Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001192

Physical Location & Seq

Genomic Coordinates Reverse (-)

78041293 .. 78042188

Gene Structure 896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036248

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCATGAAGACTTATGCACGCTTGCAATGGACAAGCTTACATCCCTAATAATCCTCTCATTTCATCGAGAATGGTCGATTGATGGGTCCAGTATTGAGTCGGAAGACAACACTATAAGGACACTAAACTTCAGTGTACTCGAAACAGTTCCTTCGTCCGTTGGAATCCTTGTGGATCGGGGACATTTAGGTCGGTCCACCTCTGTTGTATCCACACTAGCAACCATTTCGGTTGCTGTAGTCTTCTTGGGAGGGAAAGATGACAGGGAGGCATTGACCTTTGCCAAAAGAATGGCCAGGGACTCGATGATTAGGTTAACAGTAATCCATTTAGTGGCCATGGAAGAGATGGTGAAGGATGGACCGCAAACGGGGTCTATGGTGGATGAGTATGATATAATCATACTTGGGAGAAGGCATAACGTAGAGTCACCTCAGACAGTAGGGCTTTCGCAATGGAGTGAATTTCAGGAGTTCGGGACAATAGGAGACTTGCTTGCATCACCTCAGACAGTAGGGCTTTCGCAATGGAGTGAATTTCAGGAGTTCGGGACAATAGGAGACTTTCTTGCATCACCTGATTTCGATTGTAAGGCATCCATTCCAGAGATGCCGGGGTCACTCGGTTTGCCGGCGACCCACGATCCCGATCGCGGTACTATAGTGAACCAGATCGGTAACTCCAACGATCCCTTATTTACCCAGTATCAGGTGATTCAGATCTGGTGTTCTTCAAGAATCAAGACTTCGTCAGTCATCATTCAATTAAGTTTACTCAATGTTTTAAAACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

265

Amino Acids

29.06

Weight (kDa)

