Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001192

Physical Location & Seq

Genomic Coordinates Reverse (-)

78554593 .. 78555842

Gene Structure 1250 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG501400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGGAAGAGAAAAACCCGTGGCTGAAACTATACTAGGTTTCGGAGTAGTCGTTGGCTACATACTGGCTCTTGTGTTCATATTCAGACCAATAATGTTTTGGGTGATTAGGCAGACCCCGGAAAACAGGCCTGTCAAGAAAAGTTATATCAATATCATAATAGTAGTGGTGCTTTTTTCTGGATTACTAACACATTATTACGGCCACACTTTTCTTTTCGGGCTTGTCTTATTTGGTATGGCTGTCCCAGCTGGACGACCTTTGGGATCAGCTCTTGAAGAAAAGCTCCATGTCGTCATTTCTCAAGTGCTTCTACCCATTTATGTGACTATATATGCAATGAGGGCAGATTTTTGGTTGGTCGATTTCAATGACCCGGCCACAGTAATCACTGCGATTCTGATCGTTTTCGTTTTTGTGGTCAAAATCATAGGCACCATGGTTGCTCCATTGTATTGTAAAATGCCCTTGAATTATGCATTTGTGCTTGCTCTTATTCTAAGCTCCAAAGGCGTTGTCCAAATTTCCATCTATACTACATTCAGAGACGATCAGACTGCAAGTGAATCGGTATATGCTTTGATTCTTGCTAGCATCGTAGTGACTGCAACTCTGGTGCCAATTATCGTGAAGCGCCTCTATAATCCTGATGAAAAGAAATACGCAAGCTACGAGAGAAGAGATATTATGCATTTGAAACCCAATGCTGAACTCAGAATTCTTGCCTGCATTCACAGGTCCGGTAACATTCCTGCAGTCATCAATCTAGTTGATGCAGCATGCCCATCTAAAGAAAACCCCATTGCTATTTATGTTCTTCACCTCATCGAATTAATTGGAAGAAGCTCCCCACTTTTTATCTCCCACCAATTGCAGAAAAAGAGCGCGCGATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

298

Amino Acids

33.35

Weight (kDa)

9.42

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	7 - 213	1.5e-17	Sodium/hydrogen exchanger, transmembrane

