Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001192

Physical Location & Seq

Genomic Coordinates Reverse (-)

9491978 .. 9496624

Gene Structure 4647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1082300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2418 bp

ATGAAGTCGCTTGAAGATTTGTTGGCGCTAAACGTAACGCGGGACCATCAGGCACTGGTTTGCATCTCGCTCCCTCCCAACATTCATTCAAGCGGTTATTGGAGAAATTCTAAGGTAGATGATGAGTCGCCCTATTCTGCAACTCATCCATTGAGCGTCAAAAAACTCTCAAGTGCTACGTTGTCAGTCCTCGAAGAGCAAATGGCTTTGGCTTTTTTCCTCACCCAGTTCCTTCATCTCGCTCTCAAGTGCTTTGGAATCCCCGTCTTTGTCACTCAGATGCTGGCAGGTATAATCCTCGGTCCAGGGATGTTGGGGAGCATATGGCCTGGATACGAAAAAATCATGTACGACATTGTAAGTCAGGACGTAATGGGGACGTTAACGGTGTTGGGTTACTGCATGTTTTTATTTCTGATGGGAGTGAAAATGGACATCGGCATTGTACTTAGAACAGGGAGGAAGGCCTTGTACACCGGGGCTGGCTCCTTGATAGTGCCTTTATGCGTCGGTCTGTTTACTCTTGGAACCCGAGGTGTTTTTCTTAACTGGGAATTAGAGCAAAATGACTTGCAGGCCCTTGCATTAGCCGTAATCACAAACGCTCAGACTTCATTTACCGTCATTGCCTGCCTCCTCGGGGACCTCAAACTCCTCACTTCGGAACTAGGCCGCTTAGCACTCTCCTCGTCTATTGTGTCTGACATTTTGGGTTTGTCTCTTCGAACTTTTACCAAACTGGCTATGAGCACTGGAAAGGAGGGCGGATTTTTTCGCAACACGATTGCCATGCTCGGTTATATCCTTGTTGTTTACTTTGGGGCACGCCCTGCTATGTATTGGATCATCAGACAGACGCCCAAAGGCCAGCCTGTTCACAACGGCTACCTTCTTATCATCTTGATTGGGGTCTTATGCTCAGCGCTATTTTCCTTCTATTTTAATCAATATCTTTTCTTCGGCCCTTTCGTTTTGGGCTTAGCTGTCCCGGAAGGACCCCCGCTCGGCTCCGCTCTCGTCAAGTGCTACGATTTCATGGTGTCCGATATTCTTCTTCCACTGTTTGTAACCTCCAATGTGTGGCTCATGAATCCCAAAGACATCAAGTTTAAAGGAAAATTTGCAATTCCTAGTCTTGTCCTCCTCGTTGTGTCTACCGTCTCCAAATTTGGAGGCAGTTTACTACCTGCACTCTACTGTGACATGCCTCTAATGGATGCTTTGGGACTCGCTCTCATAATGTGCTGCAAAGGTGTCGTGGACTTGGGCTCCTTGAGCACCGTCACCAAAGATATGCCTTTGAATGAAGAGATTTATGCCATTAACGTACTTGGTATCCTAATGATCGCATGCGTTGTGTCATTGCTTTTGAAACACTTCAACATATCCTCAAAGAAGTATGGAGGATATGAGCAAAGAAACGTAGCGTGTTTGAAACCCAACTCAGAGCTCCGCATACTTGCATGCATTCACAAGCAAAACAACATTTCAGCCGTCATCAATTTTTTGGATGCCTGCTGTCCAACTAAAGAGAGCCCCATTTCCCTTTATGTCCTTCACCTCATTGAGATGTTTGGCCAAGCTGCCCCTATCTTCATTTCCCACAGAATGCAAACCAAGACACTCTCCAATTGCTCGTACTCGGAGGACATGCTTCTTTCTTTCCTTCAGTTCGAGCGGGACTTCAGTGAAGCAGTGACCGTACAACCTTTCACAGCCATTTCTCCAACCAAATCAATGCATGAGGATACATGCACCCTTGCACTTGACCGAGCCACGTCTCTCATAATACTCCCCTTCCATCGACATTGGACTCTTGATGGCTCTATCAAGTCCGACGATAGGGCTATAAGGTCTTTAAATATCAGTGTTCTCGAAAAAGCACCATGTTCTGTTGGGATTCTTATCAACCGTGGACCTCTAAGACAATTAGGACTGGAAAAAAACTCATCATCAGAAGCAGTACAATACAAAGTCGCCTTGATCTTCTTGGGAGGCGAAGACGATAGGGAGGCATTAGCCTTAACACTAAGGATGGCAGCGGATCCAAGCATCAGCCTGACCGTCTTTTATTTCACAACCTCGAGGGACTGTGAGGCCACTAACTGGGATAGGATAGTTGATTTGCAGAGCTTAAGAGAGTATAGGGAAGGCTATGTTCATGCTTGCGGATCAGCATTTTATGTAGAGAAGATTGCAAAAAATGGACCCGAAACAGTGGCAATACTTCGGAGTATTTTGAACGAATATGACCTTTTCGTTGTTGGAAGAAGAAAACATTGGGAAAGTCCTCAAACTTCAGGGCTTGATGAATGGAGTGAATTCCCGGAGCTTGGTATTATTGGGGACATGCTTGCCTCGGACGACTTCAGGTGCAGATCTTCAATCTTTGTGGTGCAACAACAACAAACCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

806

Amino Acids

88.94

Weight (kDa)

6.3

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	77 - 455	3.1e-25	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	515 - 639	5.4e-13	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	658 - 802	1.9e-12	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44900 AT5G22900
fragaria_vesca	FvH4_3g06341 FvH4_3g23050 FvH4_3g39831 FvH4_6g14510 FvH4_7g14610
malus_domestica	MD02G1295300.v1.1 MD03G1057300.v1.1 MD05G1291400.v1.1 MD10G1267300.v1.1 MD11G1059200.v1.1 MD14G1082300.v1.1
prunus_persica	Prupe.1G346300_v2.0.a1 Prupe.2G029000_v2.0.a1 Prupe.4G074200_v2.0.a1 Prupe.6G047400_v2.0.a1 Prupe.6G047500_v2.0.a1 Prupe.6G047600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0356111 RchiOBHm_Chr1g0356121 RchiOBHm_Chr4g0446581 RchiOBHm_Chr5g0071781
rosa_laevigata	RLG00000005649 RLG00000028106 RLG00000036246 RLG00000036247 RLG00000036248
rosa_multiflora	Rmu_sc0001113.1_g000009 Rmu_sc0002569.1_g000023 Rmu_sc0003229.1_g000013 Rmu_sc0036166.1_g000001 Rmu_ssc0000144.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009380 Rroxscaffold_1G00009410 Rroxscaffold_4G00299800 Rroxscaffold_5G00386970
rosa_rugosa	Rorug04G0372400 Rorug05G0414600 Rorug05G0414700
rosa_samantha	Rh1AG262500 Rh1BG231000 Rh1CG245800 Rh4AG434100 Rh4BG443300 Rh4CG460600 Rh4DG442100 Rh5AG470700 Rh5BG490400 Rh5CG514400 Rh5DG501400 Rh5DG501600 Rh5DG501700
rosa_wichuraiana	Rw1G023190 Rw4G037110 Rw5G043740 Rw5G043750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	2083
Acc36I	ACCTGC	2 cut(s)	278, 1195
AccB7I	CCANNNNNTGG	2 cut(s)	1080, 2106
AccBSI	CCGCTC	3 cut(s)	1003, 1013, 1678
AccI	GTMKAC	1 cut(s)	1154
AccII	CGCG	1 cut(s)	40
AclWI	GGATC	4 cut(s)	851, 2039, 2052, 2179
AcoI	YGGCCR	1 cut(s)	1576
AcsI	RAATTY	4 cut(s)	106, 1118, 1166, 2321
