Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001192

Physical Location & Seq

Genomic Coordinates Forward (+)

19744210 .. 19749796

Gene Structure 5587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00299800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2244 bp

ATGTTGTGCTCGGAAAAATGCTTTGATTCTCTCTCCTCCGACCAAATTGCTGCAAGCTACCGCCGCAGACTTATAGAGGAGGAGGAGGAGGAGGAGGTCTCAACTGGACCTATGACGGGTATAGTCTTAGGCCCTTCACTCATAGGAGCCTATAATGTATTCGAGAAGGACATCTTTCCTCGTGACAATCAAGCTATAATTGTTGTGCTGGGTGAAATTGGTTATGAACTCTTTCTGTTTCTAGTTGGAGTAAGAATGGACCTGGAATTGATAAGAAGAACAGGGCGCAAAGTTATGATCACCGGTATTTTATGCGTGTTAGTCCCTTTTGTAACCAGTATGGTCGTCCAAAACCATCTCATGATCCCTGTGTTTAAGCTGACCAAAGATCAAATCTCTAAGCTTCCTTATCTAACGACATCATATTGCATGACTTCGTCTCCTGTCATTGTTCTCCTTCTTGAAGACCTGAATCTCCTAAATTCTGAAATCGGCCGACTAGCTGTGTCCGCATCATCAATCAGTGAATTATTCGGTACTATCTGTATCTGGTTTTTCTCCGTGTTGTACAGAATGGGAAAAGTGAAACCTGTGGCTGAAACTTTATTAGTTTTCGGAGCAGTTATTGGCAGCATGCTAGCATTTCTGTTCATATTCCGACCAATACTGTTTTGGGTGATTAGGCAGACCCCGCATAACAAGGCTGTTAAGAAAAGCTATGTCAATGCCATAATCGTGCTGATGCTTTTTGTAATAATACTATCACATTATTACGGCCATTCTTTCCATTTCCTGGTTTTCGTATTGGGTCTGTCAGTCCCAGCTGGACAACCTTTGGGATCAACTCTTGAAGAATTGCTCCATGTCTTCATTTCTCAAGTGCTTCTACCCATTTATGTGACTGCATATGCAATGAAGGCAAATTTTCGGTTGGTCGATTTCAATGACCCGGCCACAGTAATCACTGCTATTCTCATCGTTTTCATTTTTCTGCTCAAAATCATAGGCAGCATGGTTGCTCCATTGTATTGTAAAATGCCCTTGAACGATGCATTTGTGCTTGCTCTCATTCTAAGCTCCAGAGGCATTGTCCAACTTTCCGTCTATACTCGATTCAAAGACGATCAGACTGCAAGTGAATCGATACATGCTTTGAGTCTTGCTAGCATTGTAGTGACTGCAGCTCTTGTGCCCATTATCGTGAACCGCCTCTATGATCCTGCAAAGAAATACAGAGTCTACGAAAGAAGGGATATTATGCATTTAAAACCCAATGCTGAGCTCAAAATTCTTGCCTGCATTCACAGGTCAGGTAACATTCCTGCAGTCATCAATCTACTTGATGCAGCATGCCCATCTAAAGAAAACCCCATTGATATATATGTTCTTCACCTCATCGAATTAATTGGAAGAAGCTCCCCAGTTTTTATCTCCCACCAAATGCAGAAAAAGAGCATTTCCAATGGTTACTCGGACAATGTCATTCTTTACTTCAATAATTTCGTGAGAGAAAATCTTGGTGCTGTTACTTTAAACATATTCACAGCTATCTCTCCACCAAAATGCATGCAAGAAGACGTATGCACACTTGCAATGGACATGCACACATCCCTTATTGTGCTCCCGTTTCATCGAACATGGGCGATTGACGGGTCTATTGAGTCAGACGACAATGCAACAAGGACACTAAATCGCAATGTACTCGAAAGAGCTCCTTGCTCGGTAGGCATCCTTGTGGACCGTGGCCATTTATGCCTGTCCACCTCCGTTGTGGCTTTGGGACAATCATTTTCCGTGGCTGTAATCTTCTTCGGTGGGGAAGACGATAGGGAGGCATTAACATTTGCAAAAAGAATGGCCAGCGACTCGGCGATTAGCTTAACTGTGATCCGATTAGTTGCTGTGACTAATGATTTTACTACCGGTGGGGAATGGGATAAAATACTTGATACTGAGTTATTGAAGGAGTTTACACAGAGTCAGGCGGGTGAAGGGTTTGTGATAATTTTAGAGGAGTTGGTGAAAGATGGACCGCAAACAGCATTACTACTAAGGTCTATAGTGGATGAGTATGATCTAATTATAGTTGGGAGAAGGTTTCAGACAGAGTGCCCTCAGACTGCAGGACTTTCGGAATGGAGTGACTTTCCTGAGCTAGGGACTATAGGAGACCTGCTTGCATCAACCGATTTAAATTGTAAAACTTCAATTCTAGTGATAAAACATCAACTACAGAACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

747

Amino Acids

83.03

Weight (kDa)

5.74

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	38 - 401	2.3e-31	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	460 - 583	2.2e-15	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	596 - 742	8.4e-09	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44900 AT5G22900
fragaria_vesca	FvH4_3g06341 FvH4_3g23050 FvH4_3g39831 FvH4_6g14510 FvH4_7g14610
malus_domestica	MD02G1295300.v1.1 MD03G1057300.v1.1 MD05G1291400.v1.1 MD10G1267300.v1.1 MD11G1059200.v1.1 MD14G1082300.v1.1
prunus_persica	Prupe.1G346300_v2.0.a1 Prupe.2G029000_v2.0.a1 Prupe.4G074200_v2.0.a1 Prupe.6G047400_v2.0.a1 Prupe.6G047500_v2.0.a1 Prupe.6G047600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0356111 RchiOBHm_Chr1g0356121 RchiOBHm_Chr4g0446581 RchiOBHm_Chr5g0071781
rosa_laevigata	RLG00000005649 RLG00000028106 RLG00000036246 RLG00000036247 RLG00000036248
rosa_multiflora	Rmu_sc0001113.1_g000009 Rmu_sc0002569.1_g000023 Rmu_sc0003229.1_g000013 Rmu_sc0036166.1_g000001 Rmu_ssc0000144.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009380 Rroxscaffold_1G00009410 Rroxscaffold_4G00299800 Rroxscaffold_5G00386970
rosa_rugosa	Rorug04G0372400 Rorug05G0414600 Rorug05G0414700
rosa_samantha	Rh1AG262500 Rh1BG231000 Rh1CG245800 Rh4AG434100 Rh4BG443300 Rh4CG460600 Rh4DG442100 Rh5AG470700 Rh5BG490400 Rh5CG514400 Rh5DG501400 Rh5DG501600 Rh5DG501700
rosa_wichuraiana	Rw1G023190 Rw4G037110 Rw5G043740 Rw5G043750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2181
AccB7I	CCANNNNNTGG	1 cut(s)	793
AccI	GTMKAC	1 cut(s)	1239
AciI	CCGC	7 cut(s)	61, 64, 510, 692, 1207, 1985, 2033
