Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001192

Physical Location & Seq

Genomic Coordinates Reverse (-)

78068450 .. 78071907

Gene Structure 3458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG490400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2379 bp

ATGGGAGATGCATATCATCCGGTAAGTATTGGGCAGTGTATTCAATTGCCTCCCAATGTACATTCGGAGGGAATAAAAGGGAAGAAAGATCTTTGGGGACTGGGGTTTTCCCTTCCGATGCTGGAAATGCAGATGGCCATCATTTTCATCATCACCAAAGTCCTCCATTTAATTTTGAAGAAGTTTCATATCTCTAAGTTCAACAGCCAGCTTCTTGCGGGTATACTCCTCGGCCACCTTGGCAAAAACCTCAGCCTCCCCGGGACGGATAAGAAGTTGGACGAACTAACATTTCCTGTAGACAGTCAAGAAGTAATTAGTGTTCTGGGTGAGCTTGGCTTTGGACTCTTTCTGTTCGTCATTGGAGTGAAAATGGAGGTGGAAATGATAAGAAGAATAGGACGTAAAGCGATCCTCACCGGTACTTTATGCACGTTGGTCCCTTTGGTCAGCGGTATAAGTCTTCAAAAGCTTACCGCAGGACCTGTATTTGGCATTGACAAGGAAAAAACCGACAGGCTTACGGTTGTGACTGCCATACATACACTAACTTTTTTTCCGGTTGTTGCTCTCCTTCTCGAGGAACTGAAGCTCCTCAATTCTGAAATGGGCCGGTTAAGCCTGACTGCTACCATAGTCTGTGAGCTCTTAAGTTTGTTTCTCCAGTTTGTTAACAGATCAATTTCATCCATAACTAATGAAGGACATGAGAGGGATTTAGTACACCTCGCAATAGCCTTTGGTTACGTTACTTCTGTTGCGGTAATATTTAGACCAATAATGTTATGGGTCGTTAGGAAGACCCCGGACAACAGGCCAGTCAAGAAAATCTATCTCAATGCCATAGTCCTGCTGGTGTTTGTGTCTGGAATAGGTTCACATCTATACGGCCAGACATTTCATTTTGGCCCTCTCATATTTGGTTTGGCTGTCCCAGCTGGACAACCTCTGGGATCGGCTTTGGAAGAAAAATTCCATCTCTTTGTTTTCGAAGTGTTTCTACCCCTTTTTGTGACTACATATGCAATGAGGGCTGATTTTGGGTCGATCAGATTGGACGATCCAAGAACACAGCTTACAATAATCCTCATAGTCCTCATTTTTGTGGTCAAAATATTAGCCACCATGGTCGCTCCGTTATATTTTAAGGTTCCCTTAACCGATGCATTTGTTCTTGCTCTCATTTTGAGCTGCAGAGGGATTATCCACCTTGGCACCTATACTTGGTACAGCGACACCCGGATGATAGATGATTCTGCTGATTCTGTGTATGCTGTGACACTCGCTAGCGTTGTAGTGACTTCAACTCTCGTGCCTATTATAGTGAAGCGCCTCTATGATCCTTCAAGAAAATACGCAGGCTACGAGAGAAGGGACATTATGCATTTGAAACCTAATGCAGAGCTCAAAATTCTCACCTGCATCCACAGGTCATCTAACATGCCTGCAGTGATCAATCTACTTGATGCAGCGTGTCCATCTAAAGAAAACCCCATTAATGTTTGTGTACTCCATCTCATCGAATTAATCGGCAGAACGGCTCCCATATTTATCTCCCACCAAGTGCAGGGGAAAACAGTTTCCCATGTTAATACATATTCAGCAAATGTGATCCTTTATTTCAATCAGTTTGAGAAAGAAAATCGTGGTGCTGTTAATTTGAGCATGTTCACAGCAATCTCTCCACCAAATATCATGCATGAAGACATATGCACGCTTGCAATGGACAAGCTCACATCCCTAATAATCCTCCCATTTCATCGAAAATGGTCGATTGACGGGTCCAGTATTGAGTCGGAAGACAATACTATAAGGACACTAAACTTCAGTGTACTCGAAAGAGCTCCTTGTTCCGTTGGTATCCTTGTGGATCGGGGACATTTAGGTCGGTCCACCTCTGTTGTATCCACACTATCAACATTTTCGGTTGCTGTAGTCTTCTTGGGAGGGAAAGATGACAGGGAGGCATTGACCTTTGCCAAAAGAATGGCCAGGGACTCGACGATTAGGTTAACAGTAATCCATTTAGTGGCCATGGGTAATGAATATGCTGGTGGGGAATGGGATAAAATACTGGATGCAGAGGTATTGAAGGAGTTCAAATATAACCATGTGGGTGAAGGTCTTGTAATATATTTAGAGGAAATGGTGAAAGATGGACCGCAAACAGCCTTTCTATTAAGGTCTATGGTGGCAGAGTATGATATAATCATAGTTGGGAGAAGTCATAAGTCAGAGTCACCTCAGACGGTAGGGCTTTTCGAATGGTGCGAATTTCCGGAGTTGGGGATAATAGGAGACTTGCTTGCATTACCTGATGTCGATTGTAAGGCCTCCATTCTTGTGATGCAACAACAAGAGTTGAGCAGAAGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

792

Amino Acids

87.83

Weight (kDa)

6.91

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	51 - 443	3.1e-32	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	503 - 630	3.9e-12	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	641 - 785	7.8e-10	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44900 AT5G22900
fragaria_vesca	FvH4_3g06341 FvH4_3g23050 FvH4_3g39831 FvH4_6g14510 FvH4_7g14610
malus_domestica	MD02G1295300.v1.1 MD03G1057300.v1.1 MD05G1291400.v1.1 MD10G1267300.v1.1 MD11G1059200.v1.1 MD14G1082300.v1.1
prunus_persica	Prupe.1G346300_v2.0.a1 Prupe.2G029000_v2.0.a1 Prupe.4G074200_v2.0.a1 Prupe.6G047400_v2.0.a1 Prupe.6G047500_v2.0.a1 Prupe.6G047600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0356111 RchiOBHm_Chr1g0356121 RchiOBHm_Chr4g0446581 RchiOBHm_Chr5g0071781
rosa_laevigata	RLG00000005649 RLG00000028106 RLG00000036246 RLG00000036247 RLG00000036248
rosa_multiflora	Rmu_sc0001113.1_g000009 Rmu_sc0002569.1_g000023 Rmu_sc0003229.1_g000013 Rmu_sc0036166.1_g000001 Rmu_ssc0000144.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009380 Rroxscaffold_1G00009410 Rroxscaffold_4G00299800 Rroxscaffold_5G00386970
rosa_rugosa	Rorug04G0372400 Rorug05G0414600 Rorug05G0414700
rosa_samantha	Rh1AG262500 Rh1BG231000 Rh1CG245800 Rh4AG434100 Rh4BG443300 Rh4CG460600 Rh4DG442100 Rh5AG470700 Rh5BG490400 Rh5CG514400 Rh5DG501400 Rh5DG501600 Rh5DG501700
rosa_wichuraiana	Rw1G023190 Rw4G037110 Rw5G043740 Rw5G043750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1427
AasI	GACNNNNNNGTC	1 cut(s)	1884
Acc36I	ACCTGC	1 cut(s)	1427
AccB1I	GGYRCC	1 cut(s)	1214
AccB7I	CCANNNNNTGG	1 cut(s)	2029
AccI	GTMKAC	2 cut(s)	223, 300
AccIII	TCCGGA	1 cut(s)	2278
AciI	CCGC	5 cut(s)	218, 453, 477, 761, 2162
AclWI	GGATC	6 cut(s)	406, 961, 1055, 1334, 1606, 1878
AcoI	YGGCCR	5 cut(s)	135, 232, 889, 1989, 2031
AcsI	RAATTY	3 cut(s)	971, 1410, 2273
AcuI	CTGAAG	2 cut(s)	608, 1810