AcuI	CTGAAG	4 cut(s)	1652, 1669, 2283, 2353
AcyI	GRCGYC	1 cut(s)	857
AfaI	GTAC	7 cut(s)	350, 447, 473, 1329, 1640, 1704, 1965
AfeI	AGCGCT	1 cut(s)	924
AfiI	CCNNNNNNNGG	7 cut(s)	640, 661, 1004, 1080, 1842, 2106, 2333
AflII	CTTAAG	1 cut(s)	2134
AgsI	TTSAA	8 cut(s)	14, 90, 1303, 1372, 1381, 1435, 2242, 2385
AjiI	CACGTC	1 cut(s)	1779
AjnI	CCWGG	2 cut(s)	304, 328
AjuI	GAANNNNNNNTTGG	2 cut(s)	2263, 2295
AluBI	AGCT	5 cut(s)	983, 1450, 1583, 2133, 2332
AluI	AGCT	5 cut(s)	983, 1450, 1583, 2133, 2332
Alw21I	GWGCWC	3 cut(s)	752, 1280, 1452
Alw26I	GTCTC	3 cut(s)	723, 1165, 1785
AlwI	GGATC	4 cut(s)	851, 2039, 2052, 2179
AlwNI	CAGNNNCTG	2 cut(s)	55, 283
Ama87I	CYCGRG	3 cut(s)	531, 638, 2083
Aor51HI	AGCGCT	1 cut(s)	924
AoxI	GGCC	8 cut(s)	326, 465, 576, 670, 865, 961, 1576, 2097
ApeKI	GCWGC	3 cut(s)	1245, 1583, 2039
ApoI	RAATTY	4 cut(s)	106, 1118, 1166, 2321
Asp700I	GAANNNNTTC	1 cut(s)	1376
AspLEI	GCGC	2 cut(s)	28, 925
AspS9I	GGNCC	8 cut(s)	43, 302, 577, 643, 962, 995, 1916, 2207
AsuC2I	CCSGG	3 cut(s)	478, 989, 2327
AsuHPI	GGTGA	3 cut(s)	214, 1276, 1550
AsuII	TTCGAA	1 cut(s)	724
AvaI	CYCGRG	3 cut(s)	531, 638, 2083
AvaII	GGWCC	6 cut(s)	43, 302, 643, 995, 1916, 2207
BaeGI	GKGCMC	1 cut(s)	826
BalI	TGGCCA	1 cut(s)	1578
BamHI	GGATCC	1 cut(s)	2044
BanII	GRGCYC	3 cut(s)	1271, 1452, 1538
BarI	GAAGNNNNNNTAC	2 cut(s)	455, 487
BbsI	GAAGAC	1 cut(s)	2007
Bbv12I	GWGCWC	3 cut(s)	752, 1280, 1452
BbvI	GCAGC	3 cut(s)	1232, 1570, 2051
BccI	CCATC	5 cut(s)	54, 412, 1809, 1814, 2029
BceAI	ACGGC	3 cut(s)	575, 898, 1478
BcgI	CGANNNNNNTGC	6 cut(s)	669, 703, 772, 806, 1237, 1271
BciT130I	CCWGG	2 cut(s)	306, 330
BciVI	GTATCC	3 cut(s)	326, 1346, 1741
BcnI	CCSGG	3 cut(s)	478, 989, 2327
BcoDI	GTCTC	3 cut(s)	723, 1165, 1785
BfaI	CTAG	2 cut(s)	668, 1131
BfoI	RGCGCY	2 cut(s)	29, 926
BfrI	CTTAAG	1 cut(s)	2134
BfuAI	ACCTGC	2 cut(s)	278, 1195
BfuI	GTATCC	3 cut(s)	326, 1346, 1741
BglII	AGATCT	1 cut(s)	2378
BisI	GCNGC	4 cut(s)	673, 1246, 1584, 2040
BlpI	GCTNAGC	3 cut(s)	676, 919, 979
BlsI	GCNGC	4 cut(s)	674, 1247, 1585, 2041
Bme1390I	CCNGG	5 cut(s)	306, 330, 478, 989, 2327
Bme18I	GGWCC	6 cut(s)	43, 302, 643, 995, 1916, 2207
BmeT110I	CYCGRG	3 cut(s)	531, 638, 2083
BmgBI	CACGTC	1 cut(s)	1779
BmgT120I	GGNCC	8 cut(s)	43, 302, 577, 643, 962, 995, 1916, 2207
