Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001192

Physical Location & Seq

Genomic Coordinates Reverse (-)

48596949 .. 48603962

Gene Structure 7014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG262500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2358 bp

ATGGCAGGGATGACTGGAAACATAACATCATTGCAATCTCAAGTGTGCATTGAATTACCTCCCAACGTACATTCGCAGGGCATCATAGGTCTGGAAAAAGATGGTCCAGGAATGAACTTTAGTTTTCCGATATTGGAGATGCAGATGATCCTGATTTTCTCCATCACCCAAGCCTTCCATTTGATTTTGAAGAATTTTGAAATTCCCAAGTTCACCAGCGAGATTCTTACGGGTATAGTCTTAGGCCCTTCACTCATAGGAGCCTATAATGTATTCGAGAAGGACATCTTTCCTCATGACAATCAAGCTATAATTGTAGTGCTGGGTGAAATTGGTTATGAACTCTTTCTGTTTCTAGTTGGAGTAAGAATGGACCTGGAATTGATAAGAAGAACAGGGCGCAAAGTCATGATCACCGGTATTTTATGCGTGTTAGTCCCTTTTGTAACCAGTATGGTCGTCCAAAACCATCTCATGATCCCTGTGTTTAAGCTGACCAAAGATCAAATCTCTAAGCTTCCTTATCTAACGACATCATATTGCATGACTTCGTCTCCCGTCATTGTTCTCCTTCTTGAAGACCTGAATCTCCTAAATTCTGAAATCGGCCGACTAGCTGTGTCCGCATCATCAATCAGTGAATTATTCGGTACTATCTGTATCTGGTTTTCCTCCGTATTGTACAGAATGGGAAAAGTGAAACCTGTGGCTGAAACTTTATTAGTTTTCGGAGCAGTTATTGGCAGCATGCTAGCATTTCTGTTCATATTCCGACCAATACTGTTTTGGGTGATTAGGCAGACCCCGCATAACAAGCCTGTTAAGAAAAGCTATGTCAATGCCATAATCGTGCTGATGCTTTTTGTAATAATACTATCACATTATTACGGCCATTCTTTCCATTTCCTGGTTTTCGTATTGGGTCTGTCAGTCCCAGCTGGACAACCTTTGGGATCAACTCTTGAAGAATTGCTCCATGTCTTCATTTCTCAAGTGCTTCTACCCATTTATGTGACTGCATATGCAATGAAGGCAAATTTTCGGTTGGTCGATTTCAATGACCCGGCCACAGTAATCACTGCTATTCTCATCGTTTTCATTTTTCTGCTCAAAATCGTAGGCAGCATGGTTGCTCCATTGTATTGTAAAATGCCCTTGAACGATGCATTTGTGCTTGCTCTCATTCTAAGCTCCAGAGGCATTGTCCAACTTTCCGTCTATACTCGATTCAAAGACGATCAGACTGCAAGTGAATCGGTACATGCTTTGAGTCTTGCTAGCATTGTAGTGACTGCAACTCTTGTGCCCATTGTCGTGAACCGCCTCTATGATCCTGCAAAGAAATTCAGAGTCTACGAAAGAAGGGATATTATGCATTTGAAACCCAATGCTGAGCTCAAAATTCTTGCCTGCATTCACAGGTCAGGTAACATTCCTCCAGTCATCAATCTACTTGATGCAGCATGTCCATCTAAAGAAAACCCCATTGATATATATGTTCTTCACCTCATCGAATTAATTGGAAGAAGCTCCCCAGTTTTTATCTCCCACCAAATGCAGAAAAAGAGCATTTCCAATGGTTACTCGGACAATGTCATTCTTTACTTCAATAATTTCGTGAGAGAAAATCTTGGTGCTGTTACTTTAAACATATTCACAGCAATCTCTCCACCAAAATACATGCAAGAAGACGTATGCACACTTGCAATGGACAAGCACACATCCCTTATTGTGCTCCCGTTTCATCGAACATGGGCGATTGACGGGTCTATTGAGTCAGACGACAATGCAACAAGGACACTGAATCGCAATGTACTCGAAAGAGCTCCTTGCTCGGTAGGCATCCTTGTGGACCGTGGCCATTTAGGCCTGTCCACCTCTGTTGTGGCTTCGGCACAATCATTTTCGGTGGCTGTAATCTTCTTCGGTGGGGAAGACGATAGGGAGGCATTAACATTTGCAAAAAGAATGACCAGCGACTCGGCAATTAGCTTAACTGTGATCCGATTAGTTGCTGTGACTAATGATTTTACTACCGGTGGGGAATGGGATAAAATACTTGATACTGAGTTATTGAAGGAGTTTACACAGAGTCAGGTGGGTGAAGGGTTTGTGATATTTTTAGAGGAGTTGGTGAAAGATGGACCGCAAACAGCATTACTACTAAGGTCGATAGTGGATGAGTATGATCTAATTATAGTTGGGAGAAGGTTTCAGGCAGAGTGCCCTCAGACTGCAGGACTTTCGGAATGGAGTGACTTTCCTGAGCTAGGGACTATAGGAGACCTGCTTGCATCAACCGATTTAAATTGTAAAACTTCAATCCTAGTGATAAAACATCAACTACAGAACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

785

Amino Acids

87.09

Weight (kDa)

6.08

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	58 - 439	2.7e-33	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	498 - 623	1.3e-16	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	634 - 780	2.3e-08	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44900 AT5G22900
fragaria_vesca	FvH4_3g06341 FvH4_3g23050 FvH4_3g39831 FvH4_6g14510 FvH4_7g14610
malus_domestica	MD02G1295300.v1.1 MD03G1057300.v1.1 MD05G1291400.v1.1 MD10G1267300.v1.1 MD11G1059200.v1.1 MD14G1082300.v1.1
prunus_persica	Prupe.1G346300_v2.0.a1 Prupe.2G029000_v2.0.a1 Prupe.4G074200_v2.0.a1 Prupe.6G047400_v2.0.a1 Prupe.6G047500_v2.0.a1 Prupe.6G047600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0356111 RchiOBHm_Chr1g0356121 RchiOBHm_Chr4g0446581 RchiOBHm_Chr5g0071781
rosa_laevigata	RLG00000005649 RLG00000028106 RLG00000036246 RLG00000036247 RLG00000036248
rosa_multiflora	Rmu_sc0001113.1_g000009 Rmu_sc0002569.1_g000023 Rmu_sc0003229.1_g000013 Rmu_sc0036166.1_g000001 Rmu_ssc0000144.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009380 Rroxscaffold_1G00009410 Rroxscaffold_4G00299800 Rroxscaffold_5G00386970
rosa_rugosa	Rorug04G0372400 Rorug05G0414600 Rorug05G0414700
rosa_samantha	Rh1AG262500 Rh1BG231000 Rh1CG245800 Rh4AG434100 Rh4BG443300 Rh4CG460600 Rh4DG442100 Rh5AG470700 Rh5BG490400 Rh5CG514400 Rh5DG501400 Rh5DG501600 Rh5DG501700
rosa_wichuraiana	Rw1G023190 Rw4G037110 Rw5G043740 Rw5G043750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2295