AdeI	CACNNNGTG	1 cut(s)	1564
AfaI	GTAC	6 cut(s)	60, 424, 723, 1229, 1509, 1833
AfiI	CCNNNNNNNGG	7 cut(s)	265, 491, 580, 1224, 1567, 2029, 2285
AflII	CTTAAG	1 cut(s)	649
AgeI	ACCGGT	1 cut(s)	419
AjnI	CCWGG	1 cut(s)	1991
AloI	GAACNNNNNNTCC	2 cut(s)	576, 608
Alw21I	GWGCWC	3 cut(s)	648, 1407, 1846
Alw26I	GTCTC	1 cut(s)	2292
AlwI	GGATC	6 cut(s)	406, 961, 1055, 1334, 1606, 1878
AlwNI	CAGNNNCTG	1 cut(s)	485
Ama87I	CYCGRG	2 cut(s)	260, 578
Aor13HI	TCCGGA	1 cut(s)	2278
AoxI	GGCC	9 cut(s)	135, 232, 610, 815, 889, 907, 1989, 2031, 2331
ApeKI	GCWGC	2 cut(s)	1191, 1469
ApoI	RAATTY	3 cut(s)	971, 1410, 2273
AseI	ATTAAT	2 cut(s)	1497, 1526
AsiGI	ACCGGT	1 cut(s)	419
Asp700I	GAANNNNTTC	3 cut(s)	874, 996, 2096
AspLEI	GCGC	1 cut(s)	1332
AspS9I	GGNCC	7 cut(s)	439, 482, 610, 908, 1782, 1890, 2159
AsuC2I	CCSGG	4 cut(s)	261, 262, 806, 1240
AsuHPI	GGTGA	7 cut(s)	145, 341, 409, 1408, 2129, 2161, 2232
AsuII	TTCGAA	2 cut(s)	990, 2262
AsuNHI	GCTAGC	1 cut(s)	1286
AvaI	CYCGRG	2 cut(s)	260, 578
AvaII	GGWCC	5 cut(s)	439, 482, 1782, 1890, 2159
BalI	TGGCCA	3 cut(s)	137, 1991, 2033
BanI	GGYRCC	1 cut(s)	1214
BanII	GRGCYC	3 cut(s)	648, 1407, 1846
BarI	GAAGNNNNNNTAC	2 cut(s)	984, 1016
BauI	CACGAG	1 cut(s)	1310
BbsI	GAAGAC	5 cut(s)	455, 806, 1710, 1806, 1930
Bbv12I	GWGCWC	3 cut(s)	648, 1407, 1846
BbvCI	CCTCAGC	1 cut(s)	251
BbvI	GCAGC	2 cut(s)	1178, 1481
BccI	CCATC	6 cut(s)	127, 146, 984, 1486, 1521, 2150
BceAI	ACGGC	2 cut(s)	904, 1554
BciT130I	CCWGG	1 cut(s)	1993
BciVI	GTATCC	2 cut(s)	1871, 1915
BclI	TGATCA	1 cut(s)	1452
BcnI	CCSGG	4 cut(s)	261, 262, 806, 1240
BcoDI	GTCTC	1 cut(s)	2292
BfaI	CTAG	1 cut(s)	1287
BfmI	CTRYAG	4 cut(s)	297, 1192, 1446, 1932
BfoI	RGCGCY	1 cut(s)	1333
BfrI	CTTAAG	1 cut(s)	649
BfuAI	ACCTGC	1 cut(s)	1427
BfuI	GTATCC	2 cut(s)	1871, 1915
BglI	GCCNNNNNGGC	1 cut(s)	240
BglII	AGATCT	1 cut(s)	88
BisI	GCNGC	2 cut(s)	1192, 1470
BlsI	GCNGC	2 cut(s)	1193, 1471
Bme1390I	CCNGG	5 cut(s)	261, 262, 806, 1240, 1993
Bme18I	GGWCC	5 cut(s)	439, 482, 1782, 1890, 2159
BmeT110I	CYCGRG	2 cut(s)	260, 578
BmgT120I	GGNCC	7 cut(s)	439, 482, 610, 908, 1782, 1890, 2159
BmiI	GGNNCC	5 cut(s)	441, 1152, 1216, 1542, 1783
BmrFI	CCNGG	5 cut(s)	261, 262, 806, 1240, 1993
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	6 cut(s)	108, 1153, 1431, 1456, 2068, 2337
BmtI	GCTAGC	1 cut(s)	1290