BmiI	GGNNCC	9 cut(s)	44, 487, 529, 644, 997, 1009, 1270, 2046, 2209
BmrFI	CCNGG	5 cut(s)	306, 330, 478, 989, 2327
BmrI	ACTGGG	3 cut(s)	220, 559, 2116
BmsI	GCATC	5 cut(s)	72, 270, 1207, 1501, 2061
BmuI	ACTGGG	3 cut(s)	220, 559, 2116
BpiI	GAAGAC	1 cut(s)	2007
Bpu1102I	GCTNAGC	3 cut(s)	676, 919, 979
Bpu14I	TTCGAA	1 cut(s)	724
BpuEI	CTTGAG	3 cut(s)	154, 230, 1294
BpuMI	CCSGG	3 cut(s)	478, 989, 2327
BsaBI	GATNNNNATC	1 cut(s)	1904
BsaHI	GRCGYC	1 cut(s)	857
BsaJI	CCNNGG	7 cut(s)	298, 305, 477, 532, 637, 1912, 2358
BsaXI	ACNNNNNCTCC	2 cut(s)	1253, 1283
Bsc4I	CCNNNNNNNGG	7 cut(s)	640, 661, 1004, 1080, 1842, 2106, 2333
Bse1I	ACTGG	7 cut(s)	60, 226, 554, 744, 757, 1941, 2111
Bse3DI	GCAATG	2 cut(s)	624, 1361
Bse8I	GATNNNNATC	1 cut(s)	1904
BseBI	CCWGG	2 cut(s)	306, 330
BseDI	CCNNGG	7 cut(s)	298, 305, 477, 532, 637, 1912, 2358
BseGI	GGATG	5 cut(s)	145, 315, 1222, 1516, 2040
BseJI	GATNNNNATC	1 cut(s)	1904
BseLI	CCNNNNNNNGG	7 cut(s)	640, 661, 1004, 1080, 1842, 2106, 2333
BseMI	GCAATG	2 cut(s)	624, 1361
BseMII	CTCAG	4 cut(s)	290, 620, 933, 1458
BseNI	ACTGG	7 cut(s)	60, 226, 554, 744, 757, 1941, 2111
BseRI	GAGGAG	4 cut(s)	626, 644, 676, 1133
BseSI	GKGCMC	1 cut(s)	826
BseXI	GCAGC	3 cut(s)	1232, 1570, 2051
BsgI	GTGCAG	2 cut(s)	1173, 2395
Bsh1236I	CGCG	1 cut(s)	40
BshFI	GGCC	8 cut(s)	328, 467, 578, 672, 867, 963, 1578, 2099
BsiHKAI	GWGCWC	3 cut(s)	752, 1280, 1452
BsiHKCI	CYCGRG	3 cut(s)	531, 638, 2083
BsiSI	CCGG	3 cut(s)	477, 989, 2327
BslFI	GGGAC	8 cut(s)	56, 391, 656, 971, 1239, 1694, 2102, 2360
BslI	CCNNNNNNNGG	7 cut(s)	640, 661, 1004, 1080, 1842, 2106, 2333
BsmAI	GTCTC	3 cut(s)	723, 1165, 1785
BsmBI	CGTCTC	2 cut(s)	1165, 1785
BsmFI	GGGAC	8 cut(s)	56, 391, 656, 971, 1239, 1694, 2102, 2360
BsmI	GAATGC	2 cut(s)	1467, 1614
BsnI	GGCC	8 cut(s)	328, 467, 578, 672, 867, 963, 1578, 2099
BsoBI	CYCGRG	3 cut(s)	531, 638, 2083
Bsp119I	TTCGAA	1 cut(s)	724
Bsp1286I	GDGCHC	6 cut(s)	752, 826, 1271, 1280, 1452, 1538
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	6 cut(s)	843, 1344, 1983, 2044, 2171, 2378
Bsp1720I	GCTNAGC	3 cut(s)	676, 919, 979
BspANI	GGCC	8 cut(s)	328, 467, 578, 672, 867, 963, 1578, 2099
BspCNI	CTCAG	4 cut(s)	289, 619, 932, 1457
BspFNI	CGCG	1 cut(s)	40
BspHI	TCATGA	1 cut(s)	1086
BspLI	GGNNCC	9 cut(s)	44, 487, 529, 644, 997, 1009, 1270, 2046, 2209
