Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001192

Physical Location & Seq

Genomic Coordinates Reverse (-)

57328277 .. 57329391

Gene Structure 1115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0414600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCTACTGAAAATTGGCAAGTGGTGGGTGACATCACCTGCAACCCAAGATACCTAGGTCTTGTTCAACCTGGAAAGGAGCTGCCTTACACCAAATTCTTGATGGATTTCAATATCAAGATGAGATGCGCGCAATCTATTGATTTGGAGGGTGATGAAGAAATTGTAGAAGAGAAGAATCTCCGCTCAGTCGAACTTGAGTACAACCCAAATAGCATGTGGGTTGCCATAAATAAAGAGCTTCAAGACCTGCGAGTTCCGAGCCAAGTTCGTGCAGCCATTGAAGATCCAATACTCAAGGGAACCAGAGTGGCACGAGCTGATAGCTCTTATGACGCTCGCAAGTATCTGCATATGGTGGTGGATATTGATTTTCGAGTTGGCGGTTTTGATGGTATTGGTGAATATGAGCCTATGTTTGTGCCGGTAAGTGAAGTGTCCATTAAAAAACTGGAGAAGACAAGAGCTGAAGTGTCGTCGACAATGTGCATGGTTGTTGTACCCTGGAGGGTAGGGCGCCACAAACCTGCTACACCGAGACATTGTCTCCGAGGGGCGAAATCTAGTACTCTTAAGGGCAGTGTTTACACGCCTCAACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

200

Amino Acids

22.71

Weight (kDa)

7.65

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44900 AT5G22900
fragaria_vesca	FvH4_3g06341 FvH4_3g23050 FvH4_3g39831 FvH4_6g14510 FvH4_7g14610
malus_domestica	MD02G1295300.v1.1 MD03G1057300.v1.1 MD05G1291400.v1.1 MD10G1267300.v1.1 MD11G1059200.v1.1 MD14G1082300.v1.1
prunus_persica	Prupe.1G346300_v2.0.a1 Prupe.2G029000_v2.0.a1 Prupe.4G074200_v2.0.a1 Prupe.6G047400_v2.0.a1 Prupe.6G047500_v2.0.a1 Prupe.6G047600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0356111 RchiOBHm_Chr1g0356121 RchiOBHm_Chr4g0446581 RchiOBHm_Chr5g0071781
rosa_laevigata	RLG00000005649 RLG00000028106 RLG00000036246 RLG00000036247 RLG00000036248
rosa_multiflora	Rmu_sc0001113.1_g000009 Rmu_sc0002569.1_g000023 Rmu_sc0003229.1_g000013 Rmu_sc0036166.1_g000001 Rmu_ssc0000144.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009380 Rroxscaffold_1G00009410 Rroxscaffold_4G00299800 Rroxscaffold_5G00386970
rosa_rugosa	Rorug04G0372400 Rorug05G0414600 Rorug05G0414700
rosa_samantha	Rh1AG262500 Rh1BG231000 Rh1CG245800 Rh4AG434100 Rh4BG443300 Rh4CG460600 Rh4DG442100 Rh5AG470700 Rh5BG490400 Rh5CG514400 Rh5DG501400 Rh5DG501600 Rh5DG501700
rosa_wichuraiana	Rw1G023190 Rw4G037110 Rw5G043740 Rw5G043750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	47
Acc36I	ACCTGC	3 cut(s)	47, 258, 535
AccB1I	GGYRCC	1 cut(s)	516
AccBSI	CCGCTC	1 cut(s)	186
AccI	GTMKAC	1 cut(s)	479
AccII	CGCG	1 cut(s)	131
AciI	CCGC	2 cut(s)	184, 384
AclI	AACGTT	1 cut(s)	598
AclWI	GGATC	1 cut(s)	281
AcsI	RAATTY	1 cut(s)	95
AcuI	CTGAAG	1 cut(s)	489
AcyI	GRCGYC	1 cut(s)	517
AfaI	GTAC	3 cut(s)	203, 501, 568
AflII	CTTAAG	1 cut(s)	572
AgsI	TTSAA	4 cut(s)	68, 112, 245, 284
AjnI	CCWGG	2 cut(s)	70, 503
AluBI	AGCT	5 cut(s)	82, 241, 320, 327, 467
AluI	AGCT	5 cut(s)	82, 241, 320, 327, 467
Alw26I	GTCTC	2 cut(s)	532, 551
AlwI	GGATC	1 cut(s)	281
ApeKI	GCWGC	2 cut(s)	82, 275
ApoI	RAATTY	1 cut(s)	95
AspA2I	CCTAGG	1 cut(s)	55
AspLEI	GCGC	3 cut(s)	131, 133, 519
AsuHPI	GGTGA	4 cut(s)	28, 41, 164, 413
AvrII	CCTAGG	1 cut(s)	55
BaeI	ACNNNNGTAYC	2 cut(s)	43, 76
BanI	GGYRCC	1 cut(s)	516
BarI	GAAGNNNNNNTAC	2 cut(s)	276, 308
BauI	CACGAG	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	464
BbvI	GCAGC	2 cut(s)	69, 287
BccI	CCATC	2 cut(s)	97, 386
BciT130I	CCWGG	2 cut(s)	72, 505
BcoDI	GTCTC	2 cut(s)	532, 551
BfaI	CTAG	2 cut(s)	56, 564
BfoI	RGCGCY	1 cut(s)	520
BfrI	CTTAAG	1 cut(s)	572
BfuAI	ACCTGC	3 cut(s)	47, 258, 535
BisI	GCNGC	2 cut(s)	83, 276
BlnI	CCTAGG	1 cut(s)	55
BlsI	GCNGC	2 cut(s)	84, 277
BmcAI	AGTACT	1 cut(s)	568
Bme1390I	CCNGG	2 cut(s)	72, 505
BmiI	GGNNCC	2 cut(s)	304, 518
BmrFI	CCNGG	2 cut(s)	72, 505
BmsI	GCATC	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	464
BpmI	CTGGAG	2 cut(s)	473, 526
BpuEI	CTTGAG	2 cut(s)	218, 281
BsaHI	GRCGYC	1 cut(s)	517
BsaJI	CCNNGG	3 cut(s)	55, 503, 550
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bse118I	RCCGGY	1 cut(s)	424
