Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001192

Physical Location & Seq

Genomic Coordinates Reverse (-)

5031549 .. 5034609

Gene Structure 3061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1059200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2373 bp

ATGGCGACTCATACGGCGACCAACCTAACCAGTTCGGAAACGAGAGTTACTGAGTGTACCGAGTTCCCTCCTAACGTTCATTCGCCAGGCCTGTACTCGGGAAACTACACAGATAGGGATCATCAGATGTATACCCTTCCAAATCTGGAGATACAGATGGTTTTAATTTTTATCATCACCCAAGCCTTCTATTACGTTTTTCGCTATTTTGGAGTTCCAAGGTTCAGCTGCCAAATTATAACCGGCATAATCCTCAGCCCCACACTCCTTGGGCACTACAATTTCTTCAAGAACTTCTTGTTTAATGTAAACAGCCAAGAATCACTTGGTCTTCTGGCTGAGTTGGGTTATGGGCTCTTTATGTTTCTAGTTGGAGTGAAAATGGATTTGGGAATGATAAAAAGGACAGGGAAAAAAGGCTTGTACACTGGTGTTGCATGCGTCGTGGCGCCTTTGCTAGTCAGTATGGCTGTCCAAGCCACGCTCAACGCTAAAATGTTCAGCCTAACCCGTCACGAACAGTTCGAACTTCCATTCGTAACTCAGTTACATTCAATTACTCCATTTCCGGTTGTGGCTTGCCTTCTTGAGGAGCTGAAAATTCTGAATTCGGAGATTGGTCGATTAGGCATGTCTGCCGCATTAGTCAGTGACATGATCAGTGTGTTCCTTCAATTTATGGGGCAGGTTGCTAGAATTGGAAAAGTGTCTATTGAACCAAGGGACATGATAACAGCCATAGCAATAGCCGTTGGCTATGTTACCATTGTTATTATCATAATTCGACCAATAATGTTGTGGATGATCAGGCAGACCCCGGAAAATAGGCCTGTCAAGAAAGGCTATGTCAATATGACCATCATCCTTGTGCTCCTGTCCGGCCTGTTTTCGCATCTTTATGGTCAGGGTTTTTATTTCGGCCCTTTTATATTTGGTTTGGCTGTTCCAGCCGGACCACCATTGGGATCAGCTATTGAAGAAAAGCTCAACATGTTCGTTTCTGATGTGTTGCTTCCCATCTTTGTGACTACAAGTGCTATGAGGACAAATTTTTGGTCCCTTGACCATTTCTTAACTGACCAATTTGCACAAATCAATGGAATCCTCATGCTCGTCGCTCTCGTGACCAAATTCATAGCCAGTCTGACTGTTCCCTTGTACTGCAAAATGCCCTTCGTTGATGCATTATCAATTGCTTTCATTTTGTCCTGCAAAGGCATTGTCAACCTTGCCTCCTATACCGACTTCAGAGACAGTCAGGACATCAGTGAATCAGCATTTGCTTTGGCGATGACTAGCGTCATCGTGACTGCGACTCTTATGCCCATCCTGGTGAATTTCTTGTATGATCCTTCAAGAAAATACGCCGGCTACCAGAGAAGGAATATGATGCATTCGAAACCCAATTCTGAGCTCAGAATACTTGCTTGCATTCATAGGTCAGCTAACATGCCTGCACTCATCAATCTACTTGATGCAGCATGTCCATCTAGAGACAACCCGATTGCTGTTTATGTTCTTCATCTCATTGAATTAGTGGGCAGAGCCTCTCCTATTTTTATCTCCCACCAAATGCAGAAAAAATCTACTTCCAATACTTCATACTCGGACAATGTCATTCTTTACTTCAATCACTTTCTTAGAGAAAATCTTGGTGCTGTATCTTTAAGCATCTTCACTGCAATCTCTCCACCAAAATACATGCATGAAGACATATGCACCCTAGCATTGGACAAACTTTGTTCACTAATTGTGCTCCCATTTCACCGAAGATGGTCAATGGACGGGTCAGTGGAATCAGAAGACAATAGCGTAAGGAACCTGAATTGCAGTGTCTTAGAAAGAGCCCCATGTTCAGTTGGAATCCTTGTAGACCGCGGCCATTTAGGACAGTCCACCTCCATTGTTGCACCCGAGTCATCCTTCTCTGTGGCTATAATCTTCTTGGGAGGGAAAGACGACAGGGAAGCATTGTCATTTGCCAAGAGAATGGCAAACGACTCCACAATAAGCCTAACAGTGATCCGACTTGTTGCCGCAAACTCTGTAGCTTGTACGGATTGGGATAGTGTACTTGATACCGAGGAAATGAAGGGCTTTAGATATAACGATGTGGGTGAGGGTTTTGTGATATACTTGGAGGAGGTTGTGAAAGATGGGCCTCAGACGGCTTTAGTGCTTCGGTCTATGGTGGATGAGTTTGACCTAATTATAGTTGGGAGAAGGCATATGGTGCAGTCCCAGCAGACGGCAGGGCTTTCGGAATGGAGTGAATTTCCGGAGCTAGGGACTCTAGGTGACTTGCTTGCATCACCAGACATCAATTGTAGAGCTTCAATTCTGGTGATACAGCAACAAAGGATGATGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

791

Amino Acids

87.78

Weight (kDa)

6.2

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	62 - 445	7.3e-30	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	503 - 631	7.9e-15	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	641 - 786	4.9e-09	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44900 AT5G22900
fragaria_vesca	FvH4_3g06341 FvH4_3g23050 FvH4_3g39831 FvH4_6g14510 FvH4_7g14610
malus_domestica	MD02G1295300.v1.1 MD03G1057300.v1.1 MD05G1291400.v1.1 MD10G1267300.v1.1 MD11G1059200.v1.1 MD14G1082300.v1.1
prunus_persica	Prupe.1G346300_v2.0.a1 Prupe.2G029000_v2.0.a1 Prupe.4G074200_v2.0.a1 Prupe.6G047400_v2.0.a1 Prupe.6G047500_v2.0.a1 Prupe.6G047600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0356111 RchiOBHm_Chr1g0356121 RchiOBHm_Chr4g0446581 RchiOBHm_Chr5g0071781
rosa_laevigata	RLG00000005649 RLG00000028106 RLG00000036246 RLG00000036247 RLG00000036248
rosa_multiflora	Rmu_sc0001113.1_g000009 Rmu_sc0002569.1_g000023 Rmu_sc0003229.1_g000013 Rmu_sc0036166.1_g000001 Rmu_ssc0000144.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009380 Rroxscaffold_1G00009410 Rroxscaffold_4G00299800 Rroxscaffold_5G00386970
rosa_rugosa	Rorug04G0372400 Rorug05G0414600 Rorug05G0414700
rosa_samantha	Rh1AG262500 Rh1BG231000 Rh1CG245800 Rh4AG434100 Rh4BG443300 Rh4CG460600 Rh4DG442100 Rh5AG470700 Rh5BG490400 Rh5CG514400 Rh5DG501400 Rh5DG501600 Rh5DG501700
rosa_wichuraiana	Rw1G023190 Rw4G037110 Rw5G043740 Rw5G043750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
Acc36I	ACCTGC	1 cut(s)	676
AccB1I	GGYRCC	1 cut(s)	448
AccI	GTMKAC	2 cut(s)	131, 1872
AccII	CGCG	1 cut(s)	1878
AccIII	TCCGGA	1 cut(s)	2278
AciI	CCGC	4 cut(s)	639, 1876, 1878, 2037
AclI	AACGTT	1 cut(s)	75
AclWI	GGATC	4 cut(s)	126, 973, 1343, 2017
AcoI	YGGCCR	1 cut(s)	1879
