Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001192

Physical Location & Seq

Genomic Coordinates Forward (+)

42288690 .. 42292338

Gene Structure 3649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1291400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2409 bp

ATGAATAATGTGATTCATCATCCTGTCACAATATGCACGGTATTTCCGCGTCGTGTTAATTCAATAGGCATATGGAATGCATCACAAACTAGTCGGGTGAGTGTTAATGCATCGCTCCTGCATTTCTCGTTTCCGTTGCAGAACTACACCCTCCCAGTTCTGGAATTTGAAATGACTCTCATCTACATCGTCACCCAACTCACCCATTTGTTTCTCAATATGTTTGGCCTCCCAGTGCTTGCCGCTCAACTTGTGGCTGGAATACTCCTTGGTGATGCAGGACTTGACAGAGTGATCCAACATTTTCGTCCTGAACAAGAGAATCCCATATTTCCTTTTACTAATCAGGAAGTACTCAACGTAATATCACTGTTTGGATTCACACTCTTCAGCTTCTTGATCGGAGTCAAAATAGACTTGGGATTAGTATCAAAAATCGGAAAAAAGGCTATCTACAACGGCGTGTTAACCTTGGTGGTGCCTCTAATAGCCGGCTTCTTAACGCTGCTCTTCCTCACCTGGGAGTGGTCCTTAAACGCGGACGAAGTCGTGCAGCTTATTTTCGTAACAGCAATGCATATTCAGGCTCCGTCTACCGTCATTGCTTGCCTCCTCACCGAGCTCAAGATCCTAAATACCGAACTTGGCCGGCTCGCATTATCTTCGGCACTCGTCTGTGATTTCTTTAGCATTGCCCTAACTACTGTTGCGACGTTGGTGAAAGTCTTACAGAACGATGCATGGAGGGGCATGAGGGACATTGGGGTGATGATAATCTATACTTTATCTGTTTTCTGTGTTTTCCGTCCAATAATGTTTTGGATTGTGAAAAGAACCCCTGAAGGCAGCCCTGTTAAGGATTCATACATTTTCTTCATCCTGCTGGCATTTTTGGGATCTGGATTGTTTTCCCACTGGTGTGAGCTCCCGATCGTGATCGGGCCTTTGATCTTAGGGTTCGCAGTGCCAGATGGGCCCCCACTAGGAGCTACTTTGGTCAAAAAGCTTGACTTTATGGTCAATAGGGTTTTCATGCCAGTTTTTGTGACCACGTCCTTGATGAGGGTTACTGTATCCTTAGAAATGCCTCCGGCTCATAGAAGGGTGGTATTAGGCACCGCCATTGTTACTTTTGTGATTTTCTTGAGCAAATTTGCAGCCTCTATGGTGACTCCTTTGTGTTGCAAGATGCCTTTGAGGCATGCAGTGGCACTGGCTCTCATAATGACCAGCAAAGGCGTTGTCGAGATAGCTGCATACACCATCGCTAAAGACACTTGGGTTATAGTTTCTGGGGTCTTTAACCATATGATGTTCACAGTTTTATTGAGTGCAATTGTCGTGCCACCTCTTGTGAAGTACTTGTACGATCCTAAGAAAAAATATGCAGGCTACCACAGAAAAGCCCTTCTCAATTCCAAACCCAATTCGGAGCTCCGAATTCTCGCATGCATCAACAGAGCTGATAACACCCCCGCCATCATCAACCTTATCGATGCCTCGTGCCCGACTCGAGAAAGCCCCATCGGCCTCTACGTTCTTCACCTCATCGAGCTAGTTGCTCGAACCACCTCCGTCTTAATCTCACACAACTTACAAACAAGAGCCCTCTCCAATTATTCGTACTCCGATAACATCATCCGTTCGTTCGTTCAGTTTATGAAAGAGAATGAAGAAGCAGTCTTCGTGCATGTATTTACGGCTATATCTCCATCCCTATACATGTACGACGACGTATGCACCCTCGCGCTGGACAAAAACACATCGCTCATAATCCTGCCGTTCCATCGAAAGTGGTCGGTTACTAACGGGTCTATAGAGTCGGAAAACCAAGCCGCAAGGACGCTCAATTGTCGGGTGCTTGAAACCGCGCCGTGTTCGGTTGGCATTCTTGTGAACCGCGGTCACGTAAAATGCACCAACTCCTCAGTATCACCTGCAGAAACGTATCGAGTTGCATTGGTTTTCATCGGAGGGAGTGACGACTGGGAGGCGCTTATGTTCGCGAAACGCATGCTTAGGGACGCGTGCATTAGCCTGACGGTGATTCGGCTAGTGTACGCGTCCGAGGACAAAGAAAGTTTCACCAAATGGGAGGTGGTGCAGGACAATGAGATGTTGAAGGAAGTAAGGCATAATGGTACAGGGTACGTGAGTTATGTAGAAGAACACGTGGCCGACAGCACTCAAACGACAAGGAAAATACGGTCGTTGATGGACGAGGATGAATACGACCTGTACATAGTCGGGAGAAGATACAATATGAGAAGCCCTCAGACATTGGGTCTTGAGCAATGGAGTGAGTTCCCTGAACTTGGTGTCATTGGCGACATGCTTGCCTCGGCGGATTATTGCTGCAAATTCAGTGTGTTGGTGATTCAGCATCAGCAACAAGGGACTAGCTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