AccB7I	CCANNNNNTGG	1 cut(s)	907
AccI	GTMKAC	1 cut(s)	1353
AciI	CCGC	4 cut(s)	624, 806, 1321, 2147
AclWI	GGATC	5 cut(s)	142, 472, 961, 1325, 1996
AcoI	YGGCCR	4 cut(s)	607, 889, 1065, 1858
AcsI	RAATTY	6 cut(s)	193, 201, 595, 1036, 1343, 1401
AfaI	GTAC	5 cut(s)	69, 652, 683, 1260, 1815
AfiI	CCNNNNNNNGG	2 cut(s)	907, 2270
AgeI	ACCGGT	2 cut(s)	416, 2036
AjnI	CCWGG	3 cut(s)	106, 375, 906
Alw21I	GWGCWC	3 cut(s)	1398, 1737, 1828
Alw26I	GTCTC	2 cut(s)	558, 2277
AlwI	GGATC	5 cut(s)	142, 472, 961, 1325, 1996
AoxI	GGCC	6 cut(s)	244, 607, 889, 1065, 1858, 1867
ApeKI	GCWGC	3 cut(s)	744, 1122, 1460
ApoI	RAATTY	6 cut(s)	193, 201, 595, 1036, 1343, 1401
AseI	ATTAAT	1 cut(s)	1517
AsiGI	ACCGGT	2 cut(s)	416, 2036
Asp700I	GAANNNNTTC	1 cut(s)	345
AspLEI	GCGC	1 cut(s)	402
AspS9I	GGNCC	5 cut(s)	104, 245, 373, 1852, 2144
AsuC2I	CCSGG	1 cut(s)	1064
AsuHPI	GGTGA	8 cut(s)	157, 205, 338, 406, 802, 1496, 2114, 2146
AsuNHI	GCTAGC	2 cut(s)	751, 1277
AvaII	GGWCC	4 cut(s)	104, 373, 1852, 2144
BaeGI	GKGCMC	2 cut(s)	1308, 2228
BalI	TGGCCA	1 cut(s)	1860
BanII	GRGCYC	2 cut(s)	1398, 1828
BbsI	GAAGAC	4 cut(s)	585, 973, 1695, 1941
Bbv12I	GWGCWC	3 cut(s)	1398, 1737, 1828
BbvI	GCAGC	3 cut(s)	756, 1134, 1472
BccI	CCATC	5 cut(s)	95, 170, 477, 1477, 2135
BceAI	ACGGC	1 cut(s)	904
BcgI	CGANNNNNNTGC	8 cut(s)	1226, 1236, 1260, 1270, 1798, 1832, 2226, 2260
BciT130I	CCWGG	3 cut(s)	108, 377, 908
BclI	TGATCA	1 cut(s)	411
BcnI	CCSGG	1 cut(s)	1064
BcoDI	GTCTC	2 cut(s)	558, 2277
BfaI	CTAG	6 cut(s)	356, 614, 752, 1278, 2270, 2327
BfmI	CTRYAG	3 cut(s)	2235, 2277, 2345
BfuAI	ACCTGC	1 cut(s)	2295
BglI	GCCNNNNNGGC	1 cut(s)	1866
BisI	GCNGC	3 cut(s)	745, 1123, 1461
BlpI	GCTNAGC	1 cut(s)	1392
BlsI	GCNGC	3 cut(s)	746, 1124, 1462
Bme1390I	CCNGG	4 cut(s)	108, 377, 908, 1064
Bme18I	GGWCC	4 cut(s)	104, 373, 1852, 2144
BmgT120I	GGNCC	5 cut(s)	104, 245, 373, 1852, 2144
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	4 cut(s)	108, 377, 908, 1064
BmrI	ACTGGG	1 cut(s)	1529
BmsI	GCATC	8 cut(s)	90, 129, 635, 846, 1153, 1447, 1851, 2303
BmtI	GCTAGC	2 cut(s)	755, 1281