AcsI	RAATTY	6 cut(s)	600, 607, 1048, 1130, 1336, 2273
AcuI	CTGAAG	1 cut(s)	1231
AcyI	GRCGYC	1 cut(s)	449
AfaI	GTAC	6 cut(s)	58, 95, 425, 1160, 2056, 2073
AfiI	CCNNNNNNNGG	6 cut(s)	97, 589, 962, 1729, 2248, 2285
AflIII	ACRYGT	1 cut(s)	990
AgsI	TTSAA	9 cut(s)	289, 555, 674, 716, 977, 1356, 1532, 1630, 2337
AjnI	CCWGG	2 cut(s)	85, 1329
AjuI	GAANNNNNNNTTGG	2 cut(s)	371, 403
AluBI	AGCT	9 cut(s)	228, 595, 971, 985, 1414, 1445, 2051, 2284, 2333
AluI	AGCT	9 cut(s)	228, 595, 971, 985, 1414, 1445, 2051, 2284, 2333
Alw21I	GWGCWC	3 cut(s)	873, 1416, 1758
Alw26I	GTCTC	2 cut(s)	1245, 1488
AlwI	GGATC	4 cut(s)	126, 973, 1343, 2017
Ama87I	CYCGRG	2 cut(s)	97, 1913
Aor13HI	TCCGGA	1 cut(s)	2278
AoxI	GGCC	6 cut(s)	88, 827, 880, 919, 1879, 2159
ApeKI	GCWGC	2 cut(s)	228, 1478
ApoI	RAATTY	6 cut(s)	600, 607, 1048, 1130, 1336, 2273
ArsI	GACNNNNNNTTYG	4 cut(s)	1040, 1072, 1206, 1238
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	4 cut(s)	920, 953, 1056, 2159
AsuC2I	CCSGG	1 cut(s)	818
AsuHPI	GGTGA	7 cut(s)	169, 1345, 1757, 2129, 2304, 2309, 2356
AsuII	TTCGAA	2 cut(s)	525, 1397
AvaI	CYCGRG	2 cut(s)	97, 1913
AvaII	GGWCC	2 cut(s)	953, 1056
BaeGI	GKGCMC	1 cut(s)	276
BanI	GGYRCC	1 cut(s)	448
BanII	GRGCYC	3 cut(s)	357, 1416, 1849
BauI	CACGAG	1 cut(s)	1121
BbsI	GAAGAC	3 cut(s)	323, 1716, 1809
Bbv12I	GWGCWC	3 cut(s)	873, 1416, 1758
BbvCI	CCTCAGC	1 cut(s)	254
BbvI	GCAGC	2 cut(s)	215, 1490
BccI	CCATC	7 cut(s)	151, 866, 1025, 1334, 1495, 1767, 2150
BceAI	ACGGC	4 cut(s)	30, 734, 2184, 2265
BcgI	CGANNNNNNTGC	4 cut(s)	1303, 1337, 2241, 2275
BciT130I	CCWGG	2 cut(s)	87, 1331
BclI	TGATCA	2 cut(s)	657, 804
BcnI	CCSGG	1 cut(s)	818
BcoDI	GTCTC	2 cut(s)	1245, 1488
BfaI	CTAG	8 cut(s)	368, 458, 693, 1296, 1491, 1724, 2285, 2294
BfmI	CTRYAG	1 cut(s)	2046
BfoI	RGCGCY	1 cut(s)	452
BfuAI	ACCTGC	1 cut(s)	676
BisI	GCNGC	5 cut(s)	229, 639, 1479, 1879, 2037
BlsI	GCNGC	5 cut(s)	230, 640, 1480, 1880, 2038
Bme1390I	CCNGG	3 cut(s)	87, 818, 1331
Bme18I	GGWCC	2 cut(s)	953, 1056
BmeT110I	CYCGRG	2 cut(s)	97, 1913
BmgT120I	GGNCC	4 cut(s)	920, 953, 1056, 2159
BmiI	GGNNCC	3 cut(s)	450, 1058, 1820
BmrFI	CCNGG	3 cut(s)	87, 818, 1331
BmsI	GCATC	6 cut(s)	901, 1171, 1380, 1465, 1680, 2318
BoxI	GACNNNNGTC	1 cut(s)	1298
BpiI	GAAGAC	3 cut(s)	323, 1716, 1809
BpmI	CTGGAG	1 cut(s)	167
Bpu10I	CCTNAGC	1 cut(s)	254
