Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001192

Physical Location & Seq

Genomic Coordinates Reverse (-)

54369035 .. 54369508

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0372400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGGTCATTGGAGGCTGGGAATCCGGCAGGAATTCATCACCAAGACTCGGTGCGGGTGACTTTGGGTTCGGCAGGGCTTGCAGCTTTGCAAGCAGACCGATGGTACGTAGTGGGGCGTCTTCTCAGCTCTAAGGCCAAGTTCCCAGGGTTCAAAGTGACTATTGCTACAATATGGCGTATCAAGTTTGGTTTGACTATACAAGATGCAGGAGATAGATTTGTGTTTCAATTTGAGTGCGCAGCTGAATGTAATAAGATATTGCATGGAGGACCATGGTTCTATAGGAAAACTATGTTGGTGCTCGGAGAGTATGATGGAATAGGATCAGTGGCGGCTGTCCCTTTGAATTTTTTGGAAACGTGGATGGTGATCAAAAGGCTACCAGTAGGGCTTTGCAATAAGGCGACGCTGCATCTAGTCGGTGCGACTCTTGGCGGGGTTATTCGCTTCGACCAAACAGCCCTATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

157

Amino Acids

17.11

Weight (kDa)

9.33

Isoelectric Point (pI)

32.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	34 - 102	1.5e-08	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44900 AT5G22900
fragaria_vesca	FvH4_3g06341 FvH4_3g23050 FvH4_3g39831 FvH4_6g14510 FvH4_7g14610
malus_domestica	MD02G1295300.v1.1 MD03G1057300.v1.1 MD05G1291400.v1.1 MD10G1267300.v1.1 MD11G1059200.v1.1 MD14G1082300.v1.1
prunus_persica	Prupe.1G346300_v2.0.a1 Prupe.2G029000_v2.0.a1 Prupe.4G074200_v2.0.a1 Prupe.6G047400_v2.0.a1 Prupe.6G047500_v2.0.a1 Prupe.6G047600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0356111 RchiOBHm_Chr1g0356121 RchiOBHm_Chr4g0446581 RchiOBHm_Chr5g0071781
rosa_laevigata	RLG00000005649 RLG00000028106 RLG00000036246 RLG00000036247 RLG00000036248
rosa_multiflora	Rmu_sc0001113.1_g000009 Rmu_sc0002569.1_g000023 Rmu_sc0003229.1_g000013 Rmu_sc0036166.1_g000001 Rmu_ssc0000144.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009380 Rroxscaffold_1G00009410 Rroxscaffold_4G00299800 Rroxscaffold_5G00386970
rosa_rugosa	Rorug04G0372400 Rorug05G0414600 Rorug05G0414700
rosa_samantha	Rh1AG262500 Rh1BG231000 Rh1CG245800 Rh4AG434100 Rh4BG443300 Rh4CG460600 Rh4DG442100 Rh5AG470700 Rh5BG490400 Rh5CG514400 Rh5DG501400 Rh5DG501600 Rh5DG501700
rosa_wichuraiana	Rw1G023190 Rw4G037110 Rw5G043740 Rw5G043750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	241
AciI	CCGC	3 cut(s)	55, 335, 438
AclWI	GGATC	1 cut(s)	334
AcsI	RAATTY	2 cut(s)	33, 349
AcyI	GRCGYC	1 cut(s)	118
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	3 cut(s)	154, 230, 349
AjnI	CCWGG	1 cut(s)	145
AjuI	GAANNNNNNNTTGG	2 cut(s)	281, 313
AluBI	AGCT	3 cut(s)	86, 129, 245
AluI	AGCT	3 cut(s)	86, 129, 245
Alw21I	GWGCWC	1 cut(s)	306
AlwI	GGATC	1 cut(s)	334
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	3 cut(s)	83, 242, 412
ApoI	RAATTY	2 cut(s)	33, 349
ArsI	GACNNNNNNTTYG	2 cut(s)	52, 84
AspLEI	GCGC	1 cut(s)	242
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	3 cut(s)	32, 70, 382
AvaII	GGWCC	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	3 cut(s)	95, 254, 399
BccI	CCATC	3 cut(s)	96, 311, 361
BciT130I	CCWGG	1 cut(s)	147
BclI	TGATCA	1 cut(s)	372
BfaI	CTAG	1 cut(s)	419
BfmI	CTRYAG	1 cut(s)	283
BisI	GCNGC	4 cut(s)	84, 243, 336, 413
BlsI	GCNGC	4 cut(s)	85, 244, 337, 414
Bme1390I	CCNGG	1 cut(s)	147
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	2 cut(s)	196, 424
BpiI	GAAGAC	1 cut(s)	113
BsaAI	YACGTR	1 cut(s)	109
BsaBI	GATNNNNATC	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	118
BsaJI	CCNNGG	3 cut(s)	145, 146, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse1I	ACTGG	1 cut(s)	386
Bse8I	GATNNNNATC	1 cut(s)	371
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	3 cut(s)	145, 146, 275
BseGI	GGATG	1 cut(s)	372
BseJI	GATNNNNATC	1 cut(s)	371
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	139
BseNI	ACTGG	1 cut(s)	386
BseXI	GCAGC	3 cut(s)	95, 254, 399
BseYI	CCCAGC	1 cut(s)	17
BshFI	GGCC	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	2 cut(s)	326, 372
Bsp19I	CCATGG	1 cut(s)	275
BspACI	CCGC	3 cut(s)	55, 335, 438
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	138
BspPI	GGATC	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	386
BssECI	CCNNGG	3 cut(s)	145, 146, 275
BssMI	GATC	2 cut(s)	326, 372
BssNI	GRCGYC	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	147
BstACI	GRCGYC	1 cut(s)	118
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstBAI	YACGTR	1 cut(s)	109