BmuI	ACTGGG	1 cut(s)	1529
BpiI	GAAGAC	4 cut(s)	585, 973, 1695, 1941
BpmI	CTGGAG	2 cut(s)	1177, 1422
Bpu10I	CCTNAGC	1 cut(s)	2265
Bpu1102I	GCTNAGC	1 cut(s)	1392
BpuEI	CTTGAG	2 cut(s)	24, 975
BpuMI	CCSGG	1 cut(s)	1064
BsaI	GGTCTC	1 cut(s)	2277
BsaJI	CCNNGG	1 cut(s)	1855
BsaWI	WCCGGW	2 cut(s)	416, 2036
BsaXI	ACNNNNNCTCC	2 cut(s)	538, 568
Bsc4I	CCNNNNNNNGG	2 cut(s)	907, 2270
Bse118I	RCCGGY	2 cut(s)	416, 2036
Bse1I	ACTGG	4 cut(s)	19, 450, 1439, 1535
Bse3DI	GCAATG	4 cut(s)	29, 1032, 1713, 1816
BseBI	CCWGG	3 cut(s)	108, 377, 908
BseDI	CCNNGG	1 cut(s)	1855
BseGI	GGATG	4 cut(s)	15, 1721, 1842, 2185
BseLI	CCNNNNNNNGG	2 cut(s)	907, 2270
BseMI	GCAATG	4 cut(s)	29, 1032, 1713, 1816
BseMII	CTCAG	4 cut(s)	1383, 2058, 2243, 2256
BseNI	ACTGG	4 cut(s)	19, 450, 1439, 1535
BseRI	GAGGAG	1 cut(s)	2141
BseSI	GKGCMC	2 cut(s)	1308, 2228
BseX3I	CGGCCG	1 cut(s)	607
BseXI	GCAGC	3 cut(s)	756, 1134, 1472
BseYI	CCCAGC	2 cut(s)	322, 934
Bsh1285I	CGRYCG	1 cut(s)	610
BshFI	GGCC	6 cut(s)	246, 609, 891, 1067, 1860, 1869
BshTI	ACCGGT	2 cut(s)	416, 2036
BsiEI	CGRYCG	1 cut(s)	610
BsiHKAI	GWGCWC	3 cut(s)	1398, 1737, 1828
BsiSI	CCGG	3 cut(s)	417, 1064, 2037
BslFI	GGGAC	3 cut(s)	422, 917, 2287
BslI	CCNNNNNNNGG	2 cut(s)	907, 2270
BsmAI	GTCTC	2 cut(s)	558, 2277
BsmBI	CGTCTC	1 cut(s)	558
BsmFI	GGGAC	3 cut(s)	422, 917, 2287
BsmI	GAATGC	1 cut(s)	1413
BsnI	GGCC	6 cut(s)	246, 609, 891, 1067, 1860, 1869
Bso31I	GGTCTC	1 cut(s)	2277
Bsp1286I	GDGCHC	5 cut(s)	1308, 1398, 1737, 1828, 2228
Bsp1407I	TGTACA	1 cut(s)	681
Bsp143I	GATC	9 cut(s)	147, 411, 477, 502, 953, 1237, 1330, 2001, 2188
Bsp1720I	GCTNAGC	1 cut(s)	1392
BspACI	CCGC	4 cut(s)	624, 806, 1321, 2147
BspANI	GGCC	6 cut(s)	246, 609, 891, 1067, 1860, 1869
BspCNI	CTCAG	4 cut(s)	1384, 2059, 2242, 2257
BspHI	TCATGA	3 cut(s)	295, 408, 474
BspLI	GGNNCC	1 cut(s)	262
BspMAI	CTGCAG	1 cut(s)	2239
BspMI	ACCTGC	1 cut(s)	2295
BspOI	GCTAGC	2 cut(s)	755, 1281
BspPI	GGATC	5 cut(s)	142, 472, 961, 1325, 1996
BspTNI	GGTCTC	1 cut(s)	2277
BsrDI	GCAATG	4 cut(s)	29, 1032, 1713, 1816
BsrFI	RCCGGY	2 cut(s)	416, 2036
BsrGI	TGTACA	1 cut(s)	681