803

Amino Acids

89.6

Weight (kDa)

7.56

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	66 - 452	4e-31	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	511 - 637	3e-13	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	652 - 795	2.6e-07	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44900 AT5G22900
fragaria_vesca	FvH4_3g06341 FvH4_3g23050 FvH4_3g39831 FvH4_6g14510 FvH4_7g14610
malus_domestica	MD02G1295300.v1.1 MD03G1057300.v1.1 MD05G1291400.v1.1 MD10G1267300.v1.1 MD11G1059200.v1.1 MD14G1082300.v1.1
prunus_persica	Prupe.1G346300_v2.0.a1 Prupe.2G029000_v2.0.a1 Prupe.4G074200_v2.0.a1 Prupe.6G047400_v2.0.a1 Prupe.6G047500_v2.0.a1 Prupe.6G047600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0356111 RchiOBHm_Chr1g0356121 RchiOBHm_Chr4g0446581 RchiOBHm_Chr5g0071781
rosa_laevigata	RLG00000005649 RLG00000028106 RLG00000036246 RLG00000036247 RLG00000036248
rosa_multiflora	Rmu_sc0001113.1_g000009 Rmu_sc0002569.1_g000023 Rmu_sc0003229.1_g000013 Rmu_sc0036166.1_g000001 Rmu_ssc0000144.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009380 Rroxscaffold_1G00009410 Rroxscaffold_4G00299800 Rroxscaffold_5G00386970
rosa_rugosa	Rorug04G0372400 Rorug05G0414600 Rorug05G0414700
rosa_samantha	Rh1AG262500 Rh1BG231000 Rh1CG245800 Rh4AG434100 Rh4BG443300 Rh4CG460600 Rh4DG442100 Rh5AG470700 Rh5BG490400 Rh5CG514400 Rh5DG501400 Rh5DG501600 Rh5DG501700
rosa_wichuraiana	Rw1G023190 Rw4G037110 Rw5G043740 Rw5G043750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1945
AasI	GACNNNNNNGTC	1 cut(s)	1016
Acc36I	ACCTGC	1 cut(s)	1945
AccB1I	GGYRCC	2 cut(s)	478, 1115
AccBSI	CCGCTC	1 cut(s)	245
AccI	GTMKAC	1 cut(s)	593
AccII	CGCG	8 cut(s)	49, 539, 1748, 1871, 1902, 2006, 2027, 2063
AclWI	GGATC	4 cut(s)	289, 622, 904, 1364
AcoI	YGGCCR	2 cut(s)	646, 2175
AcsI	RAATTY	4 cut(s)	164, 1151, 1440, 2360
AcuI	CTGAAG	2 cut(s)	373, 861
AcvI	CACGTG	1 cut(s)	2173
AfaI	GTAC	9 cut(s)	354, 1361, 1367, 1625, 1727, 2060, 2143, 2150, 2240
AfiI	CCNNNNNNNGG	8 cut(s)	160, 520, 525, 856, 983, 1062, 1750, 2315
AflIII	ACRYGT	4 cut(s)	1722, 2025, 2061, 2170
AgsI	TTSAA	4 cut(s)	63, 170, 1865, 2122
AhdI	GACNNNNNGTC	1 cut(s)	2283