Bpu14I	TTCGAA	2 cut(s)	525, 1397
BpuEI	CTTGAG	1 cut(s)	608
BpuMI	CCSGG	1 cut(s)	818
BsaBI	GATNNNNATC	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	449
BsaJI	CCNNGG	6 cut(s)	218, 268, 719, 816, 1876, 2082
BsaWI	WCCGGW	2 cut(s)	568, 2278
BsaXI	ACNNNNNCTCC	2 cut(s)	1217, 1247
Bsc4I	CCNNNNNNNGG	6 cut(s)	97, 589, 962, 1729, 2248, 2285
Bse118I	RCCGGY	2 cut(s)	242, 1367
Bse1I	ACTGG	3 cut(s)	30, 433, 1140
Bse8I	GATNNNNATC	1 cut(s)	117
BseAI	TCCGGA	1 cut(s)	2278
BseBI	CCWGG	2 cut(s)	87, 1331
BseDI	CCNNGG	6 cut(s)	218, 268, 719, 816, 1876, 2082
BseGI	GGATG	6 cut(s)	807, 861, 1326, 1919, 2200, 2367
BseJI	GATNNNNATC	1 cut(s)	117
BseLI	CCNNNNNNNGG	6 cut(s)	97, 589, 962, 1729, 2248, 2285
BseMII	CTCAG	7 cut(s)	42, 268, 330, 557, 1401, 1429, 2177
BseNI	ACTGG	3 cut(s)	30, 433, 1140
BseRI	GAGGAG	2 cut(s)	605, 2156
BseSI	GKGCMC	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	215, 1490
BseYI	CCCAGC	1 cut(s)	2241
BsgI	GTGCAG	2 cut(s)	1440, 2255
Bsh1236I	CGCG	1 cut(s)	1878
BshFI	GGCC	6 cut(s)	90, 829, 882, 921, 1881, 2161
BshNI	GGYRCC	1 cut(s)	448
BsiHKAI	GWGCWC	3 cut(s)	873, 1416, 1758
BsiHKCI	CYCGRG	2 cut(s)	97, 1913
BsiSI	CCGG	7 cut(s)	243, 569, 818, 879, 951, 1368, 2279
BslFI	GGGAC	4 cut(s)	737, 1042, 2224, 2302
BslI	CCNNNNNNNGG	6 cut(s)	97, 589, 962, 1729, 2248, 2285
BsmAI	GTCTC	2 cut(s)	1245, 1488
BsmFI	GGGAC	4 cut(s)	737, 1042, 2224, 2302
BsmI	GAATGC	2 cut(s)	1393, 1431
BsnI	GGCC	6 cut(s)	90, 829, 882, 921, 1881, 2161
BsoBI	CYCGRG	2 cut(s)	97, 1913
Bsp119I	TTCGAA	2 cut(s)	525, 1397
Bsp1286I	GDGCHC	6 cut(s)	276, 357, 873, 1416, 1758, 1849
Bsp13I	TCCGGA	1 cut(s)	2278
Bsp1407I	TGTACA	1 cut(s)	423
Bsp143I	GATC	6 cut(s)	118, 657, 804, 965, 1348, 2022
BspACI	CCGC	4 cut(s)	639, 1876, 1878, 2037
BspANI	GGCC	6 cut(s)	90, 829, 882, 921, 1881, 2161
BspCNI	CTCAG	7 cut(s)	43, 267, 331, 556, 1402, 1428, 2176
BspEI	TCCGGA	1 cut(s)	2278
BspFNI	CGCG	1 cut(s)	1878
BspLI	GGNNCC	3 cut(s)	450, 1058, 1820
BspMI	ACCTGC	1 cut(s)	676
BspPI	GGATC	4 cut(s)	126, 973, 1343, 2017
BspT104I	TTCGAA	2 cut(s)	525, 1397
BspT107I	GGYRCC	1 cut(s)	448
BsrFI	RCCGGY	2 cut(s)	242, 1367
BsrGI	TGTACA	1 cut(s)	423
BsrI	ACTGG	3 cut(s)	30, 433, 1140
BssAI	RCCGGY	2 cut(s)	242, 1367
BssECI	CCNNGG	6 cut(s)	218, 268, 719, 816, 1876, 2082