BmuI	ACTGGG	1 cut(s)	110
BpiI	GAAGAC	5 cut(s)	455, 806, 1710, 1806, 1930
BpmI	CTGGAG	1 cut(s)	647
Bpu10I	CCTNAGC	1 cut(s)	251
Bpu14I	TTCGAA	2 cut(s)	990, 2262
BpuMI	CCSGG	4 cut(s)	261, 262, 806, 1240
BsaBI	GATNNNNATC	2 cut(s)	12, 137
BsaJI	CCNNGG	9 cut(s)	229, 238, 259, 260, 804, 1125, 1210, 1992, 2034
BsaWI	WCCGGW	4 cut(s)	19, 419, 559, 2278
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bsc4I	CCNNNNNNNGG	7 cut(s)	265, 491, 580, 1224, 1567, 2029, 2285
Bse118I	RCCGGY	2 cut(s)	419, 612
Bse1I	ACTGG	5 cut(s)	105, 664, 818, 1785, 2079
Bse3DI	GCAATG	2 cut(s)	1032, 1728
Bse8I	GATNNNNATC	2 cut(s)	12, 137
BseAI	TCCGGA	1 cut(s)	2278
BseBI	CCWGG	1 cut(s)	1993
BseDI	CCNNGG	9 cut(s)	229, 238, 259, 260, 804, 1125, 1210, 1992, 2034
BseGI	GGATG	6 cut(s)	16, 686, 1248, 1422, 1736, 2083
BseJI	GATNNNNATC	2 cut(s)	12, 137
BseLI	CCNNNNNNNGG	7 cut(s)	265, 491, 580, 1224, 1567, 2029, 2285
BseMI	GCAATG	2 cut(s)	1032, 1728
BseMII	CTCAG	2 cut(s)	265, 2258
BseNI	ACTGG	5 cut(s)	105, 664, 818, 1785, 2079
BseRI	GAGGAG	2 cut(s)	218, 584
BseXI	GCAGC	2 cut(s)	1178, 1481
BseYI	CCCAGC	1 cut(s)	934
BsgI	GTGCAG	1 cut(s)	1586
BshFI	GGCC	9 cut(s)	137, 234, 612, 817, 891, 909, 1991, 2033, 2333
BshNI	GGYRCC	1 cut(s)	1214
BshTI	ACCGGT	1 cut(s)	419
BsiHKAI	GWGCWC	3 cut(s)	648, 1407, 1846
BsiHKCI	CYCGRG	2 cut(s)	260, 578
BsiSI	CCGG	8 cut(s)	20, 261, 420, 560, 613, 806, 1240, 2279
BslFI	GGGAC	7 cut(s)	111, 277, 425, 917, 1388, 1890, 2009
BslI	CCNNNNNNNGG	7 cut(s)	265, 491, 580, 1224, 1567, 2029, 2285
BsmAI	GTCTC	1 cut(s)	2292
BsmFI	GGGAC	7 cut(s)	111, 277, 425, 917, 1388, 1890, 2009
BsnI	GGCC	9 cut(s)	137, 234, 612, 817, 891, 909, 1991, 2033, 2333
BsoBI	CYCGRG	2 cut(s)	260, 578
Bsp119I	TTCGAA	2 cut(s)	990, 2262
Bsp1286I	GDGCHC	3 cut(s)	648, 1407, 1846
Bsp13I	TCCGGA	1 cut(s)	2278
Bsp1407I	TGTACA	1 cut(s)	58
Bsp19I	CCATGG	2 cut(s)	1125, 2034
BspACI	CCGC	5 cut(s)	218, 453, 477, 761, 2162
BspANI	GGCC	9 cut(s)	137, 234, 612, 817, 891, 909, 1991, 2033, 2333
BspCNI	CTCAG	2 cut(s)	264, 2257
BspEI	TCCGGA	1 cut(s)	2278
BspLI	GGNNCC	5 cut(s)	441, 1152, 1216, 1542, 1783
BspMAI	CTGCAG	2 cut(s)	1196, 1450
BspMI	ACCTGC	1 cut(s)	1427
BspOI	GCTAGC	1 cut(s)	1290
BspPI	GGATC	6 cut(s)	406, 961, 1055, 1334, 1606, 1878
BspT104I	TTCGAA	2 cut(s)	990, 2262
BspT107I	GGYRCC	1 cut(s)	1214
BspTI	CTTAAG	1 cut(s)	649