AhlI	ACTAGT	1 cut(s)	89
AjiI	CACGTC	1 cut(s)	1053
AjnI	CCWGG	1 cut(s)	518
AleI	CACNNNNGTG	1 cut(s)	918
Alw21I	GWGCWC	3 cut(s)	624, 927, 1437
AlwI	GGATC	4 cut(s)	289, 622, 904, 1364
Ama87I	CYCGRG	1 cut(s)	1512
AoxI	GGCC	6 cut(s)	226, 646, 941, 974, 1528, 2175
ApaI	GGGCCC	1 cut(s)	978
ApeKI	GCWGC	6 cut(s)	505, 553, 846, 1157, 1253, 2355
ApoI	RAATTY	4 cut(s)	164, 1151, 1440, 2360
ArsI	GACNNNNNNTTYG	2 cut(s)	1227, 1259
AspLEI	GCGC	3 cut(s)	1750, 1873, 1996
AspS9I	GGNCC	4 cut(s)	528, 941, 974, 975
AvaI	CYCGRG	1 cut(s)	1512
AvaII	GGWCC	1 cut(s)	528
BaeGI	GKGCMC	2 cut(s)	978, 1508
BaeI	ACNNNNGTAYC	2 cut(s)	2140, 2173
BanI	GGYRCC	2 cut(s)	478, 1115
BanII	GRGCYC	5 cut(s)	624, 927, 978, 1437, 1609
BarI	GAAGNNNNNNTAC	2 cut(s)	1349, 1381
BauI	CACGAG	1 cut(s)	1501
BbrPI	CACGTG	1 cut(s)	2173
BbsI	GAAGAC	1 cut(s)	1675
Bbv12I	GWGCWC	3 cut(s)	624, 927, 1437
BbvI	GCAGC	6 cut(s)	492, 565, 858, 1169, 1240, 2342
BccI	CCATC	7 cut(s)	965, 1271, 1487, 1532, 1720, 1794, 2209
BceAI	ACGGC	4 cut(s)	475, 1716, 1765, 1858
BciT130I	CCWGG	1 cut(s)	520
BciVI	GTATCC	1 cut(s)	1084
BcuI	ACTAGT	1 cut(s)	89
BfaI	CTAG	5 cut(s)	90, 983, 1556, 2054, 2400
BfmI	CTRYAG	2 cut(s)	1815, 1938
BfoI	RGCGCY	1 cut(s)	1997
BfuAI	ACCTGC	1 cut(s)	1945
BfuI	GTATCC	1 cut(s)	1084
BglI	GCCNNNNNGGC	3 cut(s)	973, 1198, 1527
BisI	GCNGC	8 cut(s)	243, 506, 554, 847, 1158, 1254, 1836, 2356
BlsI	GCNGC	8 cut(s)	244, 507, 555, 848, 1159, 1255, 1837, 2357
BmcAI	AGTACT	2 cut(s)	354, 1361
Bme1390I	CCNGG	1 cut(s)	520
Bme18I	GGWCC	1 cut(s)	528
BmeRI	GACNNNNNGTC	1 cut(s)	2283
BmeT110I	CYCGRG	1 cut(s)	1512
BmgBI	CACGTC	1 cut(s)	1053
BmgT120I	GGNCC	4 cut(s)	528, 941, 974, 975
BmiI	GGNNCC	5 cut(s)	480, 588, 976, 977, 1117
BmrFI	CCNGG	1 cut(s)	520
BmrI	ACTGGG	3 cut(s)	149, 227, 1996
BmsI	GCATC	8 cut(s)	89, 119, 265, 727, 1179, 1461, 1486, 2392
BmuI	ACTGGG	3 cut(s)	149, 227, 1996
BpiI	GAAGAC	1 cut(s)	1675
BplI	GAGNNNNNCTC	2 cut(s)	2257, 2289
Bpu10I	CCTNAGC	1 cut(s)	2018
BpuEI	CTTGAG	3 cut(s)	608, 1165, 2309
Bsa29I	ATCGAT	1 cut(s)	1494
BsaAI	YACGTR	3 cut(s)	1909, 2152, 2173
BsaBI	GATNNNNATC	3 cut(s)	427, 773, 935
BsaJI	CCNNGG	6 cut(s)	268, 471, 519, 1900, 2067, 2340
Bsc4I	CCNNNNNNNGG	8 cut(s)	160, 520, 525, 856, 983, 1062, 1750, 2315
Bse118I	RCCGGY	2 cut(s)	491, 648
Bse1I	ACTGG	6 cut(s)	155, 233, 920, 1037, 1218, 1991
Bse3DI	GCAATG	4 cut(s)	579, 600, 690, 2300
Bse8I	GATNNNNATC	3 cut(s)	427, 773, 935
BseBI	CCWGG	1 cut(s)	520
BseCI	ATCGAT	1 cut(s)	1494