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44900 AT5G22900
fragaria_vesca	FvH4_3g06341 FvH4_3g23050 FvH4_3g39831 FvH4_6g14510 FvH4_7g14610
malus_domestica	MD02G1295300.v1.1 MD03G1057300.v1.1 MD05G1291400.v1.1 MD10G1267300.v1.1 MD11G1059200.v1.1 MD14G1082300.v1.1
prunus_persica	Prupe.1G346300_v2.0.a1 Prupe.2G029000_v2.0.a1 Prupe.4G074200_v2.0.a1 Prupe.6G047400_v2.0.a1 Prupe.6G047500_v2.0.a1 Prupe.6G047600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0356111 RchiOBHm_Chr1g0356121 RchiOBHm_Chr4g0446581 RchiOBHm_Chr5g0071781
rosa_laevigata	RLG00000005649 RLG00000028106 RLG00000036246 RLG00000036247 RLG00000036248
rosa_multiflora	Rmu_sc0001113.1_g000009 Rmu_sc0002569.1_g000023 Rmu_sc0003229.1_g000013 Rmu_sc0036166.1_g000001 Rmu_ssc0000144.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009380 Rroxscaffold_1G00009410 Rroxscaffold_4G00299800 Rroxscaffold_5G00386970
rosa_rugosa	Rorug04G0372400 Rorug05G0414600 Rorug05G0414700
rosa_samantha	Rh1AG262500 Rh1BG231000 Rh1CG245800 Rh4AG434100 Rh4BG443300 Rh4CG460600 Rh4DG442100 Rh5AG470700 Rh5BG490400 Rh5CG514400 Rh5DG501400 Rh5DG501600 Rh5DG501700
rosa_wichuraiana	Rw1G023190 Rw4G037110 Rw5G043740 Rw5G043750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	434, 616
AccII	CGCG	2 cut(s)	887, 889
AclWI	GGATC	1 cut(s)	274
AcoI	YGGCCR	2 cut(s)	202, 378
AcsI	RAATTY	2 cut(s)	522, 717
AgsI	TTSAA	4 cut(s)	278, 370, 472, 697
AluBI	AGCT	6 cut(s)	251, 272, 286, 504, 669, 846
AluI	AGCT	6 cut(s)	251, 272, 286, 504, 669, 846
Alw26I	GTCTC	1 cut(s)	540
AlwI	GGATC	1 cut(s)	274
AoxI	GGCC	3 cut(s)	128, 202, 378
ApeKI	GCWGC	1 cut(s)	776
ApoI	RAATTY	2 cut(s)	522, 717
ArsI	GACNNNNNNTTYG	2 cut(s)	501, 533
AseI	ATTAAT	1 cut(s)	833
AspLEI	GCGC	3 cut(s)	636, 887, 889
AspS9I	GGNCC	1 cut(s)	738
AsuC2I	CCSGG	2 cut(s)	119, 377
AsuHPI	GGTGA	2 cut(s)	115, 812
AsuNHI	GCTAGC	1 cut(s)	590
AvaII	GGWCC	1 cut(s)	738
BanI	GGYRCC	2 cut(s)	434, 616
BbvI	GCAGC	1 cut(s)	788
BccI	CCATC	2 cut(s)	536, 793
BceAI	ACGGC	1 cut(s)	217
BcgI	CGANNNNNNTGC	4 cut(s)	539, 549, 573, 583
BcnI	CCSGG	2 cut(s)	119, 377
BcoDI	GTCTC	1 cut(s)	540
BfaI	CTAG	3 cut(s)	35, 591, 767
BfmI	CTRYAG	1 cut(s)	753
BfoI	RGCGCY	1 cut(s)	637
BisI	GCNGC	1 cut(s)	777
BlsI	GCNGC	1 cut(s)	778
Bme1390I	CCNGG	2 cut(s)	119, 377
Bme18I	GGWCC	1 cut(s)	738
BmgT120I	GGNCC	1 cut(s)	738
BmiI	GGNNCC	2 cut(s)	436, 618
BmrFI	CCNGG	2 cut(s)	119, 377
BmsI	GCATC	2 cut(s)	603, 763
BmtI	GCTAGC	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	288
BpuMI	CCSGG	2 cut(s)	119, 377
BsaBI	GATNNNNATC	1 cut(s)	401
BsaJI	CCNNGG	3 cut(s)	18, 117, 438
BsaWI	WCCGGW	1 cut(s)	740
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bse1I	ACTGG	1 cut(s)	69
Bse3DI	GCAATG	2 cut(s)	345, 801
Bse8I	GATNNNNATC	1 cut(s)	401
BseDI	CCNNGG	3 cut(s)	18, 117, 438
BseJI	GATNNNNATC	1 cut(s)	401
BseMI	GCAATG	2 cut(s)	345, 801
BseMII	CTCAG	1 cut(s)	727
BseNI	ACTGG	1 cut(s)	69