Bse1I	ACTGG	1 cut(s)	456
BseBI	CCWGG	2 cut(s)	72, 505
BseDI	CCNNGG	3 cut(s)	55, 503, 550
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	456
BsePI	GCGCGC	1 cut(s)	129
BseXI	GCAGC	2 cut(s)	69, 287
BsgI	GTGCAG	1 cut(s)	294
Bsh1236I	CGCG	1 cut(s)	131
BshNI	GGYRCC	1 cut(s)	516
BsiSI	CCGG	1 cut(s)	425
BsmAI	GTCTC	2 cut(s)	532, 551
Bsp143I	GATC	1 cut(s)	286
BspACI	CCGC	2 cut(s)	184, 384
BspCNI	CTCAG	1 cut(s)	200
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	2 cut(s)	304, 518
BspMI	ACCTGC	3 cut(s)	47, 258, 535
BspPI	GGATC	1 cut(s)	281
BspT107I	GGYRCC	1 cut(s)	516
BspTI	CTTAAG	1 cut(s)	572
BsrBI	CCGCTC	1 cut(s)	186
BsrFI	RCCGGY	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	456
BssAI	RCCGGY	1 cut(s)	424
BssECI	CCNNGG	3 cut(s)	55, 503, 550
BssHII	GCGCGC	1 cut(s)	129
BssMI	GATC	1 cut(s)	286
BssNI	GRCGYC	1 cut(s)	517
BssSI	CACGAG	1 cut(s)	315
BssT1I	CCWWGG	1 cut(s)	55
Bst2BI	CACGAG	1 cut(s)	315
Bst2UI	CCWGG	2 cut(s)	72, 505
Bst6I	CTCTTC	1 cut(s)	165
BstACI	GRCGYC	1 cut(s)	517
BstAFI	CTTAAG	1 cut(s)	572
BstC8I	GCNNGC	2 cut(s)	131, 340
BstDEI	CTNAG	1 cut(s)	187
BstFNI	CGCG	1 cut(s)	131
BstH2I	RGCGCY	1 cut(s)	520
BstHHI	GCGC	3 cut(s)	131, 133, 519
BstKTI	GATC	1 cut(s)	289
BstMAI	GTCTC	2 cut(s)	532, 551
BstMBI	GATC	1 cut(s)	286
BstNI	CCWGG	2 cut(s)	72, 505
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	2 cut(s)	70, 503
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	2 cut(s)	69, 287
BstV2I	GAAGAC	1 cut(s)	464
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BtsI	GCAGTG	1 cut(s)	586
BtsIMutI	CAGTG	1 cut(s)	586
BveI	ACCTGC	3 cut(s)	47, 258, 535
Cac8I	GCNNGC	2 cut(s)	131, 340
CfoI	GCGC	3 cut(s)	131, 133, 519
Cfr10I	RCCGGY	1 cut(s)	424
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	3 cut(s)	202, 500, 567
CviAII	CATG	2 cut(s)	217, 490
CviJI	RGCY	9 cut(s)	5, 82, 241, 264, 278, 320, 327, 412, 467
CviKI_1	RGCY	9 cut(s)	5, 82, 241, 264, 278, 320, 327, 412, 467
CviQI	GTAC	3 cut(s)	202, 500, 567
DdeI	CTNAG	1 cut(s)	187
DinI	GGCGCC	1 cut(s)	518
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	489
EcoRII	CCWGG	2 cut(s)	70, 503
EcoT14I	CCWWGG	1 cut(s)	55
EgeI	GGCGCC	1 cut(s)	518
EheI	GGCGCC	1 cut(s)	518
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	2 cut(s)	220, 493
FaiI	YATR	8 cut(s)	218, 230, 333, 354, 356, 408, 416, 491
FatI	CATG	2 cut(s)	216, 489
FauNDI	CATATG	1 cut(s)	354
FblI	GTMKAC	1 cut(s)	479
Fnu4HI	GCNGC	2 cut(s)	83, 276
Fsp4HI	GCNGC	2 cut(s)	83, 276
FspBI	CTAG	2 cut(s)	56, 564
GlaI	GCGC	3 cut(s)	130, 132, 518
GluI	GCNGC	2 cut(s)	83, 276
GsuI	CTGGAG	2 cut(s)	473, 526
HaeII	RGCGCY	1 cut(s)	520
HapII	CCGG	1 cut(s)	425
HgaI	GACGC	1 cut(s)	344
HhaI	GCGC	3 cut(s)	131, 133, 519
Hin1I	GRCGYC	1 cut(s)	517
Hin1II	CATG	2 cut(s)	220, 493
Hin6I	GCGC	3 cut(s)	129, 131, 517
HinP1I	GCGC	3 cut(s)	129, 131, 517
HincII	GTYRAC	1 cut(s)	480
HindII	GTYRAC	1 cut(s)	480
HinfI	GANTC	1 cut(s)	178