BseDI	CCNNGG	6 cut(s)	268, 471, 519, 1900, 2067, 2340
BseGI	GGATG	5 cut(s)	19, 876, 1638, 1712, 2230
BseJI	GATNNNNATC	3 cut(s)	427, 773, 935
BseLI	CCNNNNNNNGG	8 cut(s)	160, 520, 525, 856, 983, 1062, 1750, 2315
BseMI	GCAATG	4 cut(s)	579, 600, 690, 2300
BseMII	CTCAG	2 cut(s)	1941, 2288
BseNI	ACTGG	6 cut(s)	155, 233, 920, 1037, 1218, 1991
BseRI	GAGGAG	2 cut(s)	602, 1915
BseSI	GKGCMC	2 cut(s)	978, 1508
BseXI	GCAGC	6 cut(s)	492, 565, 858, 1169, 1240, 2342
BsgI	GTGCAG	2 cut(s)	572, 2123
Bsh1236I	CGCG	8 cut(s)	49, 539, 1748, 1871, 1902, 2006, 2027, 2063
Bsh1285I	CGRYCG	2 cut(s)	933, 2210
BshFI	GGCC	6 cut(s)	228, 648, 943, 976, 1530, 2177
BshNI	GGYRCC	2 cut(s)	478, 1115
BshVI	ATCGAT	1 cut(s)	1494
BsiEI	CGRYCG	2 cut(s)	933, 2210
BsiHKAI	GWGCWC	3 cut(s)	624, 927, 1437
BsiHKCI	CYCGRG	1 cut(s)	1512
BsiSI	CCGG	3 cut(s)	492, 649, 1091
BslFI	GGGAC	2 cut(s)	770, 2036
BslI	CCNNNNNNNGG	8 cut(s)	160, 520, 525, 856, 983, 1062, 1750, 2315
BsmFI	GGGAC	2 cut(s)	770, 2036
BsmI	GAATGC	2 cut(s)	82, 1887
BsnI	GGCC	6 cut(s)	228, 648, 943, 976, 1530, 2177
BsoBI	CYCGRG	1 cut(s)	1512
Bsp120I	GGGCCC	1 cut(s)	974
Bsp1286I	GDGCHC	6 cut(s)	624, 927, 978, 1437, 1508, 1609
Bsp1407I	TGTACA	1 cut(s)	2238
Bsp143I	GATC	8 cut(s)	294, 399, 627, 896, 930, 936, 948, 1369
Bsp68I	TCGCGA	1 cut(s)	2006
BspANI	GGCC	6 cut(s)	228, 648, 943, 976, 1530, 2177
BspCNI	CTCAG	2 cut(s)	1940, 2287
BspDI	ATCGAT	1 cut(s)	1494
BspFNI	CGCG	8 cut(s)	49, 539, 1748, 1871, 1902, 2006, 2027, 2063
BspLI	GGNNCC	5 cut(s)	480, 588, 976, 977, 1117
BspMAI	CTGCAG	1 cut(s)	1942
BspMI	ACCTGC	1 cut(s)	1945
BspPI	GGATC	4 cut(s)	289, 622, 904, 1364
BspQI	GCTCTTC	1 cut(s)	515
BspT107I	GGYRCC	2 cut(s)	478, 1115
BsrBI	CCGCTC	1 cut(s)	245
BsrDI	GCAATG	4 cut(s)	579, 600, 690, 2300
BsrFI	RCCGGY	2 cut(s)	491, 648
BsrGI	TGTACA	1 cut(s)	2238
BsrI	ACTGG	6 cut(s)	155, 233, 920, 1037, 1218, 1991
BssAI	RCCGGY	2 cut(s)	491, 648
BssECI	CCNNGG	6 cut(s)	268, 471, 519, 1900, 2067, 2340
BssMI	GATC	8 cut(s)	294, 399, 627, 896, 930, 936, 948, 1369
BssSI	CACGAG	1 cut(s)	1501
BssT1I	CCWWGG	2 cut(s)	268, 471
Bst2BI	CACGAG	1 cut(s)	1501
Bst2UI	CCWGG	1 cut(s)	520
Bst4CI	ACNGT	8 cut(s)	40, 372, 598, 706, 1072, 1321, 2044, 2208
Bst6I	CTCTTC	2 cut(s)	392, 515
BstAUI	TGTACA	1 cut(s)	2238
BstBAI	YACGTR	3 cut(s)	1909, 2152, 2173
BstDEI	CTNAG	6 cut(s)	952, 1078, 1374, 1927, 2018, 2274
BstDSI	CCRYGG	1 cut(s)	1900
BstENI	CCTNNNNNAGG	1 cut(s)	1060
BstF5I	GGATG	5 cut(s)	19, 876, 1638, 1712, 2230