BsrDI	GCAATG	2 cut(s)	1032, 1728
BsrFI	RCCGGY	2 cut(s)	419, 612
BsrGI	TGTACA	1 cut(s)	58
BsrI	ACTGG	5 cut(s)	105, 664, 818, 1785, 2079
BssAI	RCCGGY	2 cut(s)	419, 612
BssECI	CCNNGG	9 cut(s)	229, 238, 259, 260, 804, 1125, 1210, 1992, 2034
BssNAI	GTATAC	1 cut(s)	224
BssSI	CACGAG	1 cut(s)	1310
BssT1I	CCWWGG	4 cut(s)	238, 1125, 1210, 2034
Bst1107I	GTATAC	1 cut(s)	224
Bst2BI	CACGAG	1 cut(s)	1310
Bst2UI	CCWGG	1 cut(s)	1993
Bst4CI	ACNGT	5 cut(s)	305, 526, 1579, 2017, 2251
BstAFI	CTTAAG	1 cut(s)	649
BstAUI	TGTACA	1 cut(s)	58
BstBI	TTCGAA	2 cut(s)	990, 2262
BstC8I	GCNNGC	7 cut(s)	209, 1288, 1360, 1446, 1715, 1719, 2307
BstDEI	CTNAG	3 cut(s)	195, 251, 2244
BstDSI	CCRYGG	2 cut(s)	1125, 2034
BstENI	CCTNNNNNAGG	1 cut(s)	578
BstF5I	GGATG	6 cut(s)	16, 686, 1248, 1422, 1736, 2083
BstH2I	RGCGCY	1 cut(s)	1333
BstHHI	GCGC	1 cut(s)	1332
BstMAI	GTCTC	1 cut(s)	2292
BstMWI	GCNNNNNNNGC	5 cut(s)	127, 240, 618, 935, 1031
BstNI	CCWGG	1 cut(s)	1993
BstNSI	RCATGY	2 cut(s)	1444, 1669
BstSCI	CCNGG	5 cut(s)	259, 260, 804, 1238, 1991
BstSFI	CTRYAG	4 cut(s)	297, 1192, 1446, 1932
BstV1I	GCAGC	2 cut(s)	1178, 1481
BstV2I	GAAGAC	5 cut(s)	455, 806, 1710, 1806, 1930
BstX2I	RGATCY	1 cut(s)	88
BstXI	CCANNNNNNTGG	1 cut(s)	1987
BstYI	RGATCY	1 cut(s)	88
BstZ17I	GTATAC	1 cut(s)	224
BsuI	GTATCC	2 cut(s)	1871, 1915
BsuRI	GGCC	9 cut(s)	137, 234, 612, 817, 891, 909, 1991, 2033, 2333
BtgI	CCRYGG	2 cut(s)	1125, 2034
BtsCI	GGATG	6 cut(s)	16, 686, 1248, 1422, 1736, 2083
BtsI	GCAGTG	2 cut(s)	41, 1455
BtsIMutI	CAGTG	3 cut(s)	41, 1455, 1834
BveI	ACCTGC	1 cut(s)	1427
Cac8I	GCNNGC	7 cut(s)	209, 1288, 1360, 1446, 1715, 1719, 2307
CaiI	CAGNNNCTG	1 cut(s)	485
CfoI	GCGC	1 cut(s)	1332
Cfr10I	RCCGGY	2 cut(s)	419, 612
Cfr13I	GGNCC	7 cut(s)	439, 482, 610, 908, 1782, 1890, 2159
Cfr9I	CCCGGG	1 cut(s)	260
Csp6I	GTAC	6 cut(s)	59, 423, 722, 1228, 1508, 1832
CspAI	ACCGGT	1 cut(s)	419
CspCI	CAANNNNNGTGG	2 cut(s)	1882, 1917
CviAII	CATG	9 cut(s)	707, 1126, 1441, 1586, 1666, 1696, 1700, 2035, 2111
CviQI	GTAC	6 cut(s)	59, 423, 722, 1228, 1508, 1832
DdeI	CTNAG	3 cut(s)	195, 251, 2244
DraIII	CACNNNGTG	1 cut(s)	1564
DrdI	GACNNNNNNGTC	1 cut(s)	1884
DseDI	GACNNNNNNGTC	1 cut(s)	1884
EaeI	YGGCCR	5 cut(s)	135, 232, 889, 1989, 2031
Ecl136II	GAGCTC	3 cut(s)	646, 1405, 1844
Eco130I	CCWWGG	4 cut(s)	238, 1125, 1210, 2034
Eco147I	AGGCCT	1 cut(s)	2333