BsePI	GCGCGC	1 cut(s)	885
BseXI	GCAGC	1 cut(s)	788
BseYI	CCCAGC	1 cut(s)	247
Bsh1236I	CGCG	2 cut(s)	887, 889
BshFI	GGCC	3 cut(s)	130, 204, 380
BshNI	GGYRCC	2 cut(s)	434, 616
BsiSI	CCGG	3 cut(s)	119, 377, 741
BslFI	GGGAC	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	540
BsmBI	CGTCTC	1 cut(s)	540
BsmFI	GGGAC	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	729
BsnI	GGCC	3 cut(s)	130, 204, 380
Bsp143I	GATC	3 cut(s)	266, 402, 550
Bsp19I	CCATGG	1 cut(s)	438
BspANI	GGCC	3 cut(s)	130, 204, 380
BspCNI	CTCAG	1 cut(s)	726
BspFNI	CGCG	2 cut(s)	887, 889
BspLI	GGNNCC	2 cut(s)	436, 618
BspMAI	CTGCAG	1 cut(s)	757
BspOI	GCTAGC	1 cut(s)	594
BspPI	GGATC	1 cut(s)	274
BspT107I	GGYRCC	2 cut(s)	434, 616
BsrDI	GCAATG	2 cut(s)	345, 801
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	3 cut(s)	18, 117, 438
BssHII	GCGCGC	1 cut(s)	885
BssMI	GATC	3 cut(s)	266, 402, 550
BssT1I	CCWWGG	1 cut(s)	438
Bst4CI	ACNGT	1 cut(s)	385
Bst6I	CTCTTC	1 cut(s)	673
BstC8I	GCNNGC	6 cut(s)	489, 592, 667, 727, 781, 887
BstDEI	CTNAG	2 cut(s)	500, 713
BstDSI	CCRYGG	2 cut(s)	18, 438
BstFNI	CGCG	2 cut(s)	887, 889
BstH2I	RGCGCY	1 cut(s)	637
BstHHI	GCGC	3 cut(s)	636, 887, 889
BstKTI	GATC	3 cut(s)	269, 405, 553
BstMAI	GTCTC	1 cut(s)	540
BstMBI	GATC	3 cut(s)	266, 402, 550
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 344, 510
BstNSI	RCATGY	1 cut(s)	783
BstSCI	CCNGG	2 cut(s)	117, 375
BstSFI	CTRYAG	1 cut(s)	753
BstUI	CGCG	2 cut(s)	887, 889
BstV1I	GCAGC	1 cut(s)	788
BsuRI	GGCC	3 cut(s)	130, 204, 380
BtgI	CCRYGG	2 cut(s)	18, 438
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	6 cut(s)	489, 592, 667, 727, 781, 887
CfoI	GCGC	3 cut(s)	636, 887, 889
Cfr13I	GGNCC	1 cut(s)	738
CviAII	CATG	3 cut(s)	290, 439, 780
DdeI	CTNAG	2 cut(s)	500, 713
DpnI	GATC	3 cut(s)	268, 404, 552
DpnII	GATC	3 cut(s)	266, 402, 550
EaeI	YGGCCR	2 cut(s)	202, 378
Eam1104I	CTCTTC	1 cut(s)	673
EarI	CTCTTC	1 cut(s)	673
Eco130I	CCWWGG	1 cut(s)	438
Eco147I	AGGCCT	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	738
EcoRI	GAATTC	1 cut(s)	717
EcoT14I	CCWWGG	1 cut(s)	438
EcoT22I	ATGCAT	2 cut(s)	481, 693
ErhI	CCWWGG	1 cut(s)	438
Esp3I	CGTCTC	1 cut(s)	540
FaeI	CATG	3 cut(s)	293, 442, 783
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	3 cut(s)	289, 438, 779
Fnu4HI	GCNGC	1 cut(s)	777
Fsp4HI	GCNGC	1 cut(s)	777
FspBI	CTAG	3 cut(s)	35, 591, 767
GlaI	GCGC	3 cut(s)	635, 886, 888
GluI	GCNGC	1 cut(s)	777
GsaI	CCCAGC	1 cut(s)	251
HaeII	RGCGCY	1 cut(s)	637
HaeIII	GGCC	3 cut(s)	130, 204, 380
HapII	CCGG	3 cut(s)	119, 377, 741
HhaI	GCGC	3 cut(s)	636, 887, 889
Hin1II	CATG	3 cut(s)	293, 442, 783
Hin6I	GCGC	3 cut(s)	634, 885, 887
HinP1I	GCGC	3 cut(s)	634, 885, 887
HinfI	GANTC	4 cut(s)	397, 566, 583, 891
HpaII	CCGG	3 cut(s)	119, 377, 741
HphI	GGTGA	2 cut(s)	115, 812
Hpy188I	TCNGA	6 cut(s)	44, 86, 402, 545, 555, 716
Hpy188III	TCNNGA	5 cut(s)	136, 180, 275, 628, 647