BstFNI	CGCG	8 cut(s)	49, 539, 1748, 1871, 1902, 2006, 2027, 2063
BstH2I	RGCGCY	1 cut(s)	1997
BstHHI	GCGC	3 cut(s)	1750, 1873, 1996
BstKTI	GATC	8 cut(s)	297, 402, 630, 899, 933, 939, 951, 1372
BstMBI	GATC	8 cut(s)	294, 399, 627, 896, 930, 936, 948, 1369
BstMCI	CGRYCG	2 cut(s)	933, 2210
BstMWI	GCNNNNNNNGC	3 cut(s)	973, 1198, 1527
BstNI	CCWGG	1 cut(s)	520
BstNSI	RCATGY	6 cut(s)	1205, 1452, 1694, 1726, 2017, 2335
BstSCI	CCNGG	1 cut(s)	518
BstSFI	CTRYAG	2 cut(s)	1815, 1938
BstSLI	GKGCMC	2 cut(s)	978, 1508
BstUI	CGCG	8 cut(s)	49, 539, 1748, 1871, 1902, 2006, 2027, 2063
BstV1I	GCAGC	6 cut(s)	492, 565, 858, 1169, 1240, 2342
BstV2I	GAAGAC	1 cut(s)	1675
BstX2I	RGATCY	2 cut(s)	627, 896
BstYI	RGATCY	2 cut(s)	627, 896
Bsu15I	ATCGAT	1 cut(s)	1494
BsuI	GTATCC	1 cut(s)	1084
BsuRI	GGCC	6 cut(s)	228, 648, 943, 976, 1530, 2177
BsuTUI	ATCGAT	1 cut(s)	1494
BtgI	CCRYGG	1 cut(s)	1900
BtgZI	GCGATG	3 cut(s)	96, 1249, 1749
BtrI	CACGTC	1 cut(s)	1053
BtsCI	GGATG	5 cut(s)	19, 876, 1638, 1712, 2230
BtsI	GCAGTG	2 cut(s)	969, 1212
BtsIMutI	CAGTG	7 cut(s)	240, 368, 913, 969, 1211, 1212, 2371
BtuMI	TCGCGA	1 cut(s)	2006
BveI	ACCTGC	1 cut(s)	1945
CfoI	GCGC	3 cut(s)	1750, 1873, 1996
Cfr10I	RCCGGY	2 cut(s)	491, 648
Cfr13I	GGNCC	4 cut(s)	528, 941, 974, 975
Cfr42I	CCGCGG	1 cut(s)	1903
ClaI	ATCGAT	1 cut(s)	1494
CseI	GACGC	4 cut(s)	38, 1852, 2033, 2052
Csp6I	GTAC	9 cut(s)	353, 1360, 1366, 1624, 1726, 2059, 2142, 2149, 2239
CviAII	CATG	9 cut(s)	741, 751, 1033, 1202, 1449, 1691, 1723, 2014, 2332
CviQI	GTAC	9 cut(s)	353, 1360, 1366, 1624, 1726, 2059, 2142, 2149, 2239
DdeI	CTNAG	6 cut(s)	952, 1078, 1374, 1927, 2018, 2274
DpnI	GATC	8 cut(s)	296, 401, 629, 898, 932, 938, 950, 1371
DpnII	GATC	8 cut(s)	294, 399, 627, 896, 930, 936, 948, 1369
DrdI	GACNNNNNNGTC	1 cut(s)	1016
DriI	GACNNNNNGTC	1 cut(s)	2283
DseDI	GACNNNNNNGTC	1 cut(s)	1016
EaeI	YGGCCR	2 cut(s)	646, 2175
Eam1104I	CTCTTC	2 cut(s)	392, 515
Eam1105I	GACNNNNNGTC	1 cut(s)	2283
EarI	CTCTTC	2 cut(s)	392, 515
EciI	GGCGGA	1 cut(s)	2360
Ecl136II	GAGCTC	3 cut(s)	622, 925, 1435
Eco130I	CCWWGG	2 cut(s)	268, 471
Eco24I	GRGCYC	5 cut(s)	624, 927, 978, 1437, 1609
Eco47I	GGWCC	1 cut(s)	528
Eco53kI	GAGCTC	3 cut(s)	622, 925, 1435
Eco57I	CTGAAG	2 cut(s)	373, 861
Eco72I	CACGTG	1 cut(s)	2173
Eco88I	CYCGRG	1 cut(s)	1512
EcoICRI	GAGCTC	3 cut(s)	622, 925, 1435
EcoNI	CCTNNNNNAGG	1 cut(s)	1060
EcoO109I	RGGNCCY	1 cut(s)	975
EcoRI	GAATTC	1 cut(s)	1440
EcoRII	CCWGG	1 cut(s)	518
EcoT14I	CCWWGG	2 cut(s)	268, 471
EcoT22I	ATGCAT	5 cut(s)	82, 112, 579, 742, 1454
