Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001192

Physical Location & Seq

Genomic Coordinates Reverse (-)

48638001 .. 48638678

Gene Structure 678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58150

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCAAGAAGACGTATGCACACTTGCAATGGACAAGCACACATCCCTTATTGTGCTCCCGTTTCATCGAACATGGGCGATTGACGGGTCTATTGAGTCAGACGACAATGCAACAAGGACACTAAATCGCAATGTACTCGAAAGAGCTCCTTGCTCGGTAGGCATCCTTGTGGACCGTGGCCATTTAGGCCTGTCCACCTCTGTTGTGGCTTCCGCACAATCATTTTCCGTGGGTGTAATCTTCTTCGGTGGGGAAGACGATAGGGAGGCATTAACATTTGCAAAAAGAATGACCAGCGACTCGGCAATTAGCTTAACTGTGATCCGATTAGTTGCTGTGACTAATGATTTTACTACCGGTGGGGAATGGGATAAAATACTTGATACTGAGTTATTGAAGGAGTTTACACAGAGTCAGGTGGGTGAAGGGTTTGTGACATTTTTAGAGGAGTTGGTGAAAGATGGACCGCAAACAGCATTACTACTAAGGTCTATAGTGGATGAGTATGATCTAATTATAGTTGGGAGAAGGTTTCAGGCAGAGTGCCCTCAGACTGCAGGACTTTCGGAATGGAGTGACTTTCCTGAGCTGGGGACTATAGGAGACCTGCTTGCATCAACTGATTTAAATTGTAAAACTTCAATTCTAGTGATAAAACATCAACTACAGAACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

225

Amino Acids

24.68

Weight (kDa)

4.54

Isoelectric Point (pI)