AclWI	GGATC	4 cut(s)	358, 847, 1211, 1882
AcoI	YGGCCR	5 cut(s)	493, 775, 951, 1744, 1857
AcsI	RAATTY	3 cut(s)	481, 922, 1287
AfaI	GTAC	3 cut(s)	538, 569, 1701
AfiI	CCNNNNNNNGG	3 cut(s)	116, 793, 2156
AgeI	ACCGGT	2 cut(s)	302, 1922
AgsI	TTSAA	8 cut(s)	464, 851, 943, 1045, 1117, 1495, 1963, 2208
AjnI	CCWGG	2 cut(s)	261, 792
Alw21I	GWGCWC	4 cut(s)	11, 1284, 1623, 1714
Alw26I	GTCTC	3 cut(s)	103, 444, 2163
AlwI	GGATC	4 cut(s)	358, 847, 1211, 1882
AoxI	GGCC	6 cut(s)	130, 493, 775, 951, 1744, 1857
ApeKI	GCWGC	5 cut(s)	50, 630, 1008, 1181, 1346
ApoI	RAATTY	3 cut(s)	481, 922, 1287
AseI	ATTAAT	1 cut(s)	1403
AsiGI	ACCGGT	2 cut(s)	302, 1922
Asp700I	GAANNNNTTC	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	5 cut(s)	107, 131, 259, 1738, 2030
AsuC2I	CCSGG	1 cut(s)	950
AsuHPI	GGTGA	6 cut(s)	224, 292, 688, 1382, 2000, 2032
AsuNHI	GCTAGC	2 cut(s)	637, 1163
AvaII	GGWCC	4 cut(s)	107, 259, 1738, 2030
BaeGI	GKGCMC	2 cut(s)	1194, 2114
BalI	TGGCCA	2 cut(s)	1746, 1859
BanII	GRGCYC	2 cut(s)	1284, 1714
BauI	CACGAG	1 cut(s)	180
BbsI	GAAGAC	4 cut(s)	471, 859, 1581, 1827
Bbv12I	GWGCWC	4 cut(s)	11, 1284, 1623, 1714
BbvI	GCAGC	5 cut(s)	37, 642, 1020, 1193, 1358
BccI	CCATC	3 cut(s)	363, 1363, 2021
BceAI	ACGGC	1 cut(s)	790
BciT130I	CCWGG	2 cut(s)	263, 794
BclI	TGATCA	1 cut(s)	297
BcnI	CCSGG	1 cut(s)	950
BcoDI	GTCTC	3 cut(s)	103, 444, 2163
BfaI	CTAG	6 cut(s)	242, 500, 638, 1164, 2156, 2213
BfmI	CTRYAG	6 cut(s)	1179, 1323, 2058, 2121, 2163, 2231
BfuAI	ACCTGC	1 cut(s)	2181
BisI	GCNGC	6 cut(s)	51, 64, 631, 1009, 1182, 1347
BlpI	GCTNAGC	1 cut(s)	1278
BlsI	GCNGC	6 cut(s)	52, 65, 632, 1010, 1183, 1348
Bme1390I	CCNGG	3 cut(s)	263, 794, 950
Bme18I	GGWCC	4 cut(s)	107, 259, 1738, 2030
BmgT120I	GGNCC	5 cut(s)	107, 131, 259, 1738, 2030
BmiI	GGNNCC	1 cut(s)	148
BmrFI	CCNGG	3 cut(s)	263, 794, 950
BmrI	ACTGGG	1 cut(s)	1415
BmsI	GCATC	6 cut(s)	521, 732, 1039, 1333, 1737, 2189
BmtI	GCTAGC	2 cut(s)	641, 1167
BmuI	ACTGGG	1 cut(s)	1415
BpiI	GAAGAC	4 cut(s)	471, 859, 1581, 1827
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpmI	CTGGAG	1 cut(s)	1063
Bpu10I	CCTNAGC	1 cut(s)	2151
Bpu1102I	GCTNAGC	1 cut(s)	1278