4.8

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHX17_C	PF23259	76 - 115	1e-05	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44900 AT5G22900
fragaria_vesca	FvH4_3g06341 FvH4_3g23050 FvH4_3g39831 FvH4_6g14510 FvH4_7g14610
malus_domestica	MD02G1295300.v1.1 MD03G1057300.v1.1 MD05G1291400.v1.1 MD10G1267300.v1.1 MD11G1059200.v1.1 MD14G1082300.v1.1
prunus_persica	Prupe.1G346300_v2.0.a1 Prupe.2G029000_v2.0.a1 Prupe.4G074200_v2.0.a1 Prupe.6G047400_v2.0.a1 Prupe.6G047500_v2.0.a1 Prupe.6G047600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0356111 RchiOBHm_Chr1g0356121 RchiOBHm_Chr4g0446581 RchiOBHm_Chr5g0071781
rosa_laevigata	RLG00000005649 RLG00000028106 RLG00000036246 RLG00000036247 RLG00000036248
rosa_multiflora	Rmu_sc0001113.1_g000009 Rmu_sc0002569.1_g000023 Rmu_sc0003229.1_g000013 Rmu_sc0036166.1_g000001 Rmu_ssc0000144.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009380 Rroxscaffold_1G00009410 Rroxscaffold_4G00299800 Rroxscaffold_5G00386970
rosa_rugosa	Rorug04G0372400 Rorug05G0414600 Rorug05G0414700
rosa_samantha	Rh1AG262500 Rh1BG231000 Rh1CG245800 Rh4AG434100 Rh4BG443300 Rh4CG460600 Rh4DG442100 Rh5AG470700 Rh5BG490400 Rh5CG514400 Rh5DG501400 Rh5DG501600 Rh5DG501700
rosa_wichuraiana	Rw1G023190 Rw4G037110 Rw5G043740 Rw5G043750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	189
AccB7I	CCANNNNNTGG	1 cut(s)	334
AccII	CGCG	1 cut(s)	654
AciI	CCGC	2 cut(s)	365, 654
AclWI	GGATC	3 cut(s)	183, 638, 683
AcoI	YGGCCR	2 cut(s)	294, 336
AcsI	RAATTY	2 cut(s)	464, 536
AcuI	CTGAAG	1 cut(s)	115
AfaI	GTAC	2 cut(s)	138, 658
AfiI	CCNNNNNNNGG	4 cut(s)	334, 371, 653, 709
AgsI	TTSAA	2 cut(s)	735, 764
AjnI	CCWGG	1 cut(s)	296
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
Alw26I	GTCTC	2 cut(s)	483, 555
AlwI	GGATC	3 cut(s)	183, 638, 683
AoxI	GGCC	2 cut(s)	294, 336
ApoI	RAATTY	2 cut(s)	464, 536
Asp700I	GAANNNNTTC	1 cut(s)	147
AspS9I	GGNCC	3 cut(s)	87, 195, 362
AsuC2I	CCSGG	1 cut(s)	615
AsuHPI	GGTGA	5 cut(s)	364, 423, 495, 567, 724
AvaII	GGWCC	3 cut(s)	87, 195, 362
BaeI	ACNNNNGTAYC	2 cut(s)	648, 681
BalI	TGGCCA	2 cut(s)	296, 338
BbsI	GAAGAC	3 cut(s)	15, 111, 235
BccI	CCATC	3 cut(s)	77, 343, 353
BcgI	CGANNNNNNTGC	2 cut(s)	210, 244
BciT130I	CCWGG	1 cut(s)	298
BciVI	GTATCC	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	615
BcoDI	GTCTC	2 cut(s)	483, 555
BfaI	CTAG	1 cut(s)	218
BfmI	CTRYAG	2 cut(s)	237, 660
BfuI	GTATCC	1 cut(s)	220
BglII	AGATCT	1 cut(s)	720
Bme1390I	CCNGG	2 cut(s)	298, 615
Bme18I	GGWCC	3 cut(s)	87, 195, 362
BmgT120I	GGNCC	3 cut(s)	87, 195, 362
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	2 cut(s)	298, 615
BmrI	ACTGGG	1 cut(s)	697
BmsI	GCATC	4 cut(s)	509, 581, 600, 605
BmuI	ACTGGG	1 cut(s)	697
BpiI	GAAGAC	3 cut(s)	15, 111, 235
BpuMI	CCSGG	1 cut(s)	615
BsaBI	GATNNNNATC	2 cut(s)	648, 719
BsaJI	CCNNGG	3 cut(s)	297, 339, 614
Bsc4I	CCNNNNNNNGG	4 cut(s)	334, 371, 653, 709
Bse118I	RCCGGY	1 cut(s)	631
Bse1I	ACTGG	2 cut(s)	90, 703
Bse3DI	GCAATG	3 cut(s)	33, 461, 533
Bse8I	GATNNNNATC	2 cut(s)	648, 719
BseBI	CCWGG	1 cut(s)	298
BseDI	CCNNGG	3 cut(s)	297, 339, 614
BseGI	GGATG	4 cut(s)	41, 364, 391, 596
BseJI	GATNNNNATC	2 cut(s)	648, 719
BseLI	CCNNNNNNNGG	4 cut(s)	334, 371, 653, 709