31.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHX17_2nd	PF23256	3 - 63	4.2e-11	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	74 - 220	1.4e-09	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44900 AT5G22900
fragaria_vesca	FvH4_3g06341 FvH4_3g23050 FvH4_3g39831 FvH4_6g14510 FvH4_7g14610
malus_domestica	MD02G1295300.v1.1 MD03G1057300.v1.1 MD05G1291400.v1.1 MD10G1267300.v1.1 MD11G1059200.v1.1 MD14G1082300.v1.1
prunus_persica	Prupe.1G346300_v2.0.a1 Prupe.2G029000_v2.0.a1 Prupe.4G074200_v2.0.a1 Prupe.6G047400_v2.0.a1 Prupe.6G047500_v2.0.a1 Prupe.6G047600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0356111 RchiOBHm_Chr1g0356121 RchiOBHm_Chr4g0446581 RchiOBHm_Chr5g0071781
rosa_laevigata	RLG00000005649 RLG00000028106 RLG00000036246 RLG00000036247 RLG00000036248
rosa_multiflora	Rmu_sc0001113.1_g000009 Rmu_sc0002569.1_g000023 Rmu_sc0003229.1_g000013 Rmu_sc0036166.1_g000001 Rmu_ssc0000144.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009380 Rroxscaffold_1G00009410 Rroxscaffold_4G00299800 Rroxscaffold_5G00386970
rosa_rugosa	Rorug04G0372400 Rorug05G0414600 Rorug05G0414700
rosa_samantha	Rh1AG262500 Rh1BG231000 Rh1CG245800 Rh4AG434100 Rh4BG443300 Rh4CG460600 Rh4DG442100 Rh5AG470700 Rh5BG490400 Rh5CG514400 Rh5DG501400 Rh5DG501600 Rh5DG501700
rosa_wichuraiana	Rw1G023190 Rw4G037110 Rw5G043740 Rw5G043750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	615
AciI	CCGC	2 cut(s)	213, 467
AclWI	GGATC	1 cut(s)	316
AcoI	YGGCCR	1 cut(s)	178
AfaI	GTAC	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	590
AgeI	ACCGGT	1 cut(s)	356
AgsI	TTSAA	2 cut(s)	397, 642
AluBI	AGCT	3 cut(s)	146, 312, 589
AluI	AGCT	3 cut(s)	146, 312, 589
Alw21I	GWGCWC	2 cut(s)	57, 148
Alw26I	GTCTC	1 cut(s)	597
AlwI	GGATC	1 cut(s)	316
AoxI	GGCC	2 cut(s)	178, 187
AsiGI	ACCGGT	1 cut(s)	356
AspS9I	GGNCC	2 cut(s)	172, 464
AsuHPI	GGTGA	2 cut(s)	434, 466
AvaII	GGWCC	2 cut(s)	172, 464
BaeGI	GKGCMC	1 cut(s)	548
BalI	TGGCCA	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	148
BbsI	GAAGAC	2 cut(s)	15, 261
Bbv12I	GWGCWC	2 cut(s)	57, 148
BccI	CCATC	1 cut(s)	455
BcgI	CGANNNNNNTGC	4 cut(s)	118, 152, 546, 580
BcoDI	GTCTC	1 cut(s)	597
BfaI	CTAG	1 cut(s)	647
BfmI	CTRYAG	4 cut(s)	492, 555, 597, 665
BfuAI	ACCTGC	1 cut(s)	615
BglI	GCCNNNNNGGC	1 cut(s)	186
Bme18I	GGWCC	2 cut(s)	172, 464
BmgT120I	GGNCC	2 cut(s)	172, 464
BmsI	GCATC	2 cut(s)	171, 623
BpiI	GAAGAC	2 cut(s)	15, 261
Bpu10I	CCTNAGC	1 cut(s)	585
BsaI	GGTCTC	1 cut(s)	597
BsaJI	CCNNGG	2 cut(s)	175, 228
BsaWI	WCCGGW	1 cut(s)	356
Bsc4I	CCNNNNNNNGG	1 cut(s)	590
Bse118I	RCCGGY	1 cut(s)	356
Bse3DI	GCAATG	2 cut(s)	33, 136
BseDI	CCNNGG	2 cut(s)	175, 228
BseGI	GGATG	3 cut(s)	41, 162, 505
BseLI	CCNNNNNNNGG	1 cut(s)	590
BseMI	GCAATG	2 cut(s)	33, 136
BseMII	CTCAG	3 cut(s)	378, 563, 576
BseRI	GAGGAG	1 cut(s)	461
BseSI	GKGCMC	1 cut(s)	548
BseYI	CCCAGC	1 cut(s)	589
BshFI	GGCC	2 cut(s)	180, 189
BshTI	ACCGGT	1 cut(s)	356
BsiHKAI	GWGCWC	2 cut(s)	57, 148
BsiSI	CCGG	1 cut(s)	357
BslFI	GGGAC	1 cut(s)	607
BslI	CCNNNNNNNGG	1 cut(s)	590
BsmAI	GTCTC	1 cut(s)	597
BsmFI	GGGAC	1 cut(s)	607
BsnI	GGCC	2 cut(s)	180, 189
Bso31I	GGTCTC	1 cut(s)	597
Bsp1286I	GDGCHC	3 cut(s)	57, 148, 548
Bsp143I	GATC	2 cut(s)	321, 508
BspACI	CCGC	2 cut(s)	213, 467
BspANI	GGCC	2 cut(s)	180, 189
BspCNI	CTCAG	3 cut(s)	379, 562, 577
BspMAI	CTGCAG	1 cut(s)	559
BspMI	ACCTGC	1 cut(s)	615
BspPI	GGATC	1 cut(s)	316
BspTNI	GGTCTC	1 cut(s)	597
BsrDI	GCAATG	2 cut(s)	33, 136
BsrFI	RCCGGY	1 cut(s)	356
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	2 cut(s)	175, 228
BssMI	GATC	2 cut(s)	321, 508
Bst4CI	ACNGT	2 cut(s)	176, 319
BstC8I	GCNNGC	1 cut(s)	612
BstDEI	CTNAG	4 cut(s)	387, 485, 549, 585
BstDSI	CCRYGG	2 cut(s)	175, 228
BstF5I	GGATG	3 cut(s)	41, 162, 505
BstKTI	GATC	2 cut(s)	324, 511
BstMAI	GTCTC	1 cut(s)	597
BstMBI	GATC	2 cut(s)	321, 508
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 186
BstSFI	CTRYAG	4 cut(s)	492, 555, 597, 665
BstSLI	GKGCMC	1 cut(s)	548
BstV2I	GAAGAC	2 cut(s)	15, 261
BsuRI	GGCC	2 cut(s)	180, 189
BtgI	CCRYGG	2 cut(s)	175, 228