BpuEI	CTTGAG	1 cut(s)	861
BpuMI	CCSGG	1 cut(s)	950
Bsa29I	ATCGAT	1 cut(s)	1142
BsaI	GGTCTC	2 cut(s)	103, 2163
BsaJI	CCNNGG	2 cut(s)	1741, 1794
BsaWI	WCCGGW	2 cut(s)	302, 1922
BsaXI	ACNNNNNCTCC	2 cut(s)	424, 454
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 793, 2156
Bse118I	RCCGGY	2 cut(s)	302, 1922
Bse1I	ACTGG	3 cut(s)	109, 336, 1421
Bse3DI	GCAATG	3 cut(s)	918, 1599, 1702
BseBI	CCWGG	2 cut(s)	263, 794
BseCI	ATCGAT	1 cut(s)	1142
BseDI	CCNNGG	2 cut(s)	1741, 1794
BseGI	GGATG	3 cut(s)	1607, 1728, 2071
BseLI	CCNNNNNNNGG	3 cut(s)	116, 793, 2156
BseMI	GCAATG	3 cut(s)	918, 1599, 1702
BseMII	CTCAG	4 cut(s)	1269, 1944, 2129, 2142
BseNI	ACTGG	3 cut(s)	109, 336, 1421
BseRI	GAGGAG	8 cut(s)	25, 92, 95, 98, 101, 104, 107, 2027
BseSI	GKGCMC	2 cut(s)	1194, 2114
BseX3I	CGGCCG	1 cut(s)	493
BseXI	GCAGC	5 cut(s)	37, 642, 1020, 1193, 1358
BseYI	CCCAGC	2 cut(s)	208, 820
Bsh1285I	CGRYCG	1 cut(s)	496
BshFI	GGCC	6 cut(s)	132, 495, 777, 953, 1746, 1859
BshTI	ACCGGT	2 cut(s)	302, 1922
BshVI	ATCGAT	1 cut(s)	1142
BsiEI	CGRYCG	1 cut(s)	496
BsiHKAI	GWGCWC	4 cut(s)	11, 1284, 1623, 1714
BsiSI	CCGG	3 cut(s)	303, 950, 1923
BslFI	GGGAC	4 cut(s)	308, 803, 1794, 2173
BslI	CCNNNNNNNGG	3 cut(s)	116, 793, 2156
BsmAI	GTCTC	3 cut(s)	103, 444, 2163
BsmBI	CGTCTC	1 cut(s)	444
BsmFI	GGGAC	4 cut(s)	308, 803, 1794, 2173
BsmI	GAATGC	1 cut(s)	1299
BsnI	GGCC	6 cut(s)	132, 495, 777, 953, 1746, 1859
Bso31I	GGTCTC	2 cut(s)	103, 2163
Bsp1286I	GDGCHC	6 cut(s)	11, 1194, 1284, 1623, 1714, 2114
Bsp1407I	TGTACA	1 cut(s)	567
Bsp143I	GATC	8 cut(s)	297, 363, 388, 839, 1123, 1216, 1887, 2074
Bsp1720I	GCTNAGC	1 cut(s)	1278
BspACI	CCGC	7 cut(s)	61, 64, 510, 692, 1207, 1985, 2033
BspANI	GGCC	6 cut(s)	132, 495, 777, 953, 1746, 1859
BspCNI	CTCAG	4 cut(s)	1270, 1945, 2128, 2143
BspDI	ATCGAT	1 cut(s)	1142
BspHI	TCATGA	1 cut(s)	360
BspLI	GGNNCC	1 cut(s)	148
BspMAI	CTGCAG	3 cut(s)	1183, 1327, 2125
BspMI	ACCTGC	1 cut(s)	2181
BspOI	GCTAGC	2 cut(s)	641, 1167
BspPI	GGATC	4 cut(s)	358, 847, 1211, 1882
BspTNI	GGTCTC	2 cut(s)	103, 2163
BsrDI	GCAATG	3 cut(s)	918, 1599, 1702
BsrFI	RCCGGY	2 cut(s)	302, 1922
BsrGI	TGTACA	1 cut(s)	567