BseMI	GCAATG	3 cut(s)	33, 461, 533
BseMII	CTCAG	2 cut(s)	449, 521
BseNI	ACTGG	2 cut(s)	90, 703
Bsh1236I	CGCG	1 cut(s)	654
Bsh1285I	CGRYCG	1 cut(s)	652
BshFI	GGCC	2 cut(s)	296, 338
BsiEI	CGRYCG	1 cut(s)	652
BsiSI	CCGG	2 cut(s)	614, 632
BslFI	GGGAC	4 cut(s)	195, 314, 493, 565
BslI	CCNNNNNNNGG	4 cut(s)	334, 371, 653, 709
BsmAI	GTCTC	2 cut(s)	483, 555
BsmFI	GGGAC	4 cut(s)	195, 314, 493, 565
BsnI	GGCC	2 cut(s)	296, 338
Bsp143I	GATC	6 cut(s)	175, 643, 649, 672, 688, 720
Bsp19I	CCATGG	1 cut(s)	339
BspACI	CCGC	2 cut(s)	365, 654
BspANI	GGCC	2 cut(s)	296, 338
BspCNI	CTCAG	2 cut(s)	448, 520
BspFNI	CGCG	1 cut(s)	654
BspLI	GGNNCC	1 cut(s)	88
BspPI	GGATC	3 cut(s)	183, 638, 683
BsrDI	GCAATG	3 cut(s)	33, 461, 533
BsrFI	RCCGGY	1 cut(s)	631
BsrI	ACTGG	2 cut(s)	90, 703
BssAI	RCCGGY	1 cut(s)	631
BssECI	CCNNGG	3 cut(s)	297, 339, 614
BssMI	GATC	6 cut(s)	175, 643, 649, 672, 688, 720
BssT1I	CCWWGG	1 cut(s)	339
Bst2UI	CCWGG	1 cut(s)	298
Bst4CI	ACNGT	4 cut(s)	148, 322, 442, 514
Bst6I	CTCTTC	1 cut(s)	339
BstC8I	GCNNGC	4 cut(s)	20, 24, 498, 633
BstDEI	CTNAG	2 cut(s)	435, 507
BstDSI	CCRYGG	1 cut(s)	339
BstF5I	GGATG	4 cut(s)	41, 364, 391, 596
BstFNI	CGCG	1 cut(s)	654
BstKTI	GATC	6 cut(s)	178, 646, 652, 675, 691, 723
BstMAI	GTCTC	2 cut(s)	483, 555
BstMBI	GATC	6 cut(s)	175, 643, 649, 672, 688, 720
BstMCI	CGRYCG	1 cut(s)	652
BstNI	CCWGG	1 cut(s)	298
BstSCI	CCNGG	2 cut(s)	296, 613
BstSFI	CTRYAG	2 cut(s)	237, 660
BstUI	CGCG	1 cut(s)	654
BstV2I	GAAGAC	3 cut(s)	15, 111, 235
BstX2I	RGATCY	1 cut(s)	720
BstXI	CCANNNNNNTGG	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	720
BsuI	GTATCC	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	296, 338
BtgI	CCRYGG	1 cut(s)	339
BtsCI	GGATG	4 cut(s)	41, 364, 391, 596
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	4 cut(s)	20, 24, 498, 633
Cfr10I	RCCGGY	1 cut(s)	631
Cfr13I	GGNCC	3 cut(s)	87, 195, 362
Csp6I	GTAC	2 cut(s)	137, 657
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviAII	CATG	2 cut(s)	5, 340
CviJI	RGCY	5 cut(s)	37, 296, 338, 448, 520
CviKI_1	RGCY	5 cut(s)	37, 296, 338, 448, 520
CviQI	GTAC	2 cut(s)	137, 657
DdeI	CTNAG	2 cut(s)	435, 507
DpnI	GATC	6 cut(s)	177, 645, 651, 674, 690, 722
DpnII	GATC	6 cut(s)	175, 643, 649, 672, 688, 720
DraI	TTTAAA	1 cut(s)	786
DrdI	GACNNNNNNGTC	1 cut(s)	189
DseDI	GACNNNNNNGTC	1 cut(s)	189
EaeI	YGGCCR	2 cut(s)	294, 336
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	339
Eco47I	GGWCC	3 cut(s)	87, 195, 362
Eco57I	CTGAAG	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	296
EcoT14I	CCWWGG	1 cut(s)	339
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	2 cut(s)	8, 343
FaqI	GGGAC	4 cut(s)	195, 314, 493, 565
FatI	CATG	2 cut(s)	4, 339
FokI	GGATG	4 cut(s)	28, 371, 398, 583
FspBI	CTAG	1 cut(s)	218
HaeIII	GGCC	2 cut(s)	296, 338
HapII	CCGG	2 cut(s)	614, 632
Hin1II	CATG	2 cut(s)	8, 343
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	6 cut(s)	98, 165, 302, 428, 715, 738
HpaI	GTTAAC	1 cut(s)	318
HpaII	CCGG	2 cut(s)	614, 632
HphI	GGTGA	5 cut(s)	364, 423, 495, 567, 724
Hpy166II	GTNNAC	5 cut(s)	137, 198, 318, 667, 773
Hpy188I	TCNGA	4 cut(s)	103, 438, 510, 720
Hpy188III	TCNNGA	9 cut(s)	68, 470, 478, 542, 550, 605, 647, 735, 742
Hpy8I	GTNNAC	5 cut(s)	137, 198, 318, 667, 773