EcoT38I	GRGCYC	5 cut(s)	624, 927, 978, 1437, 1609
ErhI	CCWWGG	2 cut(s)	268, 471
FaeI	CATG	9 cut(s)	744, 754, 1036, 1205, 1452, 1694, 1726, 2017, 2335
FalI	AAGNNNNNCTT	2 cut(s)	995, 1027
FaqI	GGGAC	2 cut(s)	770, 2036
FatI	CATG	9 cut(s)	740, 750, 1032, 1201, 1448, 1690, 1722, 2013, 2331
FauI	CCCGC	1 cut(s)	1483
FauNDI	CATATG	2 cut(s)	71, 1308
FblI	GTMKAC	1 cut(s)	593
Fnu4HI	GCNGC	8 cut(s)	243, 506, 554, 847, 1158, 1254, 1836, 2356
FokI	GGATG	5 cut(s)	6, 863, 1625, 1699, 2237
FriOI	GRGCYC	5 cut(s)	624, 927, 978, 1437, 1609
Fsp4HI	GCNGC	8 cut(s)	243, 506, 554, 847, 1158, 1254, 1836, 2356
FspBI	CTAG	5 cut(s)	90, 983, 1556, 2054, 2400
GlaI	GCGC	3 cut(s)	1749, 1872, 1995
GluI	GCNGC	8 cut(s)	243, 506, 554, 847, 1158, 1254, 1836, 2356
HaeII	RGCGCY	1 cut(s)	1997
HaeIII	GGCC	6 cut(s)	228, 648, 943, 976, 1530, 2177
HapII	CCGG	3 cut(s)	492, 649, 1091
HgaI	GACGC	4 cut(s)	38, 1852, 2033, 2052
HhaI	GCGC	3 cut(s)	1750, 1873, 1996
Hin1II	CATG	9 cut(s)	744, 754, 1036, 1205, 1452, 1694, 1726, 2017, 2335
Hin6I	GCGC	3 cut(s)	1748, 1871, 1994
HinP1I	GCGC	3 cut(s)	1748, 1871, 1994
HincII	GTYRAC	1 cut(s)	468
HindII	GTYRAC	1 cut(s)	468
HindIII	AAGCTT	1 cut(s)	1004
HpaI	GTTAAC	1 cut(s)	468
HpaII	CCGG	3 cut(s)	492, 649, 1091
Hpy166II	GTNNAC	5 cut(s)	468, 594, 1317, 1897, 2059
Hpy188I	TCNGA	9 cut(s)	404, 440, 1432, 1439, 1630, 1825, 1973, 2068, 2277
Hpy8I	GTNNAC	5 cut(s)	468, 594, 1317, 1897, 2059
Hpy99I	CGWCG	4 cut(s)	54, 715, 1733, 1736
HpyAV	CCTTC	4 cut(s)	836, 1095, 1418, 2116
HpyCH4III	ACNGT	8 cut(s)	40, 372, 598, 706, 1072, 1321, 2044, 2208
HpyCH4IV	ACGT	9 cut(s)	360, 713, 1052, 1536, 1734, 1908, 1946, 2151, 2172
HpyF10VI	GCNNNNNNNGC	3 cut(s)	973, 1198, 1527
HpyF3I	CTNAG	6 cut(s)	952, 1078, 1374, 1927, 2018, 2274
HpySE526I	ACGT	9 cut(s)	360, 713, 1052, 1536, 1734, 1908, 1946, 2151, 2172
Hsp92II	CATG	9 cut(s)	744, 754, 1036, 1205, 1452, 1694, 1726, 2017, 2335
HspAI	GCGC	3 cut(s)	1748, 1871, 1994
KroI	GCCGGC	2 cut(s)	491, 648
KroNI	GCCGGC	2 cut(s)	493, 650
KspAI	GTTAAC	1 cut(s)	468
KspI	CCGCGG	1 cut(s)	1903
Kzo9I	GATC	8 cut(s)	294, 399, 627, 896, 930, 936, 948, 1369
LguI	GCTCTTC	1 cut(s)	515
LmnI	GCTCC	6 cut(s)	120, 592, 930, 986, 1432, 1440
Lsp1109I	GCAGC	6 cut(s)	492, 565, 858, 1169, 1240, 2342
LweI	GCATC	8 cut(s)	89, 119, 265, 727, 1179, 1461, 1486, 2392
MaeI	CTAG	5 cut(s)	90, 983, 1556, 2054, 2400
MaeII	ACGT	9 cut(s)	360, 713, 1052, 1536, 1734, 1908, 1946, 2151, 2172
MalI	GATC	8 cut(s)	296, 401, 629, 898, 932, 938, 950, 1371