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4V	TGCA	9 cut(s)	338, 479, 560, 608, 691, 729, 755, 776, 874
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 344, 510
HpyF3I	CTNAG	2 cut(s)	500, 713
Hsp92II	CATG	3 cut(s)	293, 442, 783
HspAI	GCGC	3 cut(s)	634, 885, 887
Kzo9I	GATC	3 cut(s)	266, 402, 550
LmnI	GCTCC	4 cut(s)	291, 451, 509, 851
Lsp1109I	GCAGC	1 cut(s)	788
LweI	GCATC	2 cut(s)	603, 763
MaeI	CTAG	3 cut(s)	35, 591, 767
MaeIII	GTNAC	3 cut(s)	325, 601, 743
MalI	GATC	3 cut(s)	268, 404, 552
MboI	GATC	3 cut(s)	266, 402, 550
MboII	GAAGA	5 cut(s)	18, 290, 690, 809, 852
MfeI	CAATTG	1 cut(s)	869
MluCI	AATT	7 cut(s)	472, 522, 621, 717, 830, 834, 869
MnlI	CCTC	3 cut(s)	336, 647, 833
Mph1103I	ATGCAT	2 cut(s)	481, 693
MseI	TTAA	1 cut(s)	833
MslI	CAYNNNNRTG	2 cut(s)	323, 599
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	3 cut(s)	119, 377, 741
MspR9I	CCNGG	2 cut(s)	119, 377
MunI	CAATTG	1 cut(s)	869
Mva1269I	GAATGC	1 cut(s)	729
MvnI	CGCG	2 cut(s)	887, 889
MwoI	GCNNNNNNNGC	3 cut(s)	248, 344, 510
NciI	CCSGG	2 cut(s)	119, 377
NcoI	CCATGG	1 cut(s)	438
NdeII	GATC	3 cut(s)	266, 402, 550
NheI	GCTAGC	1 cut(s)	590
NlaIII	CATG	3 cut(s)	293, 442, 783
NlaIV	GGNNCC	2 cut(s)	436, 618
NmuCI	GTSAC	2 cut(s)	325, 601
NsiI	ATGCAT	2 cut(s)	481, 693
NspI	RCATGY	1 cut(s)	783
PaeI	GCATGC	1 cut(s)	783
PauI	GCGCGC	1 cut(s)	885
PceI	AGGCCT	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 669
PctI	GAATGC	1 cut(s)	729
PfeI	GAWTC	4 cut(s)	397, 566, 583, 891
PkrI	GCNGC	1 cut(s)	778
PshBI	ATTAAT	1 cut(s)	833
PspFI	CCCAGC	1 cut(s)	247
PspN4I	GGNNCC	2 cut(s)	436, 618
PspPI	GGNCC	1 cut(s)	738
PstI	CTGCAG	1 cut(s)	757
PteI	GCGCGC	1 cut(s)	885
PvuII	CAGCTG	1 cut(s)	251
RseI	CAYNNNNRTG	2 cut(s)	323, 599
SaqAI	TTAA	1 cut(s)	833
SatI	GCNGC	1 cut(s)	777
Sau3AI	GATC	3 cut(s)	266, 402, 550
Sau96I	GGNCC	1 cut(s)	738
ScrFI	CCNGG	2 cut(s)	119, 377
SfaNI	GCATC	2 cut(s)	603, 763
SfcI	CTRYAG	1 cut(s)	753
SinI	GGWCC	1 cut(s)	738
SmiMI	CAYNNNNRTG	2 cut(s)	323, 599
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
SphI	GCATGC	1 cut(s)	783
Sse9I	AATT	7 cut(s)	472, 522, 621, 717, 830, 834, 869
SseBI	AGGCCT	1 cut(s)	130
SspMI	CTAG	3 cut(s)	35, 591, 767
StuI	AGGCCT	1 cut(s)	130
StyD4I	CCNGG	2 cut(s)	117, 375
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	1 cut(s)	385
TaqI	TCGA	2 cut(s)	363, 828
TasI	AATT	7 cut(s)	472, 522, 621, 717, 830, 834, 869
TfiI	GAWTC	4 cut(s)	397, 566, 583, 891
Tru1I	TTAA	1 cut(s)	833
Tru9I	TTAA	1 cut(s)	833
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	2 cut(s)	325, 601
TseI	GCWGC	1 cut(s)	776
Tsp45I	GTSAC	2 cut(s)	325, 601
TspDTI	ATGAA	2 cut(s)	67, 666
TspRI	CASTG	1 cut(s)	397
VpaK11BI	GGWCC	1 cut(s)	738
VspI	ATTAAT	1 cut(s)	833
XapI	RAATTY	2 cut(s)	522, 717
XceI	RCATGY	1 cut(s)	783
XcmI	CCANNNNNNNNNTGG	1 cut(s)	96
XspI	CTAG	3 cut(s)	35, 591, 767
Zsp2I	ATGCAT	2 cut(s)	481, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.