Eco24I	GRGCYC	3 cut(s)	648, 1407, 1846
Eco47I	GGWCC	5 cut(s)	439, 482, 1782, 1890, 2159
Eco53kI	GAGCTC	3 cut(s)	646, 1405, 1844
Eco57I	CTGAAG	2 cut(s)	608, 1810
Eco88I	CYCGRG	2 cut(s)	260, 578
EcoICRI	GAGCTC	3 cut(s)	646, 1405, 1844
EcoNI	CCTNNNNNAGG	1 cut(s)	578
EcoO109I	RGGNCCY	1 cut(s)	482
EcoRII	CCWGG	1 cut(s)	1991
EcoT14I	CCWWGG	4 cut(s)	238, 1125, 1210, 2034
EcoT22I	ATGCAT	4 cut(s)	13, 1168, 1386, 1701
EcoT38I	GRGCYC	3 cut(s)	648, 1407, 1846
ErhI	CCWWGG	4 cut(s)	238, 1125, 1210, 2034
FaeI	CATG	9 cut(s)	710, 1129, 1444, 1589, 1669, 1699, 1703, 2038, 2114
FalI	AAGNNNNNCTT	4 cut(s)	1139, 1171, 1831, 1863
FaqI	GGGAC	7 cut(s)	111, 277, 425, 917, 1388, 1890, 2009
FatI	CATG	9 cut(s)	706, 1125, 1440, 1585, 1665, 1695, 1699, 2034, 2110
FauI	CCCGC	1 cut(s)	211
FauNDI	CATATG	2 cut(s)	1021, 1709
FbaI	TGATCA	1 cut(s)	1452
FblI	GTMKAC	2 cut(s)	223, 300
Fnu4HI	GCNGC	2 cut(s)	1192, 1470
FokI	GGATG	6 cut(s)	3, 673, 1255, 1409, 1723, 2090
FriOI	GRGCYC	3 cut(s)	648, 1407, 1846
Fsp4HI	GCNGC	2 cut(s)	1192, 1470
FspBI	CTAG	1 cut(s)	1287
GlaI	GCGC	1 cut(s)	1331
GluI	GCNGC	2 cut(s)	1192, 1470
GsaI	CCCAGC	1 cut(s)	938
GsuI	CTGGAG	1 cut(s)	647
HaeII	RGCGCY	1 cut(s)	1333
HaeIII	GGCC	9 cut(s)	137, 234, 612, 817, 891, 909, 1991, 2033, 2333
HapII	CCGG	8 cut(s)	20, 261, 420, 560, 613, 806, 1240, 2279
HhaI	GCGC	1 cut(s)	1332
Hin1II	CATG	9 cut(s)	710, 1129, 1444, 1589, 1669, 1699, 1703, 2038, 2114
Hin6I	GCGC	1 cut(s)	1330
HinP1I	GCGC	1 cut(s)	1330
HincII	GTYRAC	2 cut(s)	673, 2013
HindII	GTYRAC	2 cut(s)	673, 2013
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	6 cut(s)	345, 1253, 1262, 1793, 1997, 2237
HpaI	GTTAAC	2 cut(s)	673, 2013
HpaII	CCGG	8 cut(s)	20, 261, 420, 560, 613, 806, 1240, 2279
HphI	GGTGA	7 cut(s)	145, 341, 409, 1408, 2129, 2161, 2232
Hpy188I	TCNGA	7 cut(s)	67, 117, 604, 1052, 1798, 2236, 2247
Hpy188III	TCNNGA	6 cut(s)	308, 578, 823, 867, 1347, 2279
Hpy99I	CGWCG	1 cut(s)	2005
HpyAV	CCTTC	7 cut(s)	122, 584, 695, 1353, 1365, 2086, 2114
HpyCH4III	ACNGT	5 cut(s)	305, 526, 1579, 2017, 2251
HpyCH4IV	ACGT	3 cut(s)	403, 434, 747
HpyF10VI	GCNNNNNNNGC	5 cut(s)	127, 240, 618, 935, 1031
HpyF3I	CTNAG	3 cut(s)	195, 251, 2244
HpySE526I	ACGT	3 cut(s)	403, 434, 747
Hsp92II	CATG	9 cut(s)	710, 1129, 1444, 1589, 1669, 1699, 1703, 2038, 2114
HspAI	GCGC	1 cut(s)	1330
Kpn2I	TCCGGA	1 cut(s)	2278