HpyAV	CCTTC	3 cut(s)	162, 349, 408
HpyCH4III	ACNGT	4 cut(s)	148, 322, 442, 514
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	5 cut(s)	4, 18, 26, 500, 572
HpyF3I	CTNAG	2 cut(s)	435, 507
HpySE526I	ACGT	1 cut(s)	423
Hsp92II	CATG	2 cut(s)	8, 343
KroI	GCCGGC	1 cut(s)	631
KroNI	GCCGGC	1 cut(s)	633
KspAI	GTTAAC	1 cut(s)	318
Kzo9I	GATC	6 cut(s)	175, 643, 649, 672, 688, 720
LweI	GCATC	4 cut(s)	509, 581, 600, 605
MaeI	CTAG	1 cut(s)	218
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	3 cut(s)	429, 618, 677
MalI	GATC	6 cut(s)	177, 645, 651, 674, 690, 722
MboI	GATC	6 cut(s)	175, 643, 649, 672, 688, 720
MboII	GAAGA	5 cut(s)	20, 116, 235, 356, 723
MflI	RGATCY	1 cut(s)	720
MlsI	TGGCCA	2 cut(s)	296, 338
MluCI	AATT	3 cut(s)	464, 536, 764
MluNI	TGGCCA	2 cut(s)	296, 338
MlyI	GAGTC	3 cut(s)	107, 296, 437
MmeI	TCCRAC	3 cut(s)	81, 142, 708
MnlI	CCTC	6 cut(s)	65, 211, 245, 262, 444, 516
Mox20I	TGGCCA	2 cut(s)	296, 338
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	631
MroXI	GAANNNNTTC	1 cut(s)	147
MscI	TGGCCA	2 cut(s)	296, 338
MseI	TTAA	3 cut(s)	317, 767, 785
Msp20I	TGGCCA	2 cut(s)	296, 338
MspI	CCGG	2 cut(s)	614, 632
MspR9I	CCNGG	2 cut(s)	298, 615
MvaI	CCWGG	1 cut(s)	298
MvnI	CGCG	1 cut(s)	654
NaeI	GCCGGC	1 cut(s)	633
NciI	CCSGG	1 cut(s)	615
NcoI	CCATGG	1 cut(s)	339
NdeII	GATC	6 cut(s)	175, 643, 649, 672, 688, 720
NgoMIV	GCCGGC	1 cut(s)	631
NlaIII	CATG	2 cut(s)	8, 343
NlaIV	GGNNCC	1 cut(s)	88
NmuCI	GTSAC	2 cut(s)	429, 618
NsiI	ATGCAT	1 cut(s)	6
PdiI	GCCGGC	1 cut(s)	633
PdmI	GAANNNNTTC	1 cut(s)	147
PfeI	GAWTC	3 cut(s)	165, 715, 738
PflFI	GACNNNGTC	1 cut(s)	748
PflMI	CCANNNNNTGG	1 cut(s)	334
Ple19I	CGATCG	1 cut(s)	652
PleI	GAGTC	3 cut(s)	106, 296, 436
PpsI	GAGTC	3 cut(s)	106, 296, 436
Psp6I	CCWGG	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	3 cut(s)	87, 195, 362
PsuI	RGATCY	1 cut(s)	720
PsyI	GACNNNGTC	1 cut(s)	748
PvuI	CGATCG	1 cut(s)	652
RsaI	GTAC	2 cut(s)	138, 658
RsaNI	GTAC	2 cut(s)	137, 657
SaqAI	TTAA	3 cut(s)	317, 767, 785
Sau3AI	GATC	6 cut(s)	175, 643, 649, 672, 688, 720
Sau96I	GGNCC	3 cut(s)	87, 195, 362
SchI	GAGTC	3 cut(s)	107, 296, 437
ScrFI	CCNGG	2 cut(s)	298, 615
SfaNI	GCATC	4 cut(s)	509, 581, 600, 605
SfcI	CTRYAG	2 cut(s)	237, 660
SinI	GGWCC	3 cut(s)	87, 195, 362
Sse9I	AATT	3 cut(s)	464, 536, 764
SsiI	CCGC	2 cut(s)	365, 654
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	2 cut(s)	296, 613
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	4 cut(s)	148, 322, 442, 514
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	5 cut(s)	67, 77, 141, 305, 585
TaqII	GACCGA	1 cut(s)	183
TasI	AATT	3 cut(s)	464, 536, 764
TatI	WGTACW	1 cut(s)	136
TfiI	GAWTC	3 cut(s)	165, 715, 738
Tru1I	TTAA	3 cut(s)	317, 767, 785
Tru9I	TTAA	3 cut(s)	317, 767, 785
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	2 cut(s)	429, 618
Tsp45I	GTSAC	2 cut(s)	429, 618
TspDTI	ATGAA	2 cut(s)	21, 53
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	1 cut(s)	139
Tth111I	GACNNNGTC	1 cut(s)	748
Van91I	CCANNNNNTGG	1 cut(s)	334
VpaK11BI	GGWCC	3 cut(s)	87, 195, 362
XapI	RAATTY	2 cut(s)	464, 536
XcmI	CCANNNNNNNNNTGG	1 cut(s)	346
XmnI	GAANNNNTTC	1 cut(s)	147
XspI	CTAG	1 cut(s)	218
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.