MbiI	CCGCTC	1 cut(s)	245
MboI	GATC	8 cut(s)	294, 399, 627, 896, 930, 936, 948, 1369
MboII	GAAGA	9 cut(s)	379, 502, 654, 865, 1532, 1675, 1685, 2177, 2265
MfeI	CAATTG	2 cut(s)	1335, 1849
MflI	RGATCY	2 cut(s)	627, 896
MhlI	GDGCHC	6 cut(s)	624, 927, 978, 1437, 1508, 1609
MluI	ACGCGT	2 cut(s)	2025, 2061
MlyI	GAGTC	5 cut(s)	169, 414, 1165, 1504, 1829
MmeI	TCCRAC	2 cut(s)	322, 1803
Mph1103I	ATGCAT	5 cut(s)	82, 112, 579, 742, 1454
MroNI	GCCGGC	2 cut(s)	491, 648
MseI	TTAA	8 cut(s)	57, 105, 467, 500, 533, 855, 1302, 1580
MslI	CAYNNNNRTG	3 cut(s)	764, 918, 1892
MspA1I	CMGCKG	1 cut(s)	1902
MspI	CCGG	3 cut(s)	492, 649, 1091
MspR9I	CCNGG	1 cut(s)	520
MunI	CAATTG	2 cut(s)	1335, 1849
Mva1269I	GAATGC	2 cut(s)	82, 1887
MvaI	CCWGG	1 cut(s)	520
MvnI	CGCG	8 cut(s)	49, 539, 1748, 1871, 1902, 2006, 2027, 2063
MwoI	GCNNNNNNNGC	3 cut(s)	973, 1198, 1527
NaeI	GCCGGC	2 cut(s)	493, 650
NdeI	CATATG	2 cut(s)	71, 1308
NdeII	GATC	8 cut(s)	294, 399, 627, 896, 930, 936, 948, 1369
NgoMIV	GCCGGC	2 cut(s)	491, 648
NlaIII	CATG	9 cut(s)	744, 754, 1036, 1205, 1452, 1694, 1726, 2017, 2335
NlaIV	GGNNCC	5 cut(s)	480, 588, 976, 977, 1117
NmeAIII	GCCGAG	1 cut(s)	2321
NmuCI	GTSAC	6 cut(s)	25, 190, 1045, 1168, 1904, 1979
NruI	TCGCGA	1 cut(s)	2006
NsiI	ATGCAT	5 cut(s)	82, 112, 579, 742, 1454
NspI	RCATGY	6 cut(s)	1205, 1452, 1694, 1726, 2017, 2335
OliI	CACNNNNGTG	1 cut(s)	918
PaeI	GCATGC	3 cut(s)	1205, 1452, 2017
PaeR7I	CTCGAG	1 cut(s)	1512
PaqCI	CACCTGC	1 cut(s)	1945
PciI	ACATGT	1 cut(s)	1722
PciSI	GCTCTTC	1 cut(s)	515
PcsI	WCGNNNNNNNCGW	1 cut(s)	1533
PctI	GAATGC	2 cut(s)	82, 1887
PdiI	GCCGGC	2 cut(s)	493, 650
PfeI	GAWTC	6 cut(s)	13, 322, 378, 860, 2047, 2377
PflFI	GACNNNGTC	2 cut(s)	545, 1051
PkrI	GCNGC	8 cut(s)	244, 507, 555, 848, 1159, 1255, 1837, 2357
Ple19I	CGATCG	1 cut(s)	933
PleI	GAGTC	5 cut(s)	169, 413, 1165, 1504, 1828
PmaCI	CACGTG	1 cut(s)	2173
PmlI	CACGTG	1 cut(s)	2173
PpsI	GAGTC	5 cut(s)	169, 413, 1165, 1504, 1828
Ppu21I	YACGTR	3 cut(s)	1909, 2152, 2173
PscI	ACATGT	1 cut(s)	1722
Psp124BI	GAGCTC	3 cut(s)	624, 927, 1437
Psp6I	CCWGG	1 cut(s)	518
PspCI	CACGTG	1 cut(s)	2173
PspGI	CCWGG	1 cut(s)	518
PspN4I	GGNNCC	5 cut(s)	480, 588, 976, 977, 1117
PspOMI	GGGCCC	1 cut(s)	974
PspPI	GGNCC	4 cut(s)	528, 941, 974, 975
PstI	CTGCAG	1 cut(s)	1942
PsuI	RGATCY	2 cut(s)	627, 896
PsyI	GACNNNGTC	2 cut(s)	545, 1051
PvuI	CGATCG	1 cut(s)	933
RruI	TCGCGA	1 cut(s)	2006
RsaI	GTAC	9 cut(s)	354, 1361, 1367, 1625, 1727, 2060, 2143, 2150, 2240