HpaII	CCGG	1 cut(s)	425
HphI	GGTGA	4 cut(s)	28, 41, 164, 413
Hpy166II	GTNNAC	2 cut(s)	480, 586
Hpy188I	TCNGA	2 cut(s)	261, 551
Hpy188III	TCNNGA	3 cut(s)	100, 118, 245
Hpy8I	GTNNAC	2 cut(s)	480, 586
Hpy99I	CGWCG	1 cut(s)	481
HpyCH4IV	ACGT	1 cut(s)	598
HpyCH4V	TGCA	4 cut(s)	42, 275, 352, 489
HpyF3I	CTNAG	1 cut(s)	187
HpySE526I	ACGT	1 cut(s)	598
Hsp92I	GRCGYC	1 cut(s)	517
Hsp92II	CATG	2 cut(s)	220, 493
HspAI	GCGC	3 cut(s)	129, 131, 517
KasI	GGCGCC	1 cut(s)	516
Kzo9I	GATC	1 cut(s)	286
LmnI	GCTCC	1 cut(s)	79
Lsp1109I	GCAGC	2 cut(s)	69, 287
LweI	GCATC	1 cut(s)	116
MaeI	CTAG	2 cut(s)	56, 564
MaeII	ACGT	1 cut(s)	598
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	1 cut(s)	288
MbiI	CCGCTC	1 cut(s)	186
MboI	GATC	1 cut(s)	286
MboII	GAAGA	5 cut(s)	170, 182, 187, 296, 469
MflI	RGATCY	1 cut(s)	286
MluCI	AATT	3 cut(s)	13, 95, 162
Mly113I	GGCGCC	1 cut(s)	517
MnlI	CCTC	4 cut(s)	142, 501, 545, 603
MseI	TTAA	3 cut(s)	444, 573, 601
MspCI	CTTAAG	1 cut(s)	572
MspI	CCGG	1 cut(s)	425
MspR9I	CCNGG	2 cut(s)	72, 505
MvaI	CCWGG	2 cut(s)	72, 505
MvnI	CGCG	1 cut(s)	131
NarI	GGCGCC	1 cut(s)	517
NdeI	CATATG	1 cut(s)	354
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	2 cut(s)	220, 493
NlaIV	GGNNCC	2 cut(s)	304, 518
NmuCI	GTSAC	1 cut(s)	29
NspI	RCATGY	1 cut(s)	220
PaqCI	CACCTGC	1 cut(s)	47
PauI	GCGCGC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	178
PflFI	GACNNNGTC	1 cut(s)	543
PkrI	GCNGC	2 cut(s)	84, 277
PluTI	GGCGCC	1 cut(s)	520
Psp1406I	AACGTT	1 cut(s)	598
Psp6I	CCWGG	2 cut(s)	70, 503
PspGI	CCWGG	2 cut(s)	70, 503
PspN4I	GGNNCC	2 cut(s)	304, 518
PsuI	RGATCY	1 cut(s)	286
PsyI	GACNNNGTC	1 cut(s)	543
PteI	GCGCGC	1 cut(s)	129
RsaI	GTAC	3 cut(s)	203, 501, 568
RsaNI	GTAC	3 cut(s)	202, 500, 567
SalI	GTCGAC	1 cut(s)	478
SaqAI	TTAA	3 cut(s)	444, 573, 601
SatI	GCNGC	2 cut(s)	83, 276
Sau3AI	GATC	1 cut(s)	286
ScaI	AGTACT	1 cut(s)	568
ScrFI	CCNGG	2 cut(s)	72, 505
SfaNI	GCATC	1 cut(s)	116
SfoI	GGCGCC	1 cut(s)	518
SmlI	CTYRAG	3 cut(s)	197, 296, 572
SmoI	CTYRAG	3 cut(s)	197, 296, 572
Sse9I	AATT	3 cut(s)	13, 95, 162
SsiI	CCGC	2 cut(s)	184, 384
SspDI	GGCGCC	1 cut(s)	516
SspMI	CTAG	2 cut(s)	56, 564
StyD4I	CCNGG	2 cut(s)	70, 503
StyI	CCWWGG	1 cut(s)	55
TaiI	ACGT	1 cut(s)	601
TaqI	TCGA	3 cut(s)	192, 376, 479
TasI	AATT	3 cut(s)	13, 95, 162
TatI	WGTACW	2 cut(s)	201, 566
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	3 cut(s)	444, 573, 601
Tru9I	TTAA	3 cut(s)	444, 573, 601
TscAI	CASTG	1 cut(s)	586
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	2 cut(s)	82, 275
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	171
TspRI	CASTG	1 cut(s)	586
Tth111I	GACNNNGTC	1 cut(s)	543
Vha464I	CTTAAG	1 cut(s)	572
XapI	RAATTY	1 cut(s)	95
XceI	RCATGY	1 cut(s)	220
XcmI	CCANNNNNNNNNTGG	3 cut(s)	100, 216, 448
XmaJI	CCTAGG	1 cut(s)	55
XmiI	GTMKAC	1 cut(s)	479
XspI	CTAG	2 cut(s)	56, 564
ZrmI	AGTACT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.