BspMI	ACCTGC	2 cut(s)	278, 1195
BspPI	GGATC	4 cut(s)	851, 2039, 2052, 2179
BspQI	GCTCTTC	1 cut(s)	189
BspT104I	TTCGAA	1 cut(s)	724
BspTI	CTTAAG	1 cut(s)	2134
BsrBI	CCGCTC	3 cut(s)	1003, 1013, 1678
BsrDI	GCAATG	2 cut(s)	624, 1361
BsrGI	TGTACA	1 cut(s)	471
BsrI	ACTGG	7 cut(s)	60, 226, 554, 744, 757, 1941, 2111
BssECI	CCNNGG	7 cut(s)	298, 305, 477, 532, 637, 1912, 2358
BssMI	GATC	6 cut(s)	843, 1344, 1983, 2044, 2171, 2378
BssNI	GRCGYC	1 cut(s)	857
Bst2UI	CCWGG	2 cut(s)	306, 330
Bst6I	CTCTTC	3 cut(s)	189, 726, 1302
BstACI	GRCGYC	1 cut(s)	857
BstAFI	CTTAAG	1 cut(s)	2134
BstAPI	GCANNNNNTGC	1 cut(s)	830
BstAUI	TGTACA	1 cut(s)	471
BstBI	TTCGAA	1 cut(s)	724
BstDSI	CCRYGG	1 cut(s)	1912
BstF5I	GGATG	5 cut(s)	145, 315, 1222, 1516, 2040
BstFNI	CGCG	1 cut(s)	40
BstH2I	RGCGCY	2 cut(s)	29, 926
BstHHI	GCGC	2 cut(s)	28, 925
BstKTI	GATC	6 cut(s)	846, 1347, 1986, 2047, 2174, 2381
BstMAI	GTCTC	3 cut(s)	723, 1165, 1785
BstMBI	GATC	6 cut(s)	843, 1344, 1983, 2044, 2171, 2378
BstMWI	GCNNNNNNNGC	2 cut(s)	830, 1275
BstNI	CCWGG	2 cut(s)	306, 330
BstNSI	RCATGY	7 cut(s)	406, 1207, 1353, 1467, 1654, 1755, 2353
BstSCI	CCNGG	5 cut(s)	304, 328, 476, 987, 2325
BstSLI	GKGCMC	1 cut(s)	826
BstUI	CGCG	1 cut(s)	40
BstV1I	GCAGC	3 cut(s)	1232, 1570, 2051
BstV2I	GAAGAC	1 cut(s)	2007
BstX2I	RGATCY	2 cut(s)	2044, 2378
BstYI	RGATCY	2 cut(s)	2044, 2378
BsuI	GTATCC	3 cut(s)	326, 1346, 1741
BsuRI	GGCC	8 cut(s)	328, 467, 578, 672, 867, 963, 1578, 2099
BtgI	CCRYGG	1 cut(s)	1912
BtrI	CACGTC	1 cut(s)	1779
BtsCI	GGATG	5 cut(s)	145, 315, 1222, 1516, 2040
BtsI	GCAGTG	1 cut(s)	1701
BtsIMutI	CAGTG	7 cut(s)	53, 750, 1058, 1693, 1701, 1873, 2223
BveI	ACCTGC	2 cut(s)	278, 1195
CaiI	CAGNNNCTG	2 cut(s)	55, 283
CciI	TCATGA	1 cut(s)	1086
CfoI	GCGC	2 cut(s)	28, 925
Cfr13I	GGNCC	8 cut(s)	43, 302, 577, 643, 962, 995, 1916, 2207
CseI	GACGC	3 cut(s)	145, 496, 865
Csp6I	GTAC	7 cut(s)	349, 446, 472, 1328, 1639, 1703, 1964
CspCI	CAANNNNNGTGG	2 cut(s)	2373, 2408
CviQI	GTAC	7 cut(s)	349, 446, 472, 1328, 1639, 1703, 1964
DpnI	GATC	6 cut(s)	845, 1346, 1985, 2046, 2173, 2380
DpnII	GATC	6 cut(s)	843, 1344, 1983, 2044, 2171, 2378
DraI	TTTAAA	2 cut(s)	1111, 1860
EaeI	YGGCCR	1 cut(s)	1576
Eam1104I	CTCTTC	3 cut(s)	189, 726, 1302
EarI	CTCTTC	3 cut(s)	189, 726, 1302
EciI	GGCGGA	1 cut(s)	780
Ecl136II	GAGCTC	1 cut(s)	1450