BssMI	GATC	6 cut(s)	118, 657, 804, 965, 1348, 2022
BssNAI	GTATAC	1 cut(s)	132
BssNI	GRCGYC	1 cut(s)	449
BssSI	CACGAG	1 cut(s)	1121
BssT1I	CCWWGG	3 cut(s)	218, 268, 719
Bst1107I	GTATAC	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	1121
Bst2UI	CCWGG	2 cut(s)	87, 1331
Bst4CI	ACNGT	5 cut(s)	522, 1150, 1256, 1893, 2020
BstACI	GRCGYC	1 cut(s)	449
BstAPI	GCANNNNNTGC	1 cut(s)	2233
BstAUI	TGTACA	1 cut(s)	423
BstBI	TTCGAA	2 cut(s)	525, 1397
BstC8I	GCNNGC	6 cut(s)	439, 580, 1369, 1429, 1455, 2307
BstDEI	CTNAG	9 cut(s)	51, 254, 339, 543, 1410, 1415, 1640, 1837, 2163
BstDSI	CCRYGG	1 cut(s)	1876
BstENI	CCTNNNNNAGG	1 cut(s)	587
BstF5I	GGATG	6 cut(s)	807, 861, 1326, 1919, 2200, 2367
BstFNI	CGCG	1 cut(s)	1878
BstH2I	RGCGCY	1 cut(s)	452
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	6 cut(s)	121, 660, 807, 968, 1351, 2025
BstMAI	GTCTC	2 cut(s)	1245, 1488
BstMBI	GATC	6 cut(s)	118, 657, 804, 965, 1348, 2022
BstMWI	GCNNNNNNNGC	4 cut(s)	476, 947, 2233, 2242
BstNI	CCWGG	2 cut(s)	87, 1331
BstNSI	RCATGY	6 cut(s)	441, 634, 994, 1453, 1485, 1705
BstPAI	GACNNNNGTC	1 cut(s)	1298
BstSCI	CCNGG	3 cut(s)	85, 816, 1329
BstSFI	CTRYAG	1 cut(s)	2046
BstSLI	GKGCMC	1 cut(s)	276
BstUI	CGCG	1 cut(s)	1878
BstV1I	GCAGC	2 cut(s)	215, 1490
BstV2I	GAAGAC	3 cut(s)	323, 1716, 1809
BstXI	CCANNNNNNTGG	1 cut(s)	1990
BstZ17I	GTATAC	1 cut(s)	132
BsuRI	GGCC	6 cut(s)	90, 829, 882, 921, 1881, 2161
BtgI	CCRYGG	1 cut(s)	1876
BtgZI	GCGATG	1 cut(s)	1304
BtsCI	GGATG	6 cut(s)	807, 861, 1326, 1919, 2200, 2367
BtsI	GCAGTG	2 cut(s)	1677, 1837
BtsIMutI	CAGTG	8 cut(s)	426, 655, 667, 1273, 1677, 1797, 1837, 2025
BveI	ACCTGC	1 cut(s)	676
Cac8I	GCNNGC	6 cut(s)	439, 580, 1369, 1429, 1455, 2307
CfoI	GCGC	1 cut(s)	451
Cfr10I	RCCGGY	2 cut(s)	242, 1367
Cfr13I	GGNCC	4 cut(s)	920, 953, 1056, 2159
Cfr42I	CCGCGG	1 cut(s)	1879
CseI	GACGC	2 cut(s)	430, 1288
Csp6I	GTAC	6 cut(s)	57, 94, 424, 1159, 2055, 2072
CspCI	CAANNNNNGTGG	4 cut(s)	250, 285, 1885, 1920
CviQI	GTAC	6 cut(s)	57, 94, 424, 1159, 2055, 2072
DdeI	CTNAG	9 cut(s)	51, 254, 339, 543, 1410, 1415, 1640, 1837, 2163
DinI	GGCGCC	1 cut(s)	450
DpnI	GATC	6 cut(s)	120, 659, 806, 967, 1350, 2024
DpnII	GATC	6 cut(s)	118, 657, 804, 965, 1348, 2022
EaeI	YGGCCR	1 cut(s)	1879
Ecl136II	GAGCTC	1 cut(s)	1414
Eco130I	CCWWGG	3 cut(s)	218, 268, 719