Ksp22I	TGATCA	1 cut(s)	1452
KspAI	GTTAAC	2 cut(s)	673, 2013
LmnI	GCTCC	4 cut(s)	597, 1138, 1546, 1849
Lsp1109I	GCAGC	2 cut(s)	1178, 1481
LweI	GCATC	6 cut(s)	108, 1153, 1431, 1456, 2068, 2337
MaeI	CTAG	1 cut(s)	1287
MaeII	ACGT	3 cut(s)	403, 434, 747
MaeIII	GTNAC	7 cut(s)	529, 743, 748, 1012, 1276, 1297, 2238
MboII	GAAGA	9 cut(s)	94, 190, 405, 455, 811, 977, 1715, 1811, 1930
MfeI	CAATTG	1 cut(s)	44
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	3 cut(s)	648, 1407, 1846
MlsI	TGGCCA	3 cut(s)	137, 1991, 2033
MluNI	TGGCCA	3 cut(s)	137, 1991, 2033
MlyI	GAGTC	4 cut(s)	339, 1802, 1991, 2246
MmeI	TCCRAC	2 cut(s)	258, 1776
Mox20I	TGGCCA	3 cut(s)	137, 1991, 2033
Mph1103I	ATGCAT	4 cut(s)	13, 1168, 1386, 1701
MroI	TCCGGA	1 cut(s)	2278
MroXI	GAANNNNTTC	3 cut(s)	874, 996, 2096
MscI	TGGCCA	3 cut(s)	137, 1991, 2033
MslI	CAYNNNNRTG	5 cut(s)	365, 1103, 1241, 2115, 2342
Msp20I	TGGCCA	3 cut(s)	137, 1991, 2033
MspA1I	CMGCKG	2 cut(s)	453, 938
MspCI	CTTAAG	1 cut(s)	649
MspI	CCGG	8 cut(s)	20, 261, 420, 560, 613, 806, 1240, 2279
MspR9I	CCNGG	5 cut(s)	261, 262, 806, 1240, 1993
MunI	CAATTG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	1993
MwoI	GCNNNNNNNGC	5 cut(s)	127, 240, 618, 935, 1031
NciI	CCSGG	4 cut(s)	261, 262, 806, 1240
NcoI	CCATGG	2 cut(s)	1125, 2034
NdeI	CATATG	2 cut(s)	1021, 1709
NheI	GCTAGC	1 cut(s)	1286
NlaIII	CATG	9 cut(s)	710, 1129, 1444, 1589, 1669, 1699, 1703, 2038, 2114
NlaIV	GGNNCC	5 cut(s)	441, 1152, 1216, 1542, 1783
NmeAIII	GCCGAG	1 cut(s)	210
NmuCI	GTSAC	5 cut(s)	529, 1012, 1276, 1297, 2238
NsiI	ATGCAT	4 cut(s)	13, 1168, 1386, 1701
NspI	RCATGY	2 cut(s)	1444, 1669
NspV	TTCGAA	2 cut(s)	990, 2262
PaeR7I	CTCGAG	1 cut(s)	578
PaqCI	CACCTGC	1 cut(s)	1427
PceI	AGGCCT	1 cut(s)	2333
PcsI	WCGNNNNNNNCGW	2 cut(s)	1362, 2268
PdmI	GAANNNNTTC	3 cut(s)	874, 996, 2096
PfeI	GAWTC	2 cut(s)	1253, 1262
PflMI	CCANNNNNTGG	1 cut(s)	2029
PinAI	ACCGGT	1 cut(s)	419
PkrI	GCNGC	2 cut(s)	1193, 1471
PleI	GAGTC	4 cut(s)	339, 1801, 1991, 2245
PpsI	GAGTC	4 cut(s)	339, 1801, 1991, 2245
PpuMI	RGGWCCY	1 cut(s)	482
PshBI	ATTAAT	2 cut(s)	1497, 1526
Psp124BI	GAGCTC	3 cut(s)	648, 1407, 1846
Psp5II	RGGWCCY	1 cut(s)	482
Psp6I	CCWGG	1 cut(s)	1991
PspFI	CCCAGC	1 cut(s)	934
PspGI	CCWGG	1 cut(s)	1991
PspN4I	GGNNCC	5 cut(s)	441, 1152, 1216, 1542, 1783
PspPI	GGNCC	7 cut(s)	439, 482, 610, 908, 1782, 1890, 2159