Eco147I	AGGCCT	1 cut(s)	467
Eco24I	GRGCYC	3 cut(s)	1271, 1452, 1538
Eco47I	GGWCC	6 cut(s)	43, 302, 643, 995, 1916, 2207
Eco47III	AGCGCT	1 cut(s)	924
Eco53kI	GAGCTC	1 cut(s)	1450
Eco57I	CTGAAG	4 cut(s)	1652, 1669, 2283, 2353
Eco88I	CYCGRG	3 cut(s)	531, 638, 2083
EcoICRI	GAGCTC	1 cut(s)	1450
EcoO109I	RGGNCCY	3 cut(s)	577, 643, 995
EcoRI	GAATTC	1 cut(s)	2321
EcoRII	CCWGG	2 cut(s)	304, 328
EcoT22I	ATGCAT	2 cut(s)	1469, 1743
EcoT38I	GRGCYC	3 cut(s)	1271, 1452, 1538
Esp3I	CGTCTC	2 cut(s)	1165, 1785
FaqI	GGGAC	8 cut(s)	56, 391, 656, 971, 1239, 1694, 2102, 2360
FauI	CCCGC	3 cut(s)	33, 1008, 1671
FauNDI	CATATG	1 cut(s)	323
FblI	GTMKAC	1 cut(s)	1154
Fnu4HI	GCNGC	4 cut(s)	673, 1246, 1584, 2040
FokI	GGATG	5 cut(s)	132, 322, 1229, 1523, 2047
FriOI	GRGCYC	3 cut(s)	1271, 1452, 1538
Fsp4HI	GCNGC	4 cut(s)	673, 1246, 1584, 2040
FspBI	CTAG	2 cut(s)	668, 1131
GlaI	GCGC	2 cut(s)	27, 924
GluI	GCNGC	4 cut(s)	673, 1246, 1584, 2040
HaeII	RGCGCY	2 cut(s)	29, 926
HaeIII	GGCC	8 cut(s)	328, 467, 578, 672, 867, 963, 1578, 2099
HapII	CCGG	3 cut(s)	477, 989, 2327
HgaI	GACGC	3 cut(s)	145, 496, 865
HhaI	GCGC	2 cut(s)	28, 925
Hin1I	GRCGYC	1 cut(s)	857
Hin6I	GCGC	2 cut(s)	26, 923
HinP1I	GCGC	2 cut(s)	26, 923
HincII	GTYRAC	1 cut(s)	384
HindII	GTYRAC	1 cut(s)	384
HinfI	GANTC	6 cut(s)	125, 258, 1090, 1227, 1813, 1900
HpaI	GTTAAC	1 cut(s)	384
HpaII	CCGG	3 cut(s)	477, 989, 2327
HphI	GGTGA	3 cut(s)	214, 1276, 1550
Hpy166II	GTNNAC	9 cut(s)	384, 474, 519, 814, 877, 1155, 1181, 1261, 1916
Hpy188III	TCNNGA	5 cut(s)	365, 901, 1087, 1817, 1874
Hpy8I	GTNNAC	9 cut(s)	384, 474, 519, 814, 877, 1155, 1181, 1261, 1916
Hpy99I	CGWCG	2 cut(s)	512, 1841
HpyAV	CCTTC	9 cut(s)	242, 457, 899, 943, 986, 1565, 1676, 1807, 2144
HpyCH4IV	ACGT	7 cut(s)	33, 179, 369, 380, 1326, 1422, 1778
HpyF10VI	GCNNNNNNNGC	2 cut(s)	830, 1275
HpySE526I	ACGT	7 cut(s)	33, 179, 369, 380, 1326, 1422, 1778
Hsp92I	GRCGYC	1 cut(s)	857
HspAI	GCGC	2 cut(s)	26, 923
KspAI	GTTAAC	1 cut(s)	384
Kzo9I	GATC	6 cut(s)	843, 1344, 1983, 2044, 2171, 2378
LguI	GCTCTTC	1 cut(s)	189
LmnI	GCTCC	7 cut(s)	75, 318, 491, 1013, 1274, 1455, 2329
Lsp1109I	GCAGC	3 cut(s)	1232, 1570, 2051
LweI	GCATC	5 cut(s)	72, 270, 1207, 1501, 2061
MaeI	CTAG	2 cut(s)	668, 1131
MaeII	ACGT	7 cut(s)	33, 179, 369, 380, 1326, 1422, 1778