BsrI	ACTGG	3 cut(s)	109, 336, 1421
BssAI	RCCGGY	2 cut(s)	302, 1922
BssECI	CCNNGG	2 cut(s)	1741, 1794
BssMI	GATC	8 cut(s)	297, 363, 388, 839, 1123, 1216, 1887, 2074
BssSI	CACGAG	1 cut(s)	180
Bst2BI	CACGAG	1 cut(s)	180
Bst2UI	CCWGG	2 cut(s)	263, 794
Bst4CI	ACNGT	4 cut(s)	669, 958, 1742, 1885
BstAUI	TGTACA	1 cut(s)	567
BstDEI	CTNAG	8 cut(s)	127, 399, 1073, 1278, 1953, 2051, 2115, 2151
BstDSI	CCRYGG	2 cut(s)	1741, 1794
BstENI	CCTNNNNNAGG	1 cut(s)	2154
BstF5I	GGATG	3 cut(s)	1607, 1728, 2071
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	8 cut(s)	300, 366, 391, 842, 1126, 1219, 1890, 2077
BstMAI	GTCTC	3 cut(s)	103, 444, 2163
BstMBI	GATC	8 cut(s)	297, 363, 388, 839, 1123, 1216, 1887, 2074
BstMCI	CGRYCG	1 cut(s)	496
BstMWI	GCNNNNNNNGC	7 cut(s)	63, 509, 691, 917, 1083, 1725, 1752
BstNI	CCWGG	2 cut(s)	263, 794
BstNSI	RCATGY	5 cut(s)	637, 1151, 1353, 1570, 1603
BstSCI	CCNGG	3 cut(s)	261, 792, 948
BstSFI	CTRYAG	6 cut(s)	1179, 1323, 2058, 2121, 2163, 2231
BstSLI	GKGCMC	2 cut(s)	1194, 2114
BstV1I	GCAGC	5 cut(s)	37, 642, 1020, 1193, 1358
BstV2I	GAAGAC	4 cut(s)	471, 859, 1581, 1827
BstZI	CGGCCG	1 cut(s)	493
Bsu15I	ATCGAT	1 cut(s)	1142
BsuRI	GGCC	6 cut(s)	132, 495, 777, 953, 1746, 1859
BsuTUI	ATCGAT	1 cut(s)	1142
BtgI	CCRYGG	2 cut(s)	1741, 1794
BtsCI	GGATG	3 cut(s)	1607, 1728, 2071
BtsI	GCAGTG	1 cut(s)	963
BtsIMutI	CAGTG	2 cut(s)	529, 963
BveI	ACCTGC	1 cut(s)	2181
CciI	TCATGA	1 cut(s)	360
CfoI	GCGC	1 cut(s)	288
Cfr10I	RCCGGY	2 cut(s)	302, 1922
Cfr13I	GGNCC	5 cut(s)	107, 131, 259, 1738, 2030
ClaI	ATCGAT	1 cut(s)	1142
Csp6I	GTAC	3 cut(s)	537, 568, 1700
CspAI	ACCGGT	2 cut(s)	302, 1922
CspCI	CAANNNNNGTGG	2 cut(s)	1750, 1785
CviQI	GTAC	3 cut(s)	537, 568, 1700
DdeI	CTNAG	8 cut(s)	127, 399, 1073, 1278, 1953, 2051, 2115, 2151
DpnI	GATC	8 cut(s)	299, 365, 390, 841, 1125, 1218, 1889, 2076
DpnII	GATC	8 cut(s)	297, 363, 388, 839, 1123, 1216, 1887, 2074
DraI	TTTAAA	3 cut(s)	1266, 1533, 2193
EaeI	YGGCCR	5 cut(s)	493, 775, 951, 1744, 1857
EagI	CGGCCG	1 cut(s)	493
Ecl136II	GAGCTC	2 cut(s)	1282, 1712
EclXI	CGGCCG	1 cut(s)	493
Eco24I	GRGCYC	2 cut(s)	1284, 1714
Eco31I	GGTCTC	2 cut(s)	103, 2163