PspPPI	RGGWCCY	1 cut(s)	482
PsrI	GAACNNNNNNTAC	4 cut(s)	306, 338, 1060, 1092
PstI	CTGCAG	2 cut(s)	1196, 1450
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	88
PvuII	CAGCTG	1 cut(s)	938
RsaI	GTAC	6 cut(s)	60, 424, 723, 1229, 1509, 1833
RsaNI	GTAC	6 cut(s)	59, 423, 722, 1228, 1508, 1832
RseI	CAYNNNNRTG	5 cut(s)	365, 1103, 1241, 2115, 2342
SacI	GAGCTC	3 cut(s)	648, 1407, 1846
SatI	GCNGC	2 cut(s)	1192, 1470
Sau96I	GGNCC	7 cut(s)	439, 482, 610, 908, 1782, 1890, 2159
SchI	GAGTC	4 cut(s)	339, 1802, 1991, 2246
ScrFI	CCNGG	5 cut(s)	261, 262, 806, 1240, 1993
SduI	GDGCHC	3 cut(s)	648, 1407, 1846
SfaNI	GCATC	6 cut(s)	108, 1153, 1431, 1456, 2068, 2337
SfcI	CTRYAG	4 cut(s)	297, 1192, 1446, 1932
Sfr274I	CTCGAG	1 cut(s)	578
SfuI	TTCGAA	2 cut(s)	990, 2262
SinI	GGWCC	5 cut(s)	439, 482, 1782, 1890, 2159
SlaI	CTCGAG	1 cut(s)	578
SmaI	CCCGGG	1 cut(s)	262
SmiMI	CAYNNNNRTG	5 cut(s)	365, 1103, 1241, 2115, 2342
SmlI	CTYRAG	2 cut(s)	578, 649
SmoI	CTYRAG	2 cut(s)	578, 649
SseBI	AGGCCT	1 cut(s)	2333
SsiI	CCGC	5 cut(s)	218, 453, 477, 761, 2162
SspI	AATATT	2 cut(s)	768, 1116
SspMI	CTAG	1 cut(s)	1287
SstI	GAGCTC	3 cut(s)	648, 1407, 1846
StuI	AGGCCT	1 cut(s)	2333
StyD4I	CCNGG	5 cut(s)	259, 260, 804, 1238, 1991
StyI	CCWWGG	4 cut(s)	238, 1125, 1210, 2034
TaaI	ACNGT	5 cut(s)	305, 526, 1579, 2017, 2251
TaiI	ACGT	3 cut(s)	406, 437, 750
TaqII	GACCGA	1 cut(s)	1878
TatI	WGTACW	4 cut(s)	58, 721, 1507, 1831
TfiI	GAWTC	2 cut(s)	1253, 1262
TscAI	CASTG	3 cut(s)	41, 1455, 1834
TseFI	GTSAC	5 cut(s)	529, 1012, 1276, 1297, 2238
TseI	GCWGC	2 cut(s)	1191, 1469
Tsp45I	GTSAC	5 cut(s)	529, 1012, 1276, 1297, 2238
TspDTI	ATGAA	8 cut(s)	136, 176, 675, 714, 890, 1716, 1748, 2058
TspGWI	ACGGA	3 cut(s)	281, 1125, 1843
TspMI	CCCGGG	1 cut(s)	260
TspRI	CASTG	3 cut(s)	41, 1455, 1834
Van91I	CCANNNNNTGG	1 cut(s)	2029
Vha464I	CTTAAG	1 cut(s)	649
VpaK11BI	GGWCC	5 cut(s)	439, 482, 1782, 1890, 2159
VspI	ATTAAT	2 cut(s)	1497, 1526
XagI	CCTNNNNNAGG	1 cut(s)	578
XapI	RAATTY	3 cut(s)	971, 1410, 2273
XceI	RCATGY	2 cut(s)	1444, 1669
XcmI	CCANNNNNNNNNTGG	2 cut(s)	783, 850
XhoI	CTCGAG	1 cut(s)	578
XmaI	CCCGGG	1 cut(s)	260
XmiI	GTMKAC	2 cut(s)	223, 300
XmnI	GAANNNNTTC	3 cut(s)	874, 996, 2096
XspI	CTAG	1 cut(s)	1287
Zsp2I	ATGCAT	4 cut(s)	13, 1168, 1386, 1701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.