MaeIII	GTNAC	7 cut(s)	34, 271, 395, 1066, 1199, 1282, 1696
MalI	GATC	6 cut(s)	845, 1346, 1985, 2046, 2173, 2380
MbiI	CCGCTC	3 cut(s)	1003, 1013, 1678
MboI	GATC	6 cut(s)	843, 1344, 1983, 2044, 2171, 2378
MfeI	CAATTG	1 cut(s)	1630
MflI	RGATCY	2 cut(s)	2044, 2378
MhlI	GDGCHC	6 cut(s)	752, 826, 1271, 1280, 1452, 1538
MlsI	TGGCCA	1 cut(s)	1578
MluCI	AATT	9 cut(s)	106, 554, 1118, 1125, 1166, 1501, 1630, 1928, 2321
MluNI	TGGCCA	1 cut(s)	1578
MlyI	GAGTC	3 cut(s)	134, 1221, 1807
MmeI	TCCRAC	4 cut(s)	1547, 1751, 1860, 2245
Mox20I	TGGCCA	1 cut(s)	1578
Mph1103I	ATGCAT	2 cut(s)	1469, 1743
MroXI	GAANNNNTTC	1 cut(s)	1376
MscI	TGGCCA	1 cut(s)	1578
MseI	TTAA	8 cut(s)	383, 546, 942, 1110, 1323, 1859, 2024, 2135
MslI	CAYNNNNRTG	2 cut(s)	278, 1568
Msp20I	TGGCCA	1 cut(s)	1578
MspA1I	CMGCKG	1 cut(s)	2042
MspCI	CTTAAG	1 cut(s)	2134
MspI	CCGG	3 cut(s)	477, 989, 2327
MspR9I	CCNGG	5 cut(s)	306, 330, 478, 989, 2327
MunI	CAATTG	1 cut(s)	1630
Mva1269I	GAATGC	2 cut(s)	1467, 1614
MvaI	CCWGG	2 cut(s)	306, 330
MvnI	CGCG	1 cut(s)	40
MwoI	GCNNNNNNNGC	2 cut(s)	830, 1275
NciI	CCSGG	3 cut(s)	478, 989, 2327
NdeI	CATATG	1 cut(s)	323
NdeII	GATC	6 cut(s)	843, 1344, 1983, 2044, 2171, 2378
NlaIV	GGNNCC	9 cut(s)	44, 487, 529, 644, 997, 1009, 1270, 2046, 2209
NmeAIII	GCCGAG	1 cut(s)	984
NmuCI	GTSAC	4 cut(s)	271, 1199, 1282, 1696
NsiI	ATGCAT	2 cut(s)	1469, 1743
NspI	RCATGY	7 cut(s)	406, 1207, 1353, 1467, 1654, 1755, 2353
NspV	TTCGAA	1 cut(s)	724
PaeI	GCATGC	2 cut(s)	1353, 1467
PaeR7I	CTCGAG	1 cut(s)	2083
PagI	TCATGA	1 cut(s)	1086
PceI	AGGCCT	1 cut(s)	467
PciSI	GCTCTTC	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	1 cut(s)	966
PctI	GAATGC	2 cut(s)	1467, 1614
PdmI	GAANNNNTTC	1 cut(s)	1376
PfeI	GAWTC	3 cut(s)	258, 1090, 1900
PflMI	CCANNNNNTGG	2 cut(s)	1080, 2106
PfoI	TCCNGGA	2 cut(s)	987, 2325
PkrI	GCNGC	4 cut(s)	674, 1247, 1585, 2041
PleI	GAGTC	3 cut(s)	133, 1221, 1807
PpsI	GAGTC	3 cut(s)	133, 1221, 1807
PpuMI	RGGWCCY	2 cut(s)	643, 995
Psp124BI	GAGCTC	1 cut(s)	1452
Psp5II	RGGWCCY	2 cut(s)	643, 995
Psp6I	CCWGG	2 cut(s)	304, 328
PspGI	CCWGG	2 cut(s)	304, 328
PspN4I	GGNNCC	9 cut(s)	44, 487, 529, 644, 997, 1009, 1270, 2046, 2209
PspPI	GGNCC	8 cut(s)	43, 302, 577, 643, 962, 995, 1916, 2207
PspPPI	RGGWCCY	2 cut(s)	643, 995
PspXI	VCTCGAGB	1 cut(s)	2083
PstNI	CAGNNNCTG	2 cut(s)	55, 283