Eco47I	GGWCC	4 cut(s)	107, 259, 1738, 2030
Eco52I	CGGCCG	1 cut(s)	493
Eco53kI	GAGCTC	2 cut(s)	1282, 1712
EcoICRI	GAGCTC	2 cut(s)	1282, 1712
EcoNI	CCTNNNNNAGG	1 cut(s)	2154
EcoO109I	RGGNCCY	1 cut(s)	131
EcoRII	CCWGG	2 cut(s)	261, 792
EcoT22I	ATGCAT	3 cut(s)	1054, 1263, 1568
EcoT38I	GRGCYC	2 cut(s)	1284, 1714
Esp3I	CGTCTC	1 cut(s)	444
FalI	AAGNNNNNCTT	4 cut(s)	158, 190, 1699, 1731
FaqI	GGGAC	4 cut(s)	308, 803, 1794, 2173
FauI	CCCGC	2 cut(s)	699, 1978
FauNDI	CATATG	1 cut(s)	907
FbaI	TGATCA	1 cut(s)	297
FblI	GTMKAC	1 cut(s)	1239
Fnu4HI	GCNGC	6 cut(s)	51, 64, 631, 1009, 1182, 1347
FokI	GGATG	3 cut(s)	1594, 1715, 2078
FriOI	GRGCYC	2 cut(s)	1284, 1714
Fsp4HI	GCNGC	6 cut(s)	51, 64, 631, 1009, 1182, 1347
FspBI	CTAG	6 cut(s)	242, 500, 638, 1164, 2156, 2213
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	6 cut(s)	51, 64, 631, 1009, 1182, 1347
GsaI	CCCAGC	2 cut(s)	212, 824
GsuI	CTGGAG	1 cut(s)	1063
HaeIII	GGCC	6 cut(s)	132, 495, 777, 953, 1746, 1859
HapII	CCGG	3 cut(s)	303, 950, 1923
HhaI	GCGC	1 cut(s)	288
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	9 cut(s)	26, 472, 1113, 1139, 1156, 1236, 1661, 1865, 1978
HpaII	CCGG	3 cut(s)	303, 950, 1923
HphI	GGTGA	6 cut(s)	224, 292, 688, 1382, 2000, 2032
Hpy166II	GTNNAC	5 cut(s)	1204, 1240, 1738, 1761, 1971
Hpy188III	TCNNGA	9 cut(s)	163, 182, 361, 461, 848, 1080, 1201, 1504, 2150
Hpy8I	GTNNAC	5 cut(s)	1204, 1240, 1738, 1761, 1971
HpyAV	CCTTC	8 cut(s)	144, 160, 467, 910, 1242, 1957, 1985, 2088
HpyCH4III	ACNGT	4 cut(s)	669, 958, 1742, 1885
HpyCH4IV	ACGT	1 cut(s)	1578
HpyF10VI	GCNNNNNNNGC	7 cut(s)	63, 509, 691, 917, 1083, 1725, 1752
HpyF3I	CTNAG	8 cut(s)	127, 399, 1073, 1278, 1953, 2051, 2115, 2151
HpySE526I	ACGT	1 cut(s)	1578
HspAI	GCGC	1 cut(s)	286
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	8 cut(s)	297, 363, 388, 839, 1123, 1216, 1887, 2074
LmnI	GCTCC	8 cut(s)	146, 617, 864, 1024, 1082, 1421, 1626, 1717
Lsp1109I	GCAGC	5 cut(s)	37, 642, 1020, 1193, 1358
LweI	GCATC	6 cut(s)	521, 732, 1039, 1333, 1737, 2189
MaeI	CTAG	6 cut(s)	242, 500, 638, 1164, 2156, 2213
MaeII	ACGT	1 cut(s)	1578
MaeIII	GTNAC	9 cut(s)	182, 331, 898, 1174, 1313, 1466, 1525, 1903, 2141