BtsCI	GGATG	3 cut(s)	41, 162, 505
BveI	ACCTGC	1 cut(s)	615
Cac8I	GCNNGC	1 cut(s)	612
Cfr10I	RCCGGY	1 cut(s)	356
Cfr13I	GGNCC	2 cut(s)	172, 464
Csp6I	GTAC	1 cut(s)	134
CspAI	ACCGGT	1 cut(s)	356
CspCI	CAANNNNNGTGG	2 cut(s)	184, 219
CviAII	CATG	1 cut(s)	72
CviJI	RGCY	6 cut(s)	146, 180, 189, 209, 312, 589
CviKI_1	RGCY	6 cut(s)	146, 180, 189, 209, 312, 589
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	4 cut(s)	387, 485, 549, 585
DpnI	GATC	2 cut(s)	323, 510
DpnII	GATC	2 cut(s)	321, 508
DraI	TTTAAA	1 cut(s)	627
EaeI	YGGCCR	1 cut(s)	178
Ecl136II	GAGCTC	1 cut(s)	146
Eco147I	AGGCCT	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	597
Eco47I	GGWCC	2 cut(s)	172, 464
Eco53kI	GAGCTC	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	146
EcoT38I	GRGCYC	1 cut(s)	148
FaeI	CATG	1 cut(s)	75
FaiI	YATR	6 cut(s)	16, 73, 494, 507, 518, 599
FalI	AAGNNNNNCTT	2 cut(s)	133, 165
FaqI	GGGAC	1 cut(s)	607
FatI	CATG	1 cut(s)	71
FokI	GGATG	3 cut(s)	28, 149, 512
FriOI	GRGCYC	1 cut(s)	148
FspBI	CTAG	1 cut(s)	647
GsaI	CCCAGC	1 cut(s)	593
HaeIII	GGCC	2 cut(s)	180, 189
HapII	CCGG	1 cut(s)	357
Hin1II	CATG	1 cut(s)	75
HinfI	GANTC	3 cut(s)	95, 299, 412
HpaII	CCGG	1 cut(s)	357
HphI	GGTGA	2 cut(s)	434, 466
Hpy166II	GTNNAC	3 cut(s)	172, 195, 405
Hpy188I	TCNGA	4 cut(s)	100, 326, 552, 568
Hpy188III	TCNNGA	1 cut(s)	584
Hpy8I	GTNNAC	3 cut(s)	172, 195, 405
HpyAV	CCTTC	3 cut(s)	391, 419, 522
HpyCH4III	ACNGT	2 cut(s)	176, 319
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	7 cut(s)	4, 18, 26, 110, 281, 557, 614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 186
HpyF3I	CTNAG	4 cut(s)	387, 485, 549, 585
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	75
Kzo9I	GATC	2 cut(s)	321, 508
LmnI	GCTCC	2 cut(s)	60, 151
LpnPI	CCDG	9 cut(s)	203, 307, 370, 401, 521, 543, 575, 597, 620
LweI	GCATC	2 cut(s)	171, 623
MaeI	CTAG	1 cut(s)	647
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	3 cut(s)	337, 433, 575
MalI	GATC	2 cut(s)	323, 510
MboI	GATC	2 cut(s)	321, 508
MboII	GAAGA	4 cut(s)	20, 232, 235, 266
MhlI	GDGCHC	3 cut(s)	57, 148, 548
MlsI	TGGCCA	1 cut(s)	180
MluCI	AATT	4 cut(s)	306, 513, 628, 642
MluNI	TGGCCA	1 cut(s)	180
MlyI	GAGTC	3 cut(s)	104, 293, 421
MnlI	CCTC	4 cut(s)	208, 259, 439, 558
Mox20I	TGGCCA	1 cut(s)	180
MscI	TGGCCA	1 cut(s)	180
MseI	TTAA	4 cut(s)	272, 314, 626, 676
MslI	CAYNNNNRTG	1 cut(s)	167
Msp20I	TGGCCA	1 cut(s)	180
MspI	CCGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	2 cut(s)	159, 186
NdeII	GATC	2 cut(s)	321, 508
NlaIII	CATG	1 cut(s)	75
NmeAIII	GCCGAG	1 cut(s)	281
NmuCI	GTSAC	3 cut(s)	337, 433, 575
PceI	AGGCCT	1 cut(s)	189
PinAI	ACCGGT	1 cut(s)	356
PleI	GAGTC	3 cut(s)	103, 293, 420
PpsI	GAGTC	3 cut(s)	103, 293, 420
Psp124BI	GAGCTC	1 cut(s)	148
PspFI	CCCAGC	1 cut(s)	589
PspPI	GGNCC	2 cut(s)	172, 464
PstI	CTGCAG	1 cut(s)	559
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
RseI	CAYNNNNRTG	1 cut(s)	167
SacI	GAGCTC	1 cut(s)	148
SaqAI	TTAA	4 cut(s)	272, 314, 626, 676
Sau3AI	GATC	2 cut(s)	321, 508
Sau96I	GGNCC	2 cut(s)	172, 464
SchI	GAGTC	3 cut(s)	104, 293, 421
SduI	GDGCHC	3 cut(s)	57, 148, 548
SetI	ASST	9 cut(s)	15, 148, 200, 314, 420, 491, 533, 591, 609
SfaNI	GCATC	2 cut(s)	171, 623
SfcI	CTRYAG	4 cut(s)	492, 555, 597, 665
SfiI	GGCCNNNNNGGCC	1 cut(s)	186
SinI	GGWCC	2 cut(s)	172, 464
SmiI	ATTTAAAT	1 cut(s)	627
SmiMI	CAYNNNNRTG	1 cut(s)	167
Sse9I	AATT	4 cut(s)	306, 513, 628, 642
SseBI	AGGCCT	1 cut(s)	189
SsiI	CCGC	2 cut(s)	213, 467
SspMI	CTAG	1 cut(s)	647
SstI	GAGCTC	1 cut(s)	148
StuI	AGGCCT	1 cut(s)	189
SwaI	ATTTAAAT	1 cut(s)	627
TaaI	ACNGT	2 cut(s)	176, 319
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	2 cut(s)	67, 138
TasI	AATT	4 cut(s)	306, 513, 628, 642
TatI	WGTACW	1 cut(s)	133
Tru1I	TTAA	4 cut(s)	272, 314, 626, 676
Tru9I	TTAA	4 cut(s)	272, 314, 626, 676
TseFI	GTSAC	3 cut(s)	337, 433, 575
Tsp45I	GTSAC	3 cut(s)	337, 433, 575
TspDTI	ATGAA	1 cut(s)	53
TspGWI	ACGGA	1 cut(s)	217
VpaK11BI	GGWCC	2 cut(s)	172, 464
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XspI	CTAG	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.