BstC8I	GCNNGC	2 cut(s)	81, 93
BstDEI	CTNAG	2 cut(s)	125, 132
BstDSI	CCRYGG	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	372
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	2 cut(s)	329, 375
BstMBI	GATC	2 cut(s)	326, 372
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 92
BstNI	CCWGG	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	283
BstSNI	TACGTA	1 cut(s)	109
BstV1I	GCAGC	3 cut(s)	95, 254, 399
BstV2I	GAAGAC	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	137
BtgI	CCRYGG	1 cut(s)	275
BtsCI	GGATG	1 cut(s)	372
BtsIMutI	CAGTG	1 cut(s)	336
Cac8I	GCNNGC	2 cut(s)	81, 93
CfoI	GCGC	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	272
CseI	GACGC	2 cut(s)	107, 418
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	2 cut(s)	266, 276
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	2 cut(s)	125, 132
DpnI	GATC	2 cut(s)	328, 374
DpnII	GATC	2 cut(s)	326, 372
Eco105I	TACGTA	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	272
EcoRI	GAATTC	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	275
ErhI	CCWWGG	1 cut(s)	275
FaeI	CATG	2 cut(s)	269, 279
FaiI	YATR	7 cut(s)	175, 200, 267, 277, 285, 296, 315
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	2 cut(s)	265, 275
FauI	CCCGC	2 cut(s)	48, 431
FbaI	TGATCA	1 cut(s)	372
Fnu4HI	GCNGC	4 cut(s)	84, 243, 336, 413
FokI	GGATG	1 cut(s)	379
Fsp4HI	GCNGC	4 cut(s)	84, 243, 336, 413
FspBI	CTAG	1 cut(s)	419
FspI	TGCGCA	1 cut(s)	241
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	4 cut(s)	84, 243, 336, 413
GsaI	CCCAGC	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	1 cut(s)	26
HgaI	GACGC	2 cut(s)	107, 418
HhaI	GCGC	1 cut(s)	242
Hin1I	GRCGYC	1 cut(s)	118
Hin1II	CATG	2 cut(s)	269, 279
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HinfI	GANTC	3 cut(s)	22, 47, 430
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	3 cut(s)	32, 70, 382
Hpy188I	TCNGA	2 cut(s)	308, 473
Hpy99I	CGWCG	1 cut(s)	412
HpyCH4IV	ACGT	2 cut(s)	108, 362
HpyCH4V	TGCA	6 cut(s)	83, 91, 209, 265, 399, 415
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 92
HpyF3I	CTNAG	2 cut(s)	125, 132
HpySE526I	ACGT	2 cut(s)	108, 362
Hsp92I	GRCGYC	1 cut(s)	118
Hsp92II	CATG	2 cut(s)	269, 279
HspAI	GCGC	1 cut(s)	240
Ksp22I	TGATCA	1 cut(s)	372
Kzo9I	GATC	2 cut(s)	326, 372
LpnPI	CCDG	8 cut(s)	3, 15, 39, 60, 132, 159, 195, 399
Lsp1109I	GCAGC	3 cut(s)	95, 254, 399
LweI	GCATC	2 cut(s)	196, 424
MaeI	CTAG	1 cut(s)	419
MaeII	ACGT	2 cut(s)	108, 362
MaeIII	GTNAC	2 cut(s)	58, 157
MalI	GATC	2 cut(s)	328, 374
MboI	GATC	2 cut(s)	326, 372
MboII	GAAGA	1 cut(s)	113
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	3 cut(s)	33, 230, 349
MlyI	GAGTC	2 cut(s)	41, 424
MnlI	CCTC	2 cut(s)	7, 263
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	2 cut(s)	80, 92
NcoI	CCATGG	1 cut(s)	275
NdeII	GATC	2 cut(s)	326, 372
NlaIII	CATG	2 cut(s)	269, 279
NmuCI	GTSAC	2 cut(s)	58, 157
NsbI	TGCGCA	1 cut(s)	241
PasI	CCCWGGG	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	22
PkrI	GCNGC	4 cut(s)	85, 244, 337, 414
PleI	GAGTC	2 cut(s)	41, 424
PpsI	GAGTC	2 cut(s)	41, 424
Ppu21I	YACGTR	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	145
PspFI	CCCAGC	1 cut(s)	17
PspGI	CCWGG	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SatI	GCNGC	4 cut(s)	84, 243, 336, 413
Sau3AI	GATC	2 cut(s)	326, 372
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	2 cut(s)	41, 424
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	5 cut(s)	88, 111, 131, 247, 365
SfaNI	GCATC	2 cut(s)	196, 424
SfcI	CTRYAG	1 cut(s)	283
SinI	GGWCC	1 cut(s)	272
SnaBI	TACGTA	1 cut(s)	109
Sse9I	AATT	3 cut(s)	33, 230, 349
SsiI	CCGC	3 cut(s)	55, 335, 438
SspMI	CTAG	1 cut(s)	419
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	275
TaiI	ACGT	2 cut(s)	111, 365
TaqI	TCGA	1 cut(s)	453
TaqII	GACCGA	1 cut(s)	114
TasI	AATT	3 cut(s)	33, 230, 349
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	1 cut(s)	22
TscAI	CASTG	1 cut(s)	336
TseFI	GTSAC	2 cut(s)	58, 157
TseI	GCWGC	3 cut(s)	83, 242, 412
Tsp45I	GTSAC	2 cut(s)	58, 157
TspDTI	ATGAA	1 cut(s)	26
TspRI	CASTG	1 cut(s)	336
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	2 cut(s)	33, 349
XspI	CTAG	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.