BsrI	ACTGG	4 cut(s)	19, 450, 1439, 1535
BssAI	RCCGGY	2 cut(s)	416, 2036
BssECI	CCNNGG	1 cut(s)	1855
BssMI	GATC	9 cut(s)	147, 411, 477, 502, 953, 1237, 1330, 2001, 2188
Bst2UI	CCWGG	3 cut(s)	108, 377, 908
Bst4CI	ACNGT	4 cut(s)	783, 1072, 1856, 1999
BstAUI	TGTACA	1 cut(s)	681
BstC8I	GCNNGC	6 cut(s)	749, 753, 1176, 1279, 1411, 2292
BstDEI	CTNAG	8 cut(s)	241, 513, 1187, 1392, 2067, 2165, 2229, 2265
BstDSI	CCRYGG	1 cut(s)	1855
BstENI	CCTNNNNNAGG	1 cut(s)	2268
BstF5I	GGATG	4 cut(s)	15, 1721, 1842, 2185
BstHHI	GCGC	1 cut(s)	402
BstKTI	GATC	9 cut(s)	150, 414, 480, 505, 956, 1240, 1333, 2004, 2191
BstMAI	GTCTC	2 cut(s)	558, 2277
BstMBI	GATC	9 cut(s)	147, 411, 477, 502, 953, 1237, 1330, 2001, 2188
BstMCI	CGRYCG	1 cut(s)	610
BstMWI	GCNNNNNNNGC	7 cut(s)	623, 805, 814, 1031, 1197, 1839, 1866
BstNI	CCWGG	3 cut(s)	108, 377, 908
BstNSI	RCATGY	4 cut(s)	751, 1265, 1467, 1684
BstSCI	CCNGG	4 cut(s)	106, 375, 906, 1062
BstSFI	CTRYAG	3 cut(s)	2235, 2277, 2345
BstSLI	GKGCMC	2 cut(s)	1308, 2228
BstV1I	GCAGC	3 cut(s)	756, 1134, 1472
BstV2I	GAAGAC	4 cut(s)	585, 973, 1695, 1941
BstZI	CGGCCG	1 cut(s)	607
BsuRI	GGCC	6 cut(s)	246, 609, 891, 1067, 1860, 1869
BtgI	CCRYGG	1 cut(s)	1855
BtsCI	GGATG	4 cut(s)	15, 1721, 1842, 2185
BtsI	GCAGTG	1 cut(s)	1077
BtsIMutI	CAGTG	3 cut(s)	643, 1077, 1799
BveI	ACCTGC	1 cut(s)	2295
Cac8I	GCNNGC	6 cut(s)	749, 753, 1176, 1279, 1411, 2292
CciI	TCATGA	3 cut(s)	295, 408, 474
CfoI	GCGC	1 cut(s)	402
Cfr10I	RCCGGY	2 cut(s)	416, 2036
Cfr13I	GGNCC	5 cut(s)	104, 245, 373, 1852, 2144
Csp6I	GTAC	5 cut(s)	68, 651, 682, 1259, 1814
CspAI	ACCGGT	2 cut(s)	416, 2036
CspCI	CAANNNNNGTGG	2 cut(s)	1864, 1899
CviQI	GTAC	5 cut(s)	68, 651, 682, 1259, 1814
DdeI	CTNAG	8 cut(s)	241, 513, 1187, 1392, 2067, 2165, 2229, 2265
DpnI	GATC	9 cut(s)	149, 413, 479, 504, 955, 1239, 1332, 2003, 2190
DpnII	GATC	9 cut(s)	147, 411, 477, 502, 953, 1237, 1330, 2001, 2188
DraI	TTTAAA	2 cut(s)	1647, 2307
EaeI	YGGCCR	4 cut(s)	607, 889, 1065, 1858
EagI	CGGCCG	1 cut(s)	607
Ecl136II	GAGCTC	2 cut(s)	1396, 1826
EclXI	CGGCCG	1 cut(s)	607
Eco147I	AGGCCT	1 cut(s)	1869
Eco24I	GRGCYC	2 cut(s)	1398, 1828