MalI	GATC	8 cut(s)	299, 365, 390, 841, 1125, 1218, 1889, 2076
MboI	GATC	8 cut(s)	297, 363, 388, 839, 1123, 1216, 1887, 2074
MhlI	GDGCHC	6 cut(s)	11, 1194, 1284, 1623, 1714, 2114
MlsI	TGGCCA	2 cut(s)	1746, 1859
MluNI	TGGCCA	2 cut(s)	1746, 1859
MlyI	GAGTC	5 cut(s)	1165, 1245, 1670, 1859, 1987
MmeI	TCCRAC	4 cut(s)	63, 226, 682, 1117
Mox20I	TGGCCA	2 cut(s)	1746, 1859
Mph1103I	ATGCAT	3 cut(s)	1054, 1263, 1568
MroXI	GAANNNNTTC	1 cut(s)	231
MscI	TGGCCA	2 cut(s)	1746, 1859
MseI	TTAA	9 cut(s)	375, 708, 1265, 1403, 1532, 1838, 1880, 2192, 2242
MslI	CAYNNNNRTG	6 cut(s)	734, 896, 1172, 1199, 1561, 1733
Msp20I	TGGCCA	2 cut(s)	1746, 1859
MspA1I	CMGCKG	1 cut(s)	824
MspI	CCGG	3 cut(s)	303, 950, 1923
MspR9I	CCNGG	3 cut(s)	263, 794, 950
Mva1269I	GAATGC	1 cut(s)	1299
MvaI	CCWGG	2 cut(s)	263, 794
MwoI	GCNNNNNNNGC	7 cut(s)	63, 509, 691, 917, 1083, 1725, 1752
NciI	CCSGG	1 cut(s)	950
NdeI	CATATG	1 cut(s)	907
NdeII	GATC	8 cut(s)	297, 363, 388, 839, 1123, 1216, 1887, 2074
NheI	GCTAGC	2 cut(s)	637, 1163
NlaIV	GGNNCC	1 cut(s)	148
NmeAIII	GCCGAG	1 cut(s)	1847
NmuCI	GTSAC	5 cut(s)	182, 898, 1174, 1903, 2141
NsiI	ATGCAT	3 cut(s)	1054, 1263, 1568
NspI	RCATGY	5 cut(s)	637, 1151, 1353, 1570, 1603
PaeI	GCATGC	3 cut(s)	637, 1353, 1570
PagI	TCATGA	1 cut(s)	360
PctI	GAATGC	1 cut(s)	1299
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	4 cut(s)	26, 472, 1113, 1139
PflFI	GACNNNGTC	2 cut(s)	436, 1478
PflMI	CCANNNNNTGG	1 cut(s)	793
PinAI	ACCGGT	2 cut(s)	302, 1922
PkrI	GCNGC	6 cut(s)	52, 65, 632, 1010, 1183, 1348
PleI	GAGTC	5 cut(s)	1164, 1244, 1669, 1859, 1986
PpsI	GAGTC	5 cut(s)	1164, 1244, 1669, 1859, 1986
PshBI	ATTAAT	1 cut(s)	1403
Psp124BI	GAGCTC	2 cut(s)	1284, 1714
Psp6I	CCWGG	2 cut(s)	261, 792
PspFI	CCCAGC	2 cut(s)	208, 820
PspGI	CCWGG	2 cut(s)	261, 792
PspN4I	GGNNCC	1 cut(s)	148
PspPI	GGNCC	5 cut(s)	107, 131, 259, 1738, 2030
PstI	CTGCAG	3 cut(s)	1183, 1327, 2125
PsyI	GACNNNGTC	2 cut(s)	436, 1478
PvuII	CAGCTG	1 cut(s)	824
RsaI	GTAC	3 cut(s)	538, 569, 1701
RsaNI	GTAC	3 cut(s)	537, 568, 1700
RseI	CAYNNNNRTG	6 cut(s)	734, 896, 1172, 1199, 1561, 1733
SacI	GAGCTC	2 cut(s)	1284, 1714