Eco147I	AGGCCT	2 cut(s)	90, 829
Eco24I	GRGCYC	3 cut(s)	357, 1416, 1849
Eco47I	GGWCC	2 cut(s)	953, 1056
Eco53kI	GAGCTC	1 cut(s)	1414
Eco57I	CTGAAG	1 cut(s)	1231
Eco88I	CYCGRG	2 cut(s)	97, 1913
EcoICRI	GAGCTC	1 cut(s)	1414
EcoNI	CCTNNNNNAGG	1 cut(s)	587
EcoRI	GAATTC	1 cut(s)	607
EcoRII	CCWGG	2 cut(s)	85, 1329
EcoT14I	CCWWGG	3 cut(s)	218, 268, 719
EcoT22I	ATGCAT	3 cut(s)	1186, 1395, 1707
EcoT38I	GRGCYC	3 cut(s)	357, 1416, 1849
EgeI	GGCGCC	1 cut(s)	450
EheI	GGCGCC	1 cut(s)	450
ErhI	CCWWGG	3 cut(s)	218, 268, 719
FalI	AAGNNNNNCTT	4 cut(s)	281, 313, 309, 341
FaqI	GGGAC	4 cut(s)	737, 1042, 2224, 2302
FauNDI	CATATG	2 cut(s)	1715, 2229
FbaI	TGATCA	2 cut(s)	657, 804
FblI	GTMKAC	2 cut(s)	131, 1872
Fnu4HI	GCNGC	5 cut(s)	229, 639, 1479, 1879, 2037
FokI	GGATG	5 cut(s)	814, 848, 1313, 1906, 2207
FriOI	GRGCYC	3 cut(s)	357, 1416, 1849
Fsp4HI	GCNGC	5 cut(s)	229, 639, 1479, 1879, 2037
FspBI	CTAG	8 cut(s)	368, 458, 693, 1296, 1491, 1724, 2285, 2294
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	5 cut(s)	229, 639, 1479, 1879, 2037
GsaI	CCCAGC	1 cut(s)	2245
GsuI	CTGGAG	1 cut(s)	167
HaeII	RGCGCY	1 cut(s)	452
HaeIII	GGCC	6 cut(s)	90, 829, 882, 921, 1881, 2161
HapII	CCGG	7 cut(s)	243, 569, 818, 879, 951, 1368, 2279
HgaI	GACGC	2 cut(s)	430, 1288
HhaI	GCGC	1 cut(s)	451
Hin1I	GRCGYC	1 cut(s)	449
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HincII	GTYRAC	1 cut(s)	1225
HindII	GTYRAC	1 cut(s)	1225
HpaII	CCGG	7 cut(s)	243, 569, 818, 879, 951, 1368, 2279
HphI	GGTGA	7 cut(s)	169, 1345, 1757, 2129, 2304, 2309, 2356
Hpy166II	GTNNAC	9 cut(s)	57, 132, 310, 426, 1225, 1745, 1873, 1896, 2072
Hpy8I	GTNNAC	9 cut(s)	57, 132, 310, 426, 1225, 1745, 1873, 1896, 2072
Hpy99I	CGWCG	2 cut(s)	446, 1118
HpyCH4III	ACNGT	5 cut(s)	522, 1150, 1256, 1893, 2020
HpyCH4IV	ACGT	2 cut(s)	75, 195
HpyF10VI	GCNNNNNNNGC	4 cut(s)	476, 947, 2233, 2242
HpyF3I	CTNAG	9 cut(s)	51, 254, 339, 543, 1410, 1415, 1640, 1837, 2163
HpySE526I	ACGT	2 cut(s)	75, 195
Hsp92I	GRCGYC	1 cut(s)	449
HspAI	GCGC	1 cut(s)	449
KasI	GGCGCC	1 cut(s)	448
Kpn2I	TCCGGA	1 cut(s)	2278
KroI	GCCGGC	1 cut(s)	1367
KroNI	GCCGGC	1 cut(s)	1369
Ksp22I	TGATCA	2 cut(s)	657, 804
KspI	CCGCGG	1 cut(s)	1879
Kzo9I	GATC	6 cut(s)	118, 657, 804, 965, 1348, 2022
LmnI	GCTCC	4 cut(s)	592, 876, 1761, 2281