Eco31I	GGTCTC	1 cut(s)	2277
Eco47I	GGWCC	4 cut(s)	104, 373, 1852, 2144
Eco52I	CGGCCG	1 cut(s)	607
Eco53kI	GAGCTC	2 cut(s)	1396, 1826
EcoICRI	GAGCTC	2 cut(s)	1396, 1826
EcoNI	CCTNNNNNAGG	1 cut(s)	2268
EcoO109I	RGGNCCY	1 cut(s)	245
EcoRII	CCWGG	3 cut(s)	106, 375, 906
EcoT22I	ATGCAT	2 cut(s)	1168, 1377
EcoT38I	GRGCYC	2 cut(s)	1398, 1828
Esp3I	CGTCTC	1 cut(s)	558
FalI	AAGNNNNNCTT	4 cut(s)	272, 304, 1813, 1845
FaqI	GGGAC	3 cut(s)	422, 917, 2287
FauI	CCCGC	1 cut(s)	813
FauNDI	CATATG	1 cut(s)	1021
FbaI	TGATCA	1 cut(s)	411
FblI	GTMKAC	1 cut(s)	1353
Fnu4HI	GCNGC	3 cut(s)	745, 1123, 1461
FokI	GGATG	4 cut(s)	22, 1708, 1829, 2192
FriOI	GRGCYC	2 cut(s)	1398, 1828
Fsp4HI	GCNGC	3 cut(s)	745, 1123, 1461
FspBI	CTAG	6 cut(s)	356, 614, 752, 1278, 2270, 2327
GlaI	GCGC	1 cut(s)	401
GluI	GCNGC	3 cut(s)	745, 1123, 1461
GsaI	CCCAGC	2 cut(s)	326, 938
GsuI	CTGGAG	2 cut(s)	1177, 1422
HaeIII	GGCC	6 cut(s)	246, 609, 891, 1067, 1860, 1869
HapII	CCGG	3 cut(s)	417, 1064, 2037
HhaI	GCGC	1 cut(s)	402
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HindIII	AAGCTT	1 cut(s)	515
HpaII	CCGG	3 cut(s)	417, 1064, 2037
HphI	GGTGA	8 cut(s)	157, 205, 338, 406, 802, 1496, 2114, 2146
Hpy166II	GTNNAC	6 cut(s)	213, 1318, 1354, 1852, 1875, 2085
Hpy8I	GTNNAC	6 cut(s)	213, 1318, 1354, 1852, 1875, 2085
HpyAV	CCTTC	9 cut(s)	184, 258, 274, 581, 1024, 1356, 2071, 2099, 2202
HpyCH4III	ACNGT	4 cut(s)	783, 1072, 1856, 1999
HpyCH4IV	ACGT	2 cut(s)	66, 1692
HpyF10VI	GCNNNNNNNGC	7 cut(s)	623, 805, 814, 1031, 1197, 1839, 1866
HpyF3I	CTNAG	8 cut(s)	241, 513, 1187, 1392, 2067, 2165, 2229, 2265
HpySE526I	ACGT	2 cut(s)	66, 1692
HspAI	GCGC	1 cut(s)	400
Ksp22I	TGATCA	1 cut(s)	411
Kzo9I	GATC	9 cut(s)	147, 411, 477, 502, 953, 1237, 1330, 2001, 2188
LmnI	GCTCC	8 cut(s)	260, 731, 978, 1138, 1196, 1535, 1740, 1831
Lsp1109I	GCAGC	3 cut(s)	756, 1134, 1472
LweI	GCATC	8 cut(s)	90, 129, 635, 846, 1153, 1447, 1851, 2303
MaeI	CTAG	6 cut(s)	356, 614, 752, 1278, 2270, 2327
MaeII	ACGT	2 cut(s)	66, 1692
MaeIII	GTNAC	8 cut(s)	445, 1012, 1288, 1427, 1580, 1639, 2017, 2255
MalI	GATC	9 cut(s)	149, 413, 479, 504, 955, 1239, 1332, 2003, 2190
