNGG	3 cut(s)	90, 1007, 2079
SduI	GDGCHC	6 cut(s)	25, 474, 822, 931, 1431, 2226
SfaNI	GCATC	6 cut(s)	397, 1093, 1186, 1455, 2034, 2354
SfcI	CTRYAG	1 cut(s)	1177
SfuI	TTCGAA	1 cut(s)	297
SinI	GGWCC	5 cut(s)	266, 826, 953, 986, 1684
SmiMI	CAYNNNNRTG	2 cut(s)	75, 2229
SmlI	CTYRAG	1 cut(s)	1430
SmoI	CTYRAG	1 cut(s)	1430
SphI	GCATGC	1 cut(s)	1591
SsiI	CCGC	8 cut(s)	272, 1036, 1585, 1674, 1700, 1786, 1901, 2174
SspMI	CTAG	8 cut(s)	99, 248, 677, 1374, 1406, 1748, 1856, 1886
SstI	GAGCTC	2 cut(s)	931, 1431
StyD4I	CCNGG	3 cut(s)	88, 1005, 2077
StyI	CCWWGG	5 cut(s)	327, 619, 915, 1299, 2199
TaaI	ACNGT	8 cut(s)	15, 496, 1670, 1798, 1831, 1941, 2038, 2096
TaiI	ACGT	5 cut(s)	345, 1467, 1533, 1635, 2160
TaqI	TCGA	9 cut(s)	156, 297, 374, 1001, 1101, 1239, 1370, 1620, 1656
TatI	WGTACW	4 cut(s)	1359, 1402, 2273, 2310
TauI	GCSGC	1 cut(s)	1676
TfiI	GAWTC	4 cut(s)	255, 561, 1435, 1862
Tru1I	TTAA	4 cut(s)	776, 792, 1812, 2265
Tru9I	TTAA	4 cut(s)	776, 792, 1812, 2265
TscAI	CASTG	4 cut(s)	402, 454, 501, 2101
TseFI	GTSAC	2 cut(s)	184, 1057
TseI	GCWGC	3 cut(s)	392, 671, 1614
Tsp45I	GTSAC	2 cut(s)	184, 1057
TspGWI	ACGGA	2 cut(s)	561, 966
TspRI	CASTG	4 cut(s)	402, 454, 501, 2101
Tth111I	GACNNNGTC	1 cut(s)	1606
VneI	GTGCAC	1 cut(s)	2222
VpaK11BI	GGWCC	5 cut(s)	266, 826, 953, 986, 1684
XapI	RAATTY	6 cut(s)	285, 499, 566, 1145, 1182, 1652
XbaI	TCTAGA	1 cut(s)	1855
XceI	RCATGY	4 cut(s)	48, 691, 1591, 2209
XcmI	CCANNNNNNNNNTGG	2 cut(s)	206, 2085
XmiI	GTMKAC	1 cut(s)	1001
XmnI	GAANNNNTTC	1 cut(s)	753
XspI	CTAG	8 cut(s)	99, 248, 677, 1374, 1406, 1748, 1856, 1886
ZraI	GACGTC	1 cut(s)	1633
ZrmI	AGTACT	2 cut(s)	2275, 2312
Zsp2I	ATGCAT	1 cut(s)	1448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.