RsaNI	GTAC	9 cut(s)	353, 1360, 1366, 1624, 1726, 2059, 2142, 2149, 2239
RseI	CAYNNNNRTG	3 cut(s)	764, 918, 1892
SacI	GAGCTC	3 cut(s)	624, 927, 1437
SacII	CCGCGG	1 cut(s)	1903
SapI	GCTCTTC	1 cut(s)	515
SaqAI	TTAA	8 cut(s)	57, 105, 467, 500, 533, 855, 1302, 1580
SatI	GCNGC	8 cut(s)	243, 506, 554, 847, 1158, 1254, 1836, 2356
Sau3AI	GATC	8 cut(s)	294, 399, 627, 896, 930, 936, 948, 1369
Sau96I	GGNCC	4 cut(s)	528, 941, 974, 975
ScaI	AGTACT	2 cut(s)	354, 1361
SchI	GAGTC	5 cut(s)	169, 414, 1165, 1504, 1829
ScrFI	CCNGG	1 cut(s)	520
SduI	GDGCHC	6 cut(s)	624, 927, 978, 1437, 1508, 1609
SfaNI	GCATC	8 cut(s)	89, 119, 265, 727, 1179, 1461, 1486, 2392
SfcI	CTRYAG	2 cut(s)	1815, 1938
Sfr274I	CTCGAG	1 cut(s)	1512
Sfr303I	CCGCGG	1 cut(s)	1903
SgrBI	CCGCGG	1 cut(s)	1903
SinI	GGWCC	1 cut(s)	528
SlaI	CTCGAG	1 cut(s)	1512
SmiMI	CAYNNNNRTG	3 cut(s)	764, 918, 1892
SmlI	CTYRAG	4 cut(s)	623, 1144, 1512, 2288
SmoI	CTYRAG	4 cut(s)	623, 1144, 1512, 2288
SpeI	ACTAGT	1 cut(s)	89
SphI	GCATGC	3 cut(s)	1205, 1452, 2017
SspMI	CTAG	5 cut(s)	90, 983, 1556, 2054, 2400
SstI	GAGCTC	3 cut(s)	624, 927, 1437
StyD4I	CCNGG	1 cut(s)	518
StyI	CCWWGG	2 cut(s)	268, 471
TaaI	ACNGT	8 cut(s)	40, 372, 598, 706, 1072, 1321, 2044, 2208
TaiI	ACGT	9 cut(s)	363, 716, 1055, 1539, 1737, 1911, 1949, 2154, 2175
TaqI	TCGA	7 cut(s)	1245, 1494, 1513, 1551, 1564, 1789, 1951
TatI	WGTACW	3 cut(s)	352, 1359, 2238
TauI	GCSGC	2 cut(s)	245, 1838
TfiI	GAWTC	6 cut(s)	13, 322, 378, 860, 2047, 2377
Tru1I	TTAA	8 cut(s)	57, 105, 467, 500, 533, 855, 1302, 1580
Tru9I	TTAA	8 cut(s)	57, 105, 467, 500, 533, 855, 1302, 1580
TscAI	CASTG	7 cut(s)	240, 375, 920, 969, 1212, 1218, 2371
TseFI	GTSAC	6 cut(s)	25, 190, 1045, 1168, 1904, 1979
TseI	GCWGC	6 cut(s)	505, 553, 846, 1157, 1253, 2355
Tsp45I	GTSAC	6 cut(s)	25, 190, 1045, 1168, 1904, 1979
TspDTI	ATGAA	9 cut(s)	5, 17, 852, 865, 1021, 1676, 1686, 1957, 2241
TspGWI	ACGGA	5 cut(s)	123, 579, 794, 1564, 1631
TspRI	CASTG	7 cut(s)	240, 375, 920, 969, 1212, 1218, 2371
Tth111I	GACNNNGTC	2 cut(s)	545, 1051
VpaK11BI	GGWCC	1 cut(s)	528
XagI	CCTNNNNNAGG	1 cut(s)	1060
XapI	RAATTY	4 cut(s)	164, 1151, 1440, 2360
XceI	RCATGY	6 cut(s)	1205, 1452, 1694, 1726, 2017, 2335
XcmI	CCANNNNNNNNNTGG	2 cut(s)	816, 2095
XhoI	CTCGAG	1 cut(s)	1512
XmiI	GTMKAC	1 cut(s)	593
XspI	CTAG	5 cut(s)	90, 983, 1556, 2054, 2400
ZrmI	AGTACT	2 cut(s)	354, 1361
Zsp2I	ATGCAT	5 cut(s)	82, 112, 579, 742, 1454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.