MboI	GATC	9 cut(s)	147, 411, 477, 502, 953, 1237, 1330, 2001, 2188
MhlI	GDGCHC	5 cut(s)	1308, 1398, 1737, 1828, 2228
MlsI	TGGCCA	1 cut(s)	1860
MluNI	TGGCCA	1 cut(s)	1860
MlyI	GAGTC	5 cut(s)	1279, 1359, 1784, 1973, 2101
MmeI	TCCRAC	3 cut(s)	340, 796, 1231
Mox20I	TGGCCA	1 cut(s)	1860
Mph1103I	ATGCAT	2 cut(s)	1168, 1377
MroXI	GAANNNNTTC	1 cut(s)	345
MscI	TGGCCA	1 cut(s)	1860
MseI	TTAA	8 cut(s)	489, 822, 1517, 1646, 1952, 1994, 2306, 2356
MslI	CAYNNNNRTG	5 cut(s)	848, 1010, 1286, 1313, 1847
Msp20I	TGGCCA	1 cut(s)	1860
MspA1I	CMGCKG	1 cut(s)	938
MspI	CCGG	3 cut(s)	417, 1064, 2037
MspR9I	CCNGG	4 cut(s)	108, 377, 908, 1064
Mva1269I	GAATGC	1 cut(s)	1413
MvaI	CCWGG	3 cut(s)	108, 377, 908
MwoI	GCNNNNNNNGC	7 cut(s)	623, 805, 814, 1031, 1197, 1839, 1866
NciI	CCSGG	1 cut(s)	1064
NdeI	CATATG	1 cut(s)	1021
NdeII	GATC	9 cut(s)	147, 411, 477, 502, 953, 1237, 1330, 2001, 2188
NheI	GCTAGC	2 cut(s)	751, 1277
NlaIV	GGNNCC	1 cut(s)	262
NmeAIII	GCCGAG	1 cut(s)	1961
NmuCI	GTSAC	4 cut(s)	1012, 1288, 2017, 2255
NsiI	ATGCAT	2 cut(s)	1168, 1377
NspI	RCATGY	4 cut(s)	751, 1265, 1467, 1684
PaeI	GCATGC	1 cut(s)	751
PagI	TCATGA	3 cut(s)	295, 408, 474
PceI	AGGCCT	1 cut(s)	1869
PctI	GAATGC	1 cut(s)	1413
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	5 cut(s)	223, 586, 1227, 1253, 1804
PflFI	GACNNNGTC	2 cut(s)	550, 1592
PflMI	CCANNNNNTGG	1 cut(s)	907
PfoI	TCCNGGA	1 cut(s)	106
PinAI	ACCGGT	2 cut(s)	416, 2036
PkrI	GCNGC	3 cut(s)	746, 1124, 1462
PleI	GAGTC	5 cut(s)	1278, 1358, 1783, 1973, 2100
PpsI	GAGTC	5 cut(s)	1278, 1358, 1783, 1973, 2100
PshBI	ATTAAT	1 cut(s)	1517
Psp124BI	GAGCTC	2 cut(s)	1398, 1828
Psp6I	CCWGG	3 cut(s)	106, 375, 906
PspFI	CCCAGC	2 cut(s)	322, 934
PspGI	CCWGG	3 cut(s)	106, 375, 906
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	5 cut(s)	104, 245, 373, 1852, 2144
PstI	CTGCAG	1 cut(s)	2239
PsyI	GACNNNGTC	2 cut(s)	550, 1592
PvuII	CAGCTG	1 cut(s)	938
RsaI	GTAC	5 cut(s)	69, 652, 683, 1260, 1815
RsaNI	GTAC	5 cut(s)	68, 651, 682, 1259, 1814
RseI	CAYNNNNRTG	5 cut(s)	848, 1010, 1286, 1313, 1847
SacI	GAGCTC	2 cut(s)	1398, 1828