Lsp1109I	GCAGC	2 cut(s)	215, 1490
LweI	GCATC	6 cut(s)	901, 1171, 1380, 1465, 1680, 2318
MaeI	CTAG	8 cut(s)	368, 458, 693, 1296, 1491, 1724, 2285, 2294
MaeII	ACGT	2 cut(s)	75, 195
MalI	GATC	6 cut(s)	120, 659, 806, 967, 1350, 2024
MboI	GATC	6 cut(s)	118, 657, 804, 965, 1348, 2022
MboII	GAAGA	9 cut(s)	277, 323, 989, 1511, 1666, 1721, 1782, 1814, 1933
MfeI	CAATTG	2 cut(s)	1191, 2323
MhlI	GDGCHC	6 cut(s)	276, 357, 873, 1416, 1758, 1849
Mly113I	GGCGCC	1 cut(s)	449
MlyI	GAGTC	4 cut(s)	1309, 1925, 1994, 2284
MmeI	TCCRAC	3 cut(s)	352, 1840, 2050
Mph1103I	ATGCAT	3 cut(s)	1186, 1395, 1707
MroI	TCCGGA	1 cut(s)	2278
MroNI	GCCGGC	1 cut(s)	1367
MseI	TTAA	4 cut(s)	164, 303, 1073, 1667
MslI	CAYNNNNRTG	4 cut(s)	866, 897, 1022, 1331
MspA1I	CMGCKG	2 cut(s)	228, 1878
MspI	CCGG	7 cut(s)	243, 569, 818, 879, 951, 1368, 2279
MspR9I	CCNGG	3 cut(s)	87, 818, 1331
MunI	CAATTG	2 cut(s)	1191, 2323
Mva1269I	GAATGC	2 cut(s)	1393, 1431
MvaI	CCWGG	2 cut(s)	87, 1331
MvnI	CGCG	1 cut(s)	1878
MwoI	GCNNNNNNNGC	4 cut(s)	476, 947, 2233, 2242
NaeI	GCCGGC	1 cut(s)	1369
NarI	GGCGCC	1 cut(s)	449
NciI	CCSGG	1 cut(s)	818
NdeI	CATATG	2 cut(s)	1715, 2229
NdeII	GATC	6 cut(s)	118, 657, 804, 965, 1348, 2022
NgoMIV	GCCGGC	1 cut(s)	1367
NlaIV	GGNNCC	3 cut(s)	450, 1058, 1820
NmuCI	GTSAC	6 cut(s)	512, 650, 1024, 1123, 1306, 2297
NsiI	ATGCAT	3 cut(s)	1186, 1395, 1707
NspI	RCATGY	6 cut(s)	441, 634, 994, 1453, 1485, 1705
NspV	TTCGAA	2 cut(s)	525, 1397
PaeI	GCATGC	1 cut(s)	441
PceI	AGGCCT	2 cut(s)	90, 829
PciI	ACATGT	1 cut(s)	990
PcsI	WCGNNNNNNNCGW	2 cut(s)	522, 1119
PctI	GAATGC	2 cut(s)	1393, 1431
PdiI	GCCGGC	1 cut(s)	1369
PfeI	GAWTC	5 cut(s)	320, 1101, 1271, 1796, 1863
PflFI	GACNNNGTC	1 cut(s)	1613
PkrI	GCNGC	5 cut(s)	230, 640, 1480, 1880, 2038
PleI	GAGTC	4 cut(s)	1309, 1924, 1994, 2284
PluTI	GGCGCC	1 cut(s)	452
PpsI	GAGTC	4 cut(s)	1309, 1924, 1994, 2284
PscI	ACATGT	1 cut(s)	990
PshAI	GACNNNNGTC	1 cut(s)	1298
PsiI	TTATAA	1 cut(s)	239
Psp124BI	GAGCTC	1 cut(s)	1416
Psp1406I	AACGTT	1 cut(s)	75
Psp6I	CCWGG	2 cut(s)	85, 1329
PspFI	CCCAGC	1 cut(s)	2241
PspGI	CCWGG	2 cut(s)	85, 1329
PspN4I	GGNNCC	3 cut(s)	450, 1058, 1820
PspPI	GGNCC	4 cut(s)	920, 953, 1056, 2159
PsyI	GACNNNGTC	1 cut(s)	1613
PvuII	CAGCTG	1 cut(s)	228
RsaI	GTAC	6 cut(s)	58, 95, 425, 1160, 2056, 2073