PsuI	RGATCY	2 cut(s)	2044, 2378
RsaI	GTAC	7 cut(s)	350, 447, 473, 1329, 1640, 1704, 1965
RsaNI	GTAC	7 cut(s)	349, 446, 472, 1328, 1639, 1703, 1964
RseI	CAYNNNNRTG	2 cut(s)	278, 1568
SacI	GAGCTC	1 cut(s)	1452
SapI	GCTCTTC	1 cut(s)	189
SaqAI	TTAA	8 cut(s)	383, 546, 942, 1110, 1323, 1859, 2024, 2135
SatI	GCNGC	4 cut(s)	673, 1246, 1584, 2040
Sau3AI	GATC	6 cut(s)	843, 1344, 1983, 2044, 2171, 2378
Sau96I	GGNCC	8 cut(s)	43, 302, 577, 643, 962, 995, 1916, 2207
SchI	GAGTC	3 cut(s)	134, 1221, 1807
ScrFI	CCNGG	5 cut(s)	306, 330, 478, 989, 2327
SduI	GDGCHC	6 cut(s)	752, 826, 1271, 1280, 1452, 1538
SfaNI	GCATC	5 cut(s)	72, 270, 1207, 1501, 2061
Sfr274I	CTCGAG	1 cut(s)	2083
SfuI	TTCGAA	1 cut(s)	724
SinI	GGWCC	6 cut(s)	43, 302, 643, 995, 1916, 2207
SlaI	CTCGAG	1 cut(s)	2083
SmiMI	CAYNNNNRTG	2 cut(s)	278, 1568
SmlI	CTYRAG	5 cut(s)	169, 245, 1273, 2083, 2134
SmoI	CTYRAG	5 cut(s)	169, 245, 1273, 2083, 2134
SphI	GCATGC	2 cut(s)	1353, 1467
Sse9I	AATT	9 cut(s)	106, 554, 1118, 1125, 1166, 1501, 1630, 1928, 2321
SseBI	AGGCCT	1 cut(s)	467
SspMI	CTAG	2 cut(s)	668, 1131
SstI	GAGCTC	1 cut(s)	1452
StuI	AGGCCT	1 cut(s)	467
StyD4I	CCNGG	5 cut(s)	304, 328, 476, 987, 2325
TaiI	ACGT	7 cut(s)	36, 182, 372, 383, 1329, 1425, 1781
TaqI	TCGA	6 cut(s)	192, 724, 1674, 1804, 1875, 2084
TaqII	GACCGA	3 cut(s)	290, 500, 1785
TasI	AATT	9 cut(s)	106, 554, 1118, 1125, 1166, 1501, 1630, 1928, 2321
TatI	WGTACW	3 cut(s)	445, 471, 1963
TauI	GCSGC	1 cut(s)	675
TfiI	GAWTC	3 cut(s)	258, 1090, 1900
Tru1I	TTAA	8 cut(s)	383, 546, 942, 1110, 1323, 1859, 2024, 2135
Tru9I	TTAA	8 cut(s)	383, 546, 942, 1110, 1323, 1859, 2024, 2135
TscAI	CASTG	7 cut(s)	60, 757, 1065, 1693, 1701, 1873, 2223
TseFI	GTSAC	4 cut(s)	271, 1199, 1282, 1696
TseI	GCWGC	3 cut(s)	1245, 1583, 2039
Tsp45I	GTSAC	4 cut(s)	271, 1199, 1282, 1696
TspRI	CASTG	7 cut(s)	60, 757, 1065, 1693, 1701, 1873, 2223
Van91I	CCANNNNNTGG	2 cut(s)	1080, 2106
Vha464I	CTTAAG	1 cut(s)	2134
VpaK11BI	GGWCC	6 cut(s)	43, 302, 643, 995, 1916, 2207
XapI	RAATTY	4 cut(s)	106, 1118, 1166, 2321
XceI	RCATGY	7 cut(s)	406, 1207, 1353, 1467, 1654, 1755, 2353
XhoI	CTCGAG	1 cut(s)	2083
XmiI	GTMKAC	1 cut(s)	1154
XmnI	GAANNNNTTC	1 cut(s)	1376
XspI	CTAG	2 cut(s)	668, 1131
Zsp2I	ATGCAT	2 cut(s)	1469, 1743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.