SaqAI	TTAA	8 cut(s)	489, 822, 1517, 1646, 1952, 1994, 2306, 2356
SatI	GCNGC	3 cut(s)	745, 1123, 1461
Sau3AI	GATC	9 cut(s)	147, 411, 477, 502, 953, 1237, 1330, 2001, 2188
Sau96I	GGNCC	5 cut(s)	104, 245, 373, 1852, 2144
SchI	GAGTC	5 cut(s)	1279, 1359, 1784, 1973, 2101
ScrFI	CCNGG	4 cut(s)	108, 377, 908, 1064
SduI	GDGCHC	5 cut(s)	1308, 1398, 1737, 1828, 2228
SfaNI	GCATC	8 cut(s)	90, 129, 635, 846, 1153, 1447, 1851, 2303
SfcI	CTRYAG	3 cut(s)	2235, 2277, 2345
SfiI	GGCCNNNNNGGCC	1 cut(s)	1866
SinI	GGWCC	4 cut(s)	104, 373, 1852, 2144
SmiI	ATTTAAAT	1 cut(s)	2307
SmiMI	CAYNNNNRTG	5 cut(s)	848, 1010, 1286, 1313, 1847
SmlI	CTYRAG	2 cut(s)	39, 990
SmoI	CTYRAG	2 cut(s)	39, 990
SphI	GCATGC	1 cut(s)	751
SseBI	AGGCCT	1 cut(s)	1869
SsiI	CCGC	4 cut(s)	624, 806, 1321, 2147
SspMI	CTAG	6 cut(s)	356, 614, 752, 1278, 2270, 2327
SstI	GAGCTC	2 cut(s)	1398, 1828
StuI	AGGCCT	1 cut(s)	1869
StyD4I	CCNGG	4 cut(s)	106, 375, 906, 1062
SwaI	ATTTAAAT	1 cut(s)	2307
TaaI	ACNGT	4 cut(s)	783, 1072, 1856, 1999
TaiI	ACGT	2 cut(s)	69, 1695
TaqI	TCGA	7 cut(s)	276, 1050, 1225, 1512, 1747, 1818, 2171
TatI	WGTACW	2 cut(s)	681, 1813
TfiI	GAWTC	5 cut(s)	223, 586, 1227, 1253, 1804
Tru1I	TTAA	8 cut(s)	489, 822, 1517, 1646, 1952, 1994, 2306, 2356
Tru9I	TTAA	8 cut(s)	489, 822, 1517, 1646, 1952, 1994, 2306, 2356
TscAI	CASTG	3 cut(s)	643, 1084, 1806
TseFI	GTSAC	4 cut(s)	1012, 1288, 2017, 2255
TseI	GCWGC	3 cut(s)	744, 1122, 1460
Tsp45I	GTSAC	4 cut(s)	1012, 1288, 2017, 2255
TspDTI	ATGAA	7 cut(s)	128, 354, 754, 973, 1043, 1087, 1733
TspGWI	ACGGA	2 cut(s)	664, 1204
TspRI	CASTG	3 cut(s)	643, 1084, 1806
Tth111I	GACNNNGTC	2 cut(s)	550, 1592
Van91I	CCANNNNNTGG	1 cut(s)	907
VpaK11BI	GGWCC	4 cut(s)	104, 373, 1852, 2144
VspI	ATTAAT	1 cut(s)	1517
XagI	CCTNNNNNAGG	1 cut(s)	2268
XapI	RAATTY	6 cut(s)	193, 201, 595, 1036, 1343, 1401
XceI	RCATGY	4 cut(s)	751, 1265, 1467, 1684
XcmI	CCANNNNNNNNNTGG	2 cut(s)	783, 1882
XmiI	GTMKAC	1 cut(s)	1353
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	6 cut(s)	356, 614, 752, 1278, 2270, 2327
Zsp2I	ATGCAT	2 cut(s)	1168, 1377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.