RsaNI	GTAC	6 cut(s)	57, 94, 424, 1159, 2055, 2072
RseI	CAYNNNNRTG	4 cut(s)	866, 897, 1022, 1331
SacI	GAGCTC	1 cut(s)	1416
SacII	CCGCGG	1 cut(s)	1879
SaqAI	TTAA	4 cut(s)	164, 303, 1073, 1667
SatI	GCNGC	5 cut(s)	229, 639, 1479, 1879, 2037
Sau3AI	GATC	6 cut(s)	118, 657, 804, 965, 1348, 2022
Sau96I	GGNCC	4 cut(s)	920, 953, 1056, 2159
SchI	GAGTC	4 cut(s)	1309, 1925, 1994, 2284
ScrFI	CCNGG	3 cut(s)	87, 818, 1331
SduI	GDGCHC	6 cut(s)	276, 357, 873, 1416, 1758, 1849
SfaNI	GCATC	6 cut(s)	901, 1171, 1380, 1465, 1680, 2318
SfcI	CTRYAG	1 cut(s)	2046
SfoI	GGCGCC	1 cut(s)	450
Sfr303I	CCGCGG	1 cut(s)	1879
SfuI	TTCGAA	2 cut(s)	525, 1397
SgrBI	CCGCGG	1 cut(s)	1879
SinI	GGWCC	2 cut(s)	953, 1056
SmiMI	CAYNNNNRTG	4 cut(s)	866, 897, 1022, 1331
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
SphI	GCATGC	1 cut(s)	441
SseBI	AGGCCT	2 cut(s)	90, 829
SsiI	CCGC	4 cut(s)	639, 1876, 1878, 2037
SspDI	GGCGCC	1 cut(s)	448
SspMI	CTAG	8 cut(s)	368, 458, 693, 1296, 1491, 1724, 2285, 2294
SstI	GAGCTC	1 cut(s)	1416
StuI	AGGCCT	2 cut(s)	90, 829
StyD4I	CCNGG	3 cut(s)	85, 816, 1329
StyI	CCWWGG	3 cut(s)	218, 268, 719
TaaI	ACNGT	5 cut(s)	522, 1150, 1256, 1893, 2020
TaiI	ACGT	2 cut(s)	78, 198
TaqI	TCGA	4 cut(s)	525, 622, 784, 1397
TaqII	GACCGA	1 cut(s)	2172
TatI	WGTACW	4 cut(s)	93, 423, 1158, 2071
TauI	GCSGC	3 cut(s)	641, 1881, 2039
TfiI	GAWTC	5 cut(s)	320, 1101, 1271, 1796, 1863
Tru1I	TTAA	4 cut(s)	164, 303, 1073, 1667
Tru9I	TTAA	4 cut(s)	164, 303, 1073, 1667
TscAI	CASTG	8 cut(s)	433, 655, 667, 1273, 1684, 1797, 1837, 2025
TseFI	GTSAC	6 cut(s)	512, 650, 1024, 1123, 1306, 2297
TseI	GCWGC	2 cut(s)	228, 1478
Tsp45I	GTSAC	6 cut(s)	512, 650, 1024, 1123, 1306, 2297
TspDTI	ATGAA	8 cut(s)	68, 1123, 1189, 1424, 1511, 1590, 1722, 2105
TspGWI	ACGGA	1 cut(s)	2072
TspRI	CASTG	8 cut(s)	433, 655, 667, 1273, 1684, 1797, 1837, 2025
Tth111I	GACNNNGTC	1 cut(s)	1613
VpaK11BI	GGWCC	2 cut(s)	953, 1056
XagI	CCTNNNNNAGG	1 cut(s)	587
XapI	RAATTY	6 cut(s)	600, 607, 1048, 1130, 1336, 2273
XbaI	TCTAGA	1 cut(s)	1490
XceI	RCATGY	6 cut(s)	441, 634, 994, 1453, 1485, 1705
XcmI	CCANNNNNNNNNTGG	2 cut(s)	323, 795
XmiI	GTMKAC	2 cut(s)	131, 1872
XspI	CTAG	8 cut(s)	368, 458, 693, 1296, 1491, 1724, 2285, 2294
Zsp2I	ATGCAT	3 cut(s)	1186, 1395, 1707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.