SaqAI	TTAA	9 cut(s)	375, 708, 1265, 1403, 1532, 1838, 1880, 2192, 2242
SatI	GCNGC	6 cut(s)	51, 64, 631, 1009, 1182, 1347
Sau3AI	GATC	8 cut(s)	297, 363, 388, 839, 1123, 1216, 1887, 2074
Sau96I	GGNCC	5 cut(s)	107, 131, 259, 1738, 2030
SchI	GAGTC	5 cut(s)	1165, 1245, 1670, 1859, 1987
ScrFI	CCNGG	3 cut(s)	263, 794, 950
SduI	GDGCHC	6 cut(s)	11, 1194, 1284, 1623, 1714, 2114
SfaNI	GCATC	6 cut(s)	521, 732, 1039, 1333, 1737, 2189
SfcI	CTRYAG	6 cut(s)	1179, 1323, 2058, 2121, 2163, 2231
SinI	GGWCC	4 cut(s)	107, 259, 1738, 2030
SmiI	ATTTAAAT	1 cut(s)	2193
SmiMI	CAYNNNNRTG	6 cut(s)	734, 896, 1172, 1199, 1561, 1733
SmlI	CTYRAG	1 cut(s)	876
SmoI	CTYRAG	1 cut(s)	876
SphI	GCATGC	3 cut(s)	637, 1353, 1570
SsiI	CCGC	7 cut(s)	61, 64, 510, 692, 1207, 1985, 2033
SspMI	CTAG	6 cut(s)	242, 500, 638, 1164, 2156, 2213
SstI	GAGCTC	2 cut(s)	1284, 1714
StyD4I	CCNGG	3 cut(s)	261, 792, 948
SwaI	ATTTAAAT	1 cut(s)	2193
TaaI	ACNGT	4 cut(s)	669, 958, 1742, 1885
TaiI	ACGT	1 cut(s)	1581
TaqI	TCGA	7 cut(s)	162, 936, 1111, 1142, 1398, 1633, 1704
TatI	WGTACW	2 cut(s)	567, 1699
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	4 cut(s)	26, 472, 1113, 1139
Tru1I	TTAA	9 cut(s)	375, 708, 1265, 1403, 1532, 1838, 1880, 2192, 2242
Tru9I	TTAA	9 cut(s)	375, 708, 1265, 1403, 1532, 1838, 1880, 2192, 2242
TscAI	CASTG	2 cut(s)	529, 970
TseFI	GTSAC	5 cut(s)	182, 898, 1174, 1903, 2141
TseI	GCWGC	5 cut(s)	50, 630, 1008, 1181, 1346
Tsp45I	GTSAC	5 cut(s)	182, 898, 1174, 1903, 2141
TspDTI	ATGAA	6 cut(s)	240, 640, 859, 929, 973, 1619
TspGWI	ACGGA	4 cut(s)	550, 1090, 1756, 1783
TspRI	CASTG	2 cut(s)	529, 970
Tth111I	GACNNNGTC	2 cut(s)	436, 1478
Van91I	CCANNNNNTGG	1 cut(s)	793
VpaK11BI	GGWCC	4 cut(s)	107, 259, 1738, 2030
VspI	ATTAAT	1 cut(s)	1403
XagI	CCTNNNNNAGG	1 cut(s)	2154
XapI	RAATTY	3 cut(s)	481, 922, 1287
XceI	RCATGY	5 cut(s)	637, 1151, 1353, 1570, 1603
XcmI	CCANNNNNNNNNTGG	2 cut(s)	669, 1768
XmiI	GTMKAC	1 cut(s)	1239
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	6 cut(s)	242, 500, 638, 1164, 2156, 2213
Zsp2I	ATGCAT	3 cut(s)	1